BLASTX nr result

ID: Dioscorea21_contig00017518 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00017518
         (439 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71824.1| hypothetical protein VITISV_042464 [Vitis vinifera]    65   7e-09
ref|XP_002309383.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
ref|XP_002269611.1| PREDICTED: RING-H2 finger protein ATL13 [Vit...    64   1e-08
ref|XP_003610233.1| RING finger protein [Medicago truncatula] gi...    61   8e-08
ref|XP_003549510.1| PREDICTED: RING-H2 finger protein ATL13-like...    59   3e-07

>emb|CAN71824.1| hypothetical protein VITISV_042464 [Vitis vinifera]
          Length = 543

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 51/108 (47%), Positives = 62/108 (57%), Gaps = 12/108 (11%)
 Frame = -2

Query: 438 KIWLRQKKKS-SVVSGDFSTRAFSFRLSL--VRGITGDSKMKSNVSEP-----DELE--- 292
           KIWLR KK++ S  + D S RAFS+R  +        D K+K NVS        ELE   
Sbjct: 432 KIWLRGKKENPSSRTVDSSRRAFSYRFPVHSSSAAAXDXKLK-NVSSSTGRTVSELEIGR 490

Query: 291 -KSGSSEFGVDVEIGSSNSGAVLKAEEGPSFARRTLLWLGGRQNKVVN 151
            ++G SE G D E+ S NS  +      PSFARRTLLWL GRQNKVV+
Sbjct: 491 WENGGSELGCDEEMQSCNS--LDSQANPPSFARRTLLWLMGRQNKVVH 536


>ref|XP_002309383.1| predicted protein [Populus trichocarpa] gi|222855359|gb|EEE92906.1|
           predicted protein [Populus trichocarpa]
          Length = 464

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 38/96 (39%), Positives = 51/96 (53%)
 Frame = -2

Query: 438 KIWLRQKKKSSVVSGDFSTRAFSFRLSLVRGITGDSKMKSNVSEPDELEKSGSSEFGVDV 259
           KIWLR KK+    +G+ S RAFSFR  + + +  D  +K    + D   +         +
Sbjct: 381 KIWLRGKKEKQSSTGESSRRAFSFRFPVNKNVVADDDLKMRKGDSDSCHR---------L 431

Query: 258 EIGSSNSGAVLKAEEGPSFARRTLLWLGGRQNKVVN 151
           E+           E+ PSFARRTLLWL GRQNKVV+
Sbjct: 432 EL----------QEKTPSFARRTLLWLVGRQNKVVH 457


>ref|XP_002269611.1| PREDICTED: RING-H2 finger protein ATL13 [Vitis vinifera]
          Length = 543

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 49/107 (45%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
 Frame = -2

Query: 438 KIWLRQKKKS-SVVSGDFSTRAFSFRLSLVRGITGDSKMK-SNVSEP-----DELE---- 292
           KIWLR KK++ S  + D S RAFS+R  +         +K  NVS        ELE    
Sbjct: 432 KIWLRGKKENPSSRTVDSSRRAFSYRFPVHSSSAAADDLKLKNVSSSTGRTVSELEIGRW 491

Query: 291 KSGSSEFGVDVEIGSSNSGAVLKAEEGPSFARRTLLWLGGRQNKVVN 151
           ++G SE G D E+ S NS  +      PSFARRTLLWL GRQNKVV+
Sbjct: 492 ENGGSELGCDEEMQSCNS--LDSQANPPSFARRTLLWLMGRQNKVVH 536


>ref|XP_003610233.1| RING finger protein [Medicago truncatula]
           gi|355511288|gb|AES92430.1| RING finger protein
           [Medicago truncatula]
          Length = 511

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 50/110 (45%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
 Frame = -2

Query: 438 KIWLRQKK-KSSVVSGDFSTRAFSFRLSL----------VRGITGDSKMKSNVSEPD--E 298
           KIWLR KK K +    D S RA SFR  L          ++G  G    +S VSE D  +
Sbjct: 397 KIWLRGKKDKKNGDVTDSSRRAVSFRFPLQSNVGSGNDDLKGKNGMFHTRSTVSEMDFGK 456

Query: 297 LEKSGSSEF-GVDVEIGSSNSGAVLKAEEGPSFARRTLLWLGGRQNKVVN 151
            E  G SEF G D E  S  S  +      PSFARRTLLWL G+QNKVV+
Sbjct: 457 WENGGGSEFSGYDEENQSCYS--MDSQARAPSFARRTLLWLTGKQNKVVH 504


>ref|XP_003549510.1| PREDICTED: RING-H2 finger protein ATL13-like [Glycine max]
          Length = 522

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 50/118 (42%), Positives = 58/118 (49%), Gaps = 22/118 (18%)
 Frame = -2

Query: 438 KIWLRQKKKSSVVSGDFSTRAFSFRL----SLVRGITGDSK---------------MKSN 316
           KIWLR KK       D S RA SFR     S+V   +G +                 +S 
Sbjct: 401 KIWLRGKKDKPNSVADSSRRAVSFRFPAKSSVVTAASGSAHDDDDDDLKGKNCKFDTRST 460

Query: 315 VSEPD--ELEKSGSSEFGVDVEIGSSNSGAVLKAEEGPSFARRTLLWL-GGRQNKVVN 151
           +SE D  + E  G SEF  D E  S  S    +A   PSFARRTLLWL GGRQNKVV+
Sbjct: 461 ISEMDIGKWENGGGSEFDYDDENQSCYSLDSSQAR-APSFARRTLLWLTGGRQNKVVH 517


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