BLASTX nr result
ID: Dioscorea21_contig00017801
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00017801
(1683 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo... 470 e-130
ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E sub... 466 e-129
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 426 e-117
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 422 e-115
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 422 e-115
>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
Length = 2017
Score = 470 bits (1209), Expect = e-130
Identities = 261/579 (45%), Positives = 347/579 (59%), Gaps = 22/579 (3%)
Frame = -2
Query: 1682 LDNNPEPVSGLVGHIHLDQTRLNVLSQSLDVILRKCQDVVFSYAKKKGHLSHYFRKISLS 1503
LD E LVGHIHLD+ L ++ S + IL+KCQ+V Y KKKGHLS+ F+ I+ S
Sbjct: 987 LDGTSEAAPALVGHIHLDRAHLERINISTEDILQKCQEVSGKYGKKKGHLSNLFKNITFS 1046
Query: 1502 SSECCSFQYTNHENFSEFPCLQFSYCDPNPNSLPLEKAIHVLAEAICPILLDTIIKGDPR 1323
+ +C Q + PCLQF D S +E+A+ VLA+++C +LL+TIIKGDPR
Sbjct: 1047 TCDCLFTQKLVDGKLPKLPCLQFFVSDNMIVSESVERAVSVLADSLCGVLLNTIIKGDPR 1106
Query: 1322 VHVANIVWIGHDTYSWVKNLRSTLKGELAIEVVIEQDAARRNGDAWRIVLDACLPVMHLI 1143
+ A IVW+G D SWVKN + KGE A+E+++E++ A GDAWR +DAC+PV++LI
Sbjct: 1107 IQEAKIVWVGSDATSWVKNTQKASKGEPAVEIIVEEEEALHIGDAWRTTMDACIPVLNLI 1166
Query: 1142 DTSRSIPYGIQQIEELLGISCAFDQSVRRLSTSIRMVAKGVFKEHLILVANNMTCTGSLI 963
D RSIPYGIQQ+ ELLGISCAFDQ V+RLST++RMVAK V K+HL+LVAN+MT TG+L
Sbjct: 1167 DIRRSIPYGIQQVRELLGISCAFDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLN 1226
Query: 962 GFSTGGFKALFRSLKVQAPFTEATLYTPMKCFERASEKLHTDTLSSIVSSCSWGRHVALG 783
GF+ G+KA FRSLKVQ PFTE+TL TPMKCFE+A+EK H+D+L +VSSCSWG+H A G
Sbjct: 1227 GFNNAGYKATFRSLKVQVPFTESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKHAASG 1286
Query: 782 TGASFDIIWDKHQVAADRDCGENVYDFLEMVRTSNCEEVGGTFFGVEVDNLADEDEGDEC 603
TG+SF I+W++ Q+ ++++ G+ +YD+L +VRT E+ TFF +VD LA+E+E D C
Sbjct: 1287 TGSSFQILWNESQLKSNKEYGDGLYDYLALVRTDE-EKARYTFFD-DVDYLAEENEADVC 1344
Query: 602 LSPEPDGALAQPTFDD-ISELDLNNERASKSSWDN-ASGSLSWDNLGAQKHTQISNESDA 429
LSPE DG + QP FDD + E D+ N SSWDN + + SW+ G+ N+SD
Sbjct: 1345 LSPELDGTIGQPIFDDNLEEQDVQN----NSSWDNGTTTNASWEQNGS-----AGNDSDK 1395
Query: 428 WGTWQ----SKDDGRASAKEPANEAW-VSTKQFTLDAVQDGCGSVK---------ESIWD 291
WG W D G N W V + G G+ K E
Sbjct: 1396 WGGWNDAAAGADTGVTKPANQGNSCWDVPATVEKSSSDWGGWGTEKAKEKEKISEEPAQH 1455
