BLASTX nr result

ID: Dioscorea21_contig00016780 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00016780
         (1309 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178215.1| zinc ion binding / nucleic acid binding [Arabid...   119   2e-24
emb|CCA66008.1| hypothetical protein [Beta vulgaris subsp. vulga...   114   4e-23
dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like...   113   9e-23
emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana] gi|7...   110   8e-22
dbj|BAE79383.1| unnamed protein product [Ipomoea batatas]             109   1e-21

>ref|NP_178215.1| zinc ion binding / nucleic acid binding [Arabidopsis thaliana]
           gi|6598620|gb|AAF18653.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250297|gb|AEC05391.1| zinc
           ion binding / nucleic acid binding protein [Arabidopsis
           thaliana]
          Length = 515

 Score =  119 bits (298), Expect = 2e-24
 Identities = 70/191 (36%), Positives = 97/191 (50%), Gaps = 1/191 (0%)
 Frame = +2

Query: 8   PLEVVKNSLAAMWRGMGPFWVSDMSNGFYLIRCEKPEMIDAVLWEGPWTISGMVLQLTPW 187
           P+ V+   L  +W+  G   V D+   F++IR E  E   A L  GPW + G  L +  W
Sbjct: 91  PISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQDW 150

Query: 188 RDHFQPAFEKLNLAAVWVQLHHLPIEYWQGEILELIGEQFGRLLKADDHTEKLTRTKFAR 367
              F P  + +    VWV+L ++P  Y+   +L  I    GR LK D +T    + +FAR
Sbjct: 151 SSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEIARGLGRPLKVