BLASTX nr result
ID: Dioscorea21_contig00016817
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00016817
(526 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group] g... 100 7e-31
ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [S... 89 3e-27
ref|NP_001150253.1| ribonucleoprotein [Zea mays] gi|195637832|gb... 87 1e-26
gb|ACF82264.1| unknown [Zea mays] gi|414869196|tpg|DAA47753.1| T... 87 1e-26
dbj|BAJ86616.1| predicted protein [Hordeum vulgare subsp. vulgare] 82 9e-25
>ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein
cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa
Japonica Group] gi|125561943|gb|EAZ07391.1| hypothetical
protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein
OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 269
Score = 99.8 bits (247), Expect(2) = 7e-31
Identities = 50/80 (62%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Frame = -1
Query: 526 VNVELSMYNRERNRGLAFITMASEEEAITALNSLNTYNLDGRVIKVEFSRSLKK-IPTEN 350
V+VELSMYN RNRGLAF+TM SEEEA++ALN LN+ L+ R IKV+F+RS KK +
Sbjct: 100 VDVELSMYNSTRNRGLAFVTMGSEEEALSALNHLNSTTLNDRTIKVDFTRSRKKQYVVPS 159
Query: 349 TPVEKHTVFAGNLSWRVRSK 290
P+ KH+VF GNL+WRVRS+
Sbjct: 160 APMPKHSVFVGNLTWRVRSR 179
Score = 59.3 bits (142), Expect(2) = 7e-31
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = -3
Query: 173 SAEVIFHS-KPRRPAGYGFVTFASKXXXXXAVASFNAMKLMGRRINLVLRDSPEEK 9
S EV+FH+ PRR AGYGFV+F+SK A+++FN KLMGR IN++ +D +K
Sbjct: 193 SVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKLMGRSINVMFKDDNAKK 248
>ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
gi|241942342|gb|EES15487.1| hypothetical protein
SORBIDRAFT_07g029220 [Sorghum bicolor]
Length = 266
Score = 89.4 bits (220), Expect(2) = 3e-27
Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 4/83 (4%)
Frame = -1
Query: 526 VNVELSMYNRERNRGLAFITMASEEEAITALNSLNTYNLDGRVIKVEFSRSLKKIPTE-- 353
V VELSMY+ +NRGLAF+TM SEE+A+ AL LN+ L+ R IKV+F+R KK P +
Sbjct: 99 VGVELSMYSASKNRGLAFVTMGSEEDALAALTHLNSTILNDRKIKVDFARPRKKQPKQPV 158
Query: 352 --NTPVEKHTVFAGNLSWRVRSK 290
+ P+EK+ VF GNL+WRVR++
Sbjct: 159 VVSNPMEKYIVFVGNLTWRVRNR 181
Score = 57.8 bits (138), Expect(2) = 3e-27
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = -3
Query: 176 ISAEVIFHSK-PRRPAGYGFVTFASKXXXXXAVASFNAMKLMGRRINLVLRDSPEEK 9
ISAEVIFH+ PRR AGY FV+F+SK A+++FN LMGR IN++L+D +K
Sbjct: 194 ISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISAFNGKILMGRPINVMLKDENGKK 250
>ref|NP_001150253.1| ribonucleoprotein [Zea mays] gi|195637832|gb|ACG38384.1|
ribonucleoprotein [Zea mays]
Length = 275
Score = 87.4 bits (215), Expect(2) = 1e-26
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 4/83 (4%)
Frame = -1
Query: 526 VNVELSMYNRERNRGLAFITMASEEEAITALNSLNTYNLDGRVIKVEFSRSLKKIPTENT 347
V VELSMY+ +NRGLAF+TM SEEEA+ AL LN+ L+ R IKV+F+R KK P +
Sbjct: 98 VGVELSMYSANKNRGLAFVTMGSEEEALAALTHLNSTILNDRKIKVDFARPRKKQPKQPA 157
Query: 346 PV----EKHTVFAGNLSWRVRSK 290
V EK+ VF GNL+WRVR++
Sbjct: 158 VVSDATEKYVVFVGNLTWRVRNR 180
Score = 57.4 bits (137), Expect(2) = 1e-26
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = -3
Query: 176 ISAEVIFHSK-PRRPAGYGFVTFASKXXXXXAVASFNAMKLMGRRINLVLRDSPEEK 9
+SAEVIFH+ PRR AGY FV+F+SK A+++FN LMGR IN++ +D EK
Sbjct: 193 VSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINVMFKDENGEK 249
>gb|ACF82264.1| unknown [Zea mays] gi|414869196|tpg|DAA47753.1| TPA:
ribonucleoprotein [Zea mays]
Length = 275
Score = 87.4 bits (215), Expect(2) = 1e-26
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 4/83 (4%)
Frame = -1
Query: 526 VNVELSMYNRERNRGLAFITMASEEEAITALNSLNTYNLDGRVIKVEFSRSLKKIPTENT 347
V VELSMY+ +NRGLAF+TM SEEEA+ AL LN+ L+ R IKV+F+R KK P +
Sbjct: 98 VGVELSMYSANKNRGLAFVTMGSEEEALAALTHLNSTILNDRKIKVDFARPRKKQPKQPA 157
Query: 346 PV----EKHTVFAGNLSWRVRSK 290
V EK+ VF GNL+WRVR++
Sbjct: 158 VVSDDTEKYVVFVGNLTWRVRNR 180
Score = 57.4 bits (137), Expect(2) = 1e-26
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = -3
Query: 176 ISAEVIFHSK-PRRPAGYGFVTFASKXXXXXAVASFNAMKLMGRRINLVLRDSPEEK 9
+SAEVIFH+ PRR AGY FV+F+SK A+++FN LMGR IN++ +D EK
Sbjct: 193 VSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINVMFKDENGEK 249
>dbj|BAJ86616.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 192
Score = 82.0 bits (201), Expect(2) = 9e-25
Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Frame = -1
Query: 496 ERNRGLAFITMASEEEAITALNSLNTYNLDGRVIKVEFSRSLKKIP-TENTPVEKHTVFA 320
++NRGLAF+TM SEEEA++AL +LN L+ R IKV+F++ KK P + PVEK+ VF
Sbjct: 32 KKNRGLAFVTMGSEEEALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSAPVEKNVVFV 91
Query: 319 GNLSWRVRSK 290
GNL+WRVRS+
Sbjct: 92 GNLTWRVRSR 101
Score = 56.6 bits (135), Expect(2) = 9e-25
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = -3
Query: 173 SAEVIFHSK-PRRPAGYGFVTFASKXXXXXAVASFNAMKLMGRRINLVLRDSPEEK 9
S EVIFH+ PRR AGYGFV+F+SK A+++FN +LMGR IN++ ++ +K
Sbjct: 115 SVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTFNGKELMGRSINVMFKEDTPKK 170