Query: 290 GAQDGHGPAKESAEDGWGSTRNTSQ-----NSWGSGKETTQDGWGSTKISA-KDDWGSAK 129
A GP + A DG S + S NSW K +G K +A K WG
Sbjct: 1456 DAWSVQGPKR--ATDGGASWKKQSSTQNDGNSWKENKGRGSNGGSWEKDNAQKGSWGRGN 1513
Query: 128 QPAQDGIGSVAKSSQDEWGSAKKPVQNEWGSATKPPQDN 12
A++ KS + A + WG+ T P DN
Sbjct: 1514 DEAENNNDVQNKSWETVAADAHASTEKSWGNVTASPSDN 1552
>ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Brachypodium
distachyon]
Length = 1935
Score = 466 bits (1199), Expect = e-129
Identities = 257/581 (44%), Positives = 368/581 (63%), Gaps = 24/581 (4%)
Frame = -2
Query: 1682 LDNNPEPVSGLVGHIHLDQTRLNVLSQSLDVILRKCQDVVFSYAKKKGHLSHYFRKISLS 1503
LD + E LVGHIHL++ RL++++ S + IL+KCQ+V + KKKGHL H F+KI+ S
Sbjct: 912 LDGSSEATPALVGHIHLEKARLDMINVSTEDILQKCQEVSLKHGKKKGHLGHLFKKITFS 971
Query: 1502 SSECCSFQYTNHEN-FSEFPCLQFSYCDPNPN-SLPLEKAIHVLAEAICPILLDTIIKGD 1329
+ +C Q + + PCLQFS+ + P S +E+A+ VLA ++C +LLDTIIKGD
Sbjct: 972 TCDCSFTQKPMIDGKLPKVPCLQFSFSEDIPMLSESVERAVSVLANSLCDVLLDTIIKGD 1031
Query: 1328 PRVHVANIVWIGHDTYSWVKNLRSTLKGELAIEVVIEQDAARRNGDAWRIVLDACLPVMH 1149
PR+ A I+W+G D SWVKN R KGE +E+V+E++ A + GDAWRI +DAC+PV+
Sbjct: 1032 PRIQEAKIMWVGSDAQSWVKNTRKVSKGEPTVEIVVEKNEASKQGDAWRIAMDACIPVID 1091
Query: 1148 LIDTSRSIPYGIQQIEELLGISCAFDQSVRRLSTSIRMVAKGVFKEHLILVANNMTCTGS 969
LIDT RSIPYGIQQ+ ELLGISC+FDQ V+RLST+++ VAKG+ K+HLILVAN+MTCTG+
Sbjct: 1092 LIDTRRSIPYGIQQVRELLGISCSFDQIVQRLSTTMKTVAKGILKDHLILVANSMTCTGN 1151
Query: 968 LIGFSTGGFKALFRSLKVQAPFTEATLYTPMKCFERASEKLHTDTLSSIVSSCSWGRHVA 789
L GF+TGG++A FR+LKVQ PFTE+TL+TPMKCFE+A+EK H+D L +VSSCSWG+H A
Sbjct: 1152 LYGFNTGGYRATFRALKVQVPFTESTLFTPMKCFEKAAEKCHSDALGCVVSSCSWGKHAA 1211
Query: 788 LGTGASFDIIWDKHQVAADRDCGENVYDFLEMVRTSNCEEVGGTFFGVEVDNLADEDEGD 609
LGTG+SF I+W+++Q+ ++++ G+ +YDFL MVRT E+ TF +VD L +++ D
Sbjct: 1212 LGTGSSFQILWNENQLKSNKEYGDGLYDFLAMVRTDQ-EKARYTFLD-DVDYLVEDNAMD 1269
Query: 608 E-CLSPEPDGALAQPTFDDISELDLNNERASKSSWDNAS-GSLSWDNLGAQKHTQISNES 435
+ CLSPE +G PTF+D E + + + +SW+N + + SW +++ N+S
Sbjct: 1270 DICLSPELNGTHGVPTFEDNFE---HQDTQNGNSWENGTKANASW-----EQNASAGNDS 1321
Query: 434 DAWGTWQ----SKDDGRASAKEPANEAWVSTKQFTLDAVQ-DGCGSVKESIWDGAQDGHG 270
D WG W + D G A + N +W D+ G G+ K A+D
Sbjct: 1322 DNWGGWSNAAAAADTGAAKPADQGNSSWDVPATAENDSTDWGGWGNEK------AKDNRT 1375
Query: 269 PAKESAE-DGW---GSTRNT--SQNSWGSGKETTQDGWGSTKISAKDDWGSAKQPAQDGI 108
