BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00016830
         (1111 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   219   1e-84
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   227   1e-84
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   219   1e-84
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   219   2e-84
ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thal...   224   1e-83

>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  219 bits (559), Expect(2) = 1e-84
 Identities = 111/205 (54%), Positives = 145/205 (70%)
 Frame = +1

Query: 370  QAGNVGVLRGAERFDNARGNRFSTYVQYWIKKSILTLVERHSRGIQIPARLEKVISQVKN 549
            QAGN+GVL+GAERFD+ +G RFSTYVQYWI+KS+ TLV RH+RG++IP  L + I Q++ 
Sbjct: 404  QAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQK 463

Query: 550  AKKTMCRRDGKYIGDDEIAEFTGLPVDKVRLANKCARGVGSIDKEIGIGWRVKFMEVTPD 729
            A+K + +  G+Y  D+EIA+FTGL + K+R A  C R VGS D+     W    +E TPD
Sbjct: 464  ARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPD 523

Query: 730  TSIISANEIITRQHMRKDILKLLEGLHPNEKLVLVHRYGLEDGKCKSLEEVGRLFHVTKE 909
            TSI S  E   +Q  RKDI  LL+GL P E+ +LV RYG  + + KSLEE+GR F+V+KE
Sbjct: 524  TSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKE 583

Query: 910  WIRKLEKGALAKITTEDIQNELRYY 984
            WIRKLEK ALA +  E+I   LR+Y
Sbjct: 584  WIRKLEKTALANLRDEEICQNLRHY 608



 Score =  121 bits (303), Expect(2) = 1e-84
 Identities = 56/99 (56%), Positives = 75/99 (75%)
 Frame = +2

Query: 74  KKRIVIASNEAEMSRGVKEFVELERIRSQLEEESGKXXXXXXXXXXXGIDQKTLRQRLQF 253
           +KR++ A NEAEMS+GVK    LERIR+ LEEE G            G+D+K L+Q+LQF
Sbjct: 310 RKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQF 369

Query: 254 GWYCRDKLIKSTRSLVIYLAKNYRGMGIAFDDLLQCQNI 370
           GWYCRD+L++ST SLV+Y+A+NYRGMG+AF+D+LQ  N+
Sbjct: 370 GWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNL 408


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  227 bits (578), Expect(2) = 1e-84
 Identities = 112/206 (54%), Positives = 153/206 (74%), Gaps = 1/206 (0%)
 Frame = +1

Query: 370 QAGNVGVLRGAERFDNARGNRFSTYVQYWIKKSILTLVERHSRGIQIPARLEKVISQVKN 549
           QAG VGVL+GAERFD+ RG +FSTYVQYWI+KS+ T+V RH+RG+ IP+ + + I+ ++ 
Sbjct: 363 QAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQK 422

Query: 550 AKKTMCRRDG-KYIGDDEIAEFTGLPVDKVRLANKCARGVGSIDKEIGIGWRVKFMEVTP 726
           A+KT+    G KY  D+EIA+ TG  V K+R AN+C + VGSIDK++G  +  KF+E TP
Sbjct: 423 ARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTP 482

Query: 727 DTSIISANEIITRQHMRKDILKLLEGLHPNEKLVLVHRYGLEDGKCKSLEEVGRLFHVTK 906
           DT++ S  E + RQ  R+DI  LLEGL P EK V+V RYGL+D + KSLEE+G+LF V+K
Sbjct: 483 DTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSK 542

Query: 907 EWIRKLEKGALAKITTEDIQNELRYY 984
           EWIRK+E+ A+AK+  +    +LRYY
Sbjct: 543 EWIRKIERRAMAKLRDQPNAEDLRYY 568



 Score =  114 bits (284), Expect(2) = 1e-84
 Identities = 55/95 (57%), Positives = 71/95 (74%)
 Frame = +2

Query: 74  KKRIVIASNEAEMSRGVKEFVELERIRSQLEEESGKXXXXXXXXXXXGIDQKTLRQRLQF 253
           KKR  I+ NE EMS GVK   ++ERIR+QLEEESGK           G+++K L + L +
Sbjct: 269 KKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHY 328

Query: 254 GWYCRDKLIKSTRSLVIYLAKNYRGMGIAFDDLLQ 358
           GWYCRD+L+KSTRSLV++LA+NYRGMGIA +DL+Q
Sbjct: 329 GWYCRDELVKSTRSLVLFLARNYRGMGIAHEDLIQ 363


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  219 bits (559), Expect(2) = 1e-84
 Identities = 111/205 (54%), Positives = 145/205 (70%)
 Frame = +1

Query: 370 QAGNVGVLRGAERFDNARGNRFSTYVQYWIKKSILTLVERHSRGIQIPARLEKVISQVKN 549
           QAGN+GVL+GAERFD+ +G RFSTYVQYWI+KS+ TLV RH+RG++IP  L + I Q++ 
Sbjct: 354 QAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQK 413

Query: 550 AKKTMCRRDGKYIGDDEIAEFTGLPVDKVRLANKCARGVGSIDKEIGIGWRVKFMEVTPD 729
           A+K + +  G+Y  D+EIA+FTGL + K+R A  C R VGS D+     W    +E TPD
Sbjct: 414 ARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPD 473

Query: 730 TSIISANEIITRQHMRKDILKLLEGLHPNEKLVLVHRYGLEDGKCKSLEEVGRLFHVTKE 909
           TSI S  E   +Q  RKDI  LL+GL P E+ +LV RYG  + + KSLEE+GR F+V+KE
Sbjct: 474 TSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKE 533

Query: 910 WIRKLEKGALAKITTEDIQNELRYY 984
           WIRKLEK ALA +  E+I   LR+Y
Sbjct: 534 WIRKLEKTALANLRDEEICQNLRHY 558



 Score =  121 bits (303), Expect(2) = 1e-84
 Identities = 56/99 (56%), Positives = 75/99 (75%)
 Frame = +2

Query: 74  KKRIVIASNEAEMSRGVKEFVELERIRSQLEEESGKXXXXXXXXXXXGIDQKTLRQRLQF 253
           +KR++ A NEAEMS+GVK    LERIR+ LEEE G            G+D+K L+Q+LQF
Sbjct: 260 RKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQF 319

Query: 254 GWYCRDKLIKSTRSLVIYLAKNYRGMGIAFDDLLQCQNI 370
           GWYCRD+L++ST SLV+Y+A+NYRGMG+AF+D+LQ  N+
Sbjct: 320 GWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNL 358


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  219 bits (559), Expect(2) = 2e-84
 Identities = 106/205 (51%), Positives = 146/205 (71%)
 Frame = +1

Query: 370 QAGNVGVLRGAERFDNARGNRFSTYVQYWIKKSILTLVERHSRGIQIPARLEKVISQVKN 549
           QAGN+GVL GAERFD+ RG RFSTYVQYWI+KS+  +V R +RGIQIP  L + I Q++ 
Sbjct: 353 QAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQK 412

Query: 550 AKKTMCRRDGKYIGDDEIAEFTGLPVDKVRLANKCARGVGSIDKEIGIGWRVKFMEVTPD 729
           A+K +   +GKY  DDEIA++TGL + K+  A++C R VGSID++IG     K++E  PD
Sbjct: 413 ARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPD 472

Query: 730 TSIISANEIITRQHMRKDILKLLEGLHPNEKLVLVHRYGLEDGKCKSLEEVGRLFHVTKE 909
           TS+ S  E++ RQHM +D+  LL  L   E+ VL+ R+GL D + KSLEE+GR FHV+KE
Sbjct: 473 TSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKE 532

Query: 910 WIRKLEKGALAKITTEDIQNELRYY 984
           W+R+LEK  + ++  E+    LR+Y
Sbjct: 533 WVRRLEKRVMTRLRNEETCRNLRHY 557



 Score =  120 bits (301), Expect(2) = 2e-84
 Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 10/128 (7%)
 Frame = +2

Query: 17  PSFLLPS----------SLSGNLDSTQAGKKRIVIASNEAEMSRGVKEFVELERIRSQLE 166
           PS  LPS          ++S    ++++  +R++IA NEAEM+RG+K   +LE+IR+ LE
Sbjct: 230 PSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLE 289

Query: 167 EESGKXXXXXXXXXXXGIDQKTLRQRLQFGWYCRDKLIKSTRSLVIYLAKNYRGMGIAFD 346
           EE+ +           G+D K L+Q+L FGWYCRD+LIKSTRSLV+Y A+NYRG GIA +
Sbjct: 290 EETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALE 349

Query: 347 DLLQCQNI 370
           DLLQ  N+
Sbjct: 350 DLLQAGNL 357


>ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
           gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
           polymerase sigma factor sigC; Short=Sigma factor C;
           Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
           sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
           Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
           [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
           [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
           factor SigC [Arabidopsis thaliana]
           gi|7630012|emb|CAB88354.1| sigma factor SigC
           [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
           At3g53920 [Arabidopsis thaliana]
           gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
           C [Arabidopsis thaliana]
          Length = 571

 Score =  224 bits (572), Expect(2) = 1e-83
 Identities = 111/206 (53%), Positives = 152/206 (73%), Gaps = 1/206 (0%)
 Frame = +1

Query: 370 QAGNVGVLRGAERFDNARGNRFSTYVQYWIKKSILTLVERHSRGIQIPARLEKVISQVKN 549
           QAG VGVL+GAERFD+ RG +FSTYVQYWI+KS+ T+V RH+RG+ IP+ + + I+ ++ 
Sbjct: 363 QAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQK 422

Query: 550 AKKTMCRRDG-KYIGDDEIAEFTGLPVDKVRLANKCARGVGSIDKEIGIGWRVKFMEVTP 726
           A+KT+    G KY  D+EIA+ TG  V K+R AN+C + VGSIDK++G  +  KF+E TP
Sbjct: 423 ARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTP 482

Query: 727 DTSIISANEIITRQHMRKDILKLLEGLHPNEKLVLVHRYGLEDGKCKSLEEVGRLFHVTK 906
           DT++ S  E + RQ  R+DI  LLEGL P EK V+V RYGL+D + KSLEE+G+L  V+K
Sbjct: 483 DTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSK 542

Query: 907 EWIRKLEKGALAKITTEDIQNELRYY 984
           EWIRK+E+ A+AK+  +    +LRYY
Sbjct: 543 EWIRKIERRAMAKLRDQPNAEDLRYY 568



 Score =  112 bits (281), Expect(2) = 1e-83
 Identities = 54/95 (56%), Positives = 71/95 (74%)
 Frame = +2

Query: 74  KKRIVIASNEAEMSRGVKEFVELERIRSQLEEESGKXXXXXXXXXXXGIDQKTLRQRLQF 253
           KKR  I+ NE EMS GVK   ++ERIR+QLEEESGK           G+++K L + L +
Sbjct: 269 KKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHY 328

Query: 254 GWYCRDKLIKSTRSLVIYLAKNYRGMGIAFDDLLQ 358
           GWYCRD+L+KSTRSLV++LA+NYRG+GIA +DL+Q
Sbjct: 329 GWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQ 363