+ E AE D W G+ + T SWG T +D + + ++ W AK+P+ +
Sbjct: 1376 VSTEPAELDTWSDRGAKKGTDGGGGSWGKQTNTCEDSGTNLE---RNSW--AKRPSSPSL 1430
Query: 107 GSVAKSSQD--------EWGSAKKPV-QNEWGSATKPPQDN 12
+ AK + D + S KK V Q+ W + P N
Sbjct: 1431 STWAKKNSDGGDGTWDKQANSCKKNVEQDSWKNMPVSPARN 1471
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 426 bits (1096), Expect = e-117
Identities = 246/595 (41%), Positives = 356/595 (59%), Gaps = 43/595 (7%)
Frame = -2
Query: 1658 SGLVGHIHLDQTRLNVLSQSLDVILRKCQDVVFSYA-KKKGHLSHYFRKISLSSSECCSF 1482
S L GHIHLD+T L + S+ IL+KC+DV+ S KKK + F++ SLS SECCSF
Sbjct: 933 SCLHGHIHLDKTLLQDWNISMQDILQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSF 992
Query: 1481 QYTNHENFSEFPCLQFSYCDPNPNSLPLEKAIHVLAEAICPILLDTIIKGDPRVHVANIV 1302
Q S+ PCL FSY +P+ LE+ + VL I P+LL+T+IKGDPR+ ANI+
Sbjct: 993 QDPCGRKDSDMPCLMFSYSATDPD---LERTLDVLCNTIYPVLLETVIKGDPRICSANII 1049
Query: 1301 WIGHDTYSWVKNLRSTLKGELAIEVVIEQDAARRNGDAWRIVLDACLPVMHLIDTSRSIP 1122
W D +W++N ++ +GE ++V +E+ A +++GDAWR+V+DACL V+HLIDT RSIP
Sbjct: 1050 WNSSDMTTWIRNCHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDACLSVLHLIDTKRSIP 1109
Query: 1121 YGIQQIEELLGISCAFDQSVRRLSTSIRMVAKGVFKEHLILVANNMTCTGSLIGFSTGGF 942
Y I+Q++ELLG+SCAF+Q+V+RLS S+RMV+KGV KEH+IL+ANNMTC+G+++GF++GG+
Sbjct: 1110 YSIKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGNMLGFNSGGY 1169
Query: 941 KALFRSLKVQAPFTEATLYTPMKCFERASEKLHTDTLSSIVSSCSWGRHVALGTGASFDI 762
KAL RSL ++APFTEATL TP +CFE+A+EK HTD+LS++V SCSWG+ V +GTG+ F++
Sbjct: 1170 KALTRSLNIKAPFTEATLITPRRCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFEL 1229
Query: 761 IWDKHQVAADRDCGENVYDFLEMVRTSNCEEVGGTFFGVEVDNLADEDEGDECLSPEPDG 582
+W++ + D +VY FL+MVR++ + + G +V +E+ + SPE D
Sbjct: 1230 LWNQKETGLDDKEETDVYSFLQMVRSTTNADAYVSSPGFDV---TEEEMAEWAESPERDS 1286
Query: 581 ALAQPTFDDISEL-DLNNE-RASKSSWDNASGSLSWDN-------LGAQKHT--QISNES 435
AL +P F+D +E +L++E + S+S+W+ +S SWDN G K+T + + ES
Sbjct: 1287 ALGEPKFEDSAEFQNLHDEGKPSESNWEKSS---SWDNGCSGGSEWGVSKNTGGEANPES 1343
Query: 434 -----------DAWGTWQSKDDGRASAKEPANEAW-VSTKQFTLDAVQDGCGSVKESIWD 291
DAW +W +K D + S+K + AW + TK D + W+
Sbjct: 1344 NWEKTTNVEKEDAWSSWNTKKDAQESSKSDSGVAWGLKTKDDDADTTPN---------WE 1394
Query: 290 ---GAQDGHGPA-KESAEDGWGSTRNTSQNSW---GSGKETTQDGWGSTKISAKDDWGSA 132
D P E D WG ++ S SW G E+ WGST + WGS+
Sbjct: 1395 TRPAQTDSIVPENNEPTSDVWGH-KSGSDKSWDKKNGGTESAPAAWGSTDAAV---WGSS 1450
Query: 131 KQPAQDGIGSVAKSSQDEWGSAKKPVQ------------NEWGSATKPPQDNWGS 3
D S +S WGS K N+ S T+ WGS
Sbjct: 1451 -----DKKNSETESDAAAWGSRDKKNSEVGSGAGVLGPWNKKSSKTESDGATWGS 1500
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 422 bits (1084), Expect = e-115
Identities = 238/571 (41%), Positives = 346/571 (60%), Gaps = 15/571 (2%)
Frame = -2
Query: 1682 LDNNPEPVSGLVGHIHLDQTRLNVLSQSLDVILRKCQDVVFSYAKKKGHLSHYFRKISLS 1503
+ + EP +GLVGHIHL++ L L+ S+ + +KC++ + S+ KKK ++ +F+KI LS
Sbjct: 989 VSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKK-NVGPFFKKIILS 1047
Query: 1502 SSECCSFQYTNHENFSEFPCLQFSYCDPNPNSLPLEKAIHVLAEAICPILLDTIIKGDPR 1323
ECC+FQ++ S+ PCL F + ++L E+ +H+LA ICP+LL TIIKGD R
Sbjct: 1048 FRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNL--EQILHILAHKICPVLLQTIIKGDSR 1105
Query: 1322 VHVANIVWIGHDTYSWVKNLRSTLKGELAIEVVIEQDAARRNGDAWRIVLDACLPVMHLI 1143
V NI+WI DT +W++N + KGELA+++V+E+ A ++ GDAWRIVLDACLPV+HLI
Sbjct: 1106 VCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLI 1165
Query: 1142 DTSRSIPYGIQQIEELLGISCAFDQSVRRLSTSIRMVAKGVFKEHLILVANNMTCTGSLI 963
DT RSIPY I+Q++ELLGISCAFDQ+V+RLS S+ MVAKGV KEHLIL+AN+MTC G+LI
Sbjct: 1166 DTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMTCAGNLI 1225
Query: 962 GFSTGGFKALFRSLKVQAPFTEATLYTPMKCFERASEKLHTDTLSSIVSSCSWGRHVALG 783
GF++GG+KAL R+L +Q PFTEATL+TP KCFE+ASEK HTD+LSSIV+SCSWG+HV +G
Sbjct: 1226 GFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSWGKHVTVG 1285
Query: 782 TGASFDIIWDKHQVAADRDCGENVYDFLEMVRT-SNCEEVGGTFFGVEVDNLADEDEGDE 606
TG+ FD++WD ++ +D G ++Y FL +VR+ S +E G EV++L EDE E
Sbjct: 1286 TGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLE 1345
Query: 605 C-LSPEPDGALAQPTFDDISELDLNNERASKSSWDNASGSLSWDNLGAQKHTQISNESDA 429
+SPE +P F+D +E +++W+N +
Sbjct: 1346 LGMSPEHSSNFEKPVFEDSAEF--------QNTWEN----------------HVPGSGGD 1381
Query: 428 WGTWQSKDDGRASAKEPANEAWVSTKQFTLD--AVQDGCGSVKESIWDGAQDGHGPAKES 255
W Q+K+ ++ K A +W + K D + ++ S + + WD G ++
Sbjct: 1382 WAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWD--DKGTWGTDKA 1439
Query: 254 AEDGWGSTRNTSQNSWGSGKETTQDG--------WGSTKISAKDDWGSAKQPAQDGIGSV 99
+ T S S G ET +DG WG KI D G K + + +
Sbjct: 1440 QNTAFRRTHEDSPRSSGR-DETFRDGRPQFASSAWGK-KIDEADKTGWNKNDGKPQMDKL 1497
Query: 98 AKSSQDEWG---SAKKPVQNEWGSATKPPQD 15
+S +W + +K Q+ +G + D
Sbjct: 1498 RESY--DWDCKVAQEKTTQSTYGGISSTTGD 1526
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 422 bits (1084), Expect = e-115
Identities = 238/571 (41%), Positives = 346/571 (60%), Gaps = 15/571 (2%)
Frame = -2
Query: 1682 LDNNPEPVSGLVGHIHLDQTRLNVLSQSLDVILRKCQDVVFSYAKKKGHLSHYFRKISLS 1503
+ + EP +GLVGHIHL++ L L+ S+ + +KC++ + S+ KKK ++ +F+KI LS
Sbjct: 929 VSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKK-NVGPFFKKIILS 987
Query: 1502 SSECCSFQYTNHENFSEFPCLQFSYCDPNPNSLPLEKAIHVLAEAICPILLDTIIKGDPR 1323
ECC+FQ++ S+ PCL F + ++L E+ +H+LA ICP+LL TIIKGD R
Sbjct: 988 FRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNL--EQILHILAHKICPVLLQTIIKGDSR 1045
Query: 1322 VHVANIVWIGHDTYSWVKNLRSTLKGELAIEVVIEQDAARRNGDAWRIVLDACLPVMHLI 1143
V NI+WI DT +W++N + KGELA+++V+E+ A ++ GDAWRIVLDACLPV+HLI
Sbjct: 1046 VCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLI 1105
Query: 1142 DTSRSIPYGIQQIEELLGISCAFDQSVRRLSTSIRMVAKGVFKEHLILVANNMTCTGSLI 963
DT RSIPY I+Q++ELLGISCAFDQ+V+RLS S+ MVAKGV KEHLIL+AN+MTC G+LI
Sbjct: 1106 DTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMTCAGNLI 1165
Query: 962 GFSTGGFKALFRSLKVQAPFTEATLYTPMKCFERASEKLHTDTLSSIVSSCSWGRHVALG 783
GF++GG+KAL R+L +Q PFTEATL+TP KCFE+ASEK HTD+LSSIV+SCSWG+HV +G
Sbjct: 1166 GFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSWGKHVTVG 1225
Query: 782 TGASFDIIWDKHQVAADRDCGENVYDFLEMVRT-SNCEEVGGTFFGVEVDNLADEDEGDE 606
TG+ FD++WD ++ +D G ++Y FL +VR+ S +E G EV++L EDE E
Sbjct: 1226 TGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLE 1285
Query: 605 C-LSPEPDGALAQPTFDDISELDLNNERASKSSWDNASGSLSWDNLGAQKHTQISNESDA 429
+SPE +P F+D +E +++W+N +
Sbjct: 1286 LGMSPEHSSNFEKPVFEDSAEF--------QNTWEN----------------HVPGSGGD 1321
Query: 428 WGTWQSKDDGRASAKEPANEAWVSTKQFTLD--AVQDGCGSVKESIWDGAQDGHGPAKES 255
W Q+K+ ++ K A +W + K D + ++ S + + WD G ++
Sbjct: 1322 WAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWD--DKGTWGTDKA 1379
Query: 254 AEDGWGSTRNTSQNSWGSGKETTQDG--------WGSTKISAKDDWGSAKQPAQDGIGSV 99
+ T S S G ET +DG WG KI D G K + + +
Sbjct: 1380 QNTAFRRTHEDSPRSSGR-DETFRDGRPQFASSAWGK-KIDEADKTGWNKNDGKPQMDKL 1437
Query: 98 AKSSQDEWG---SAKKPVQNEWGSATKPPQD 15
+S +W + +K Q+ +G + D
Sbjct: 1438 RESY--DWDCKVAQEKTTQSTYGGISSTTGD 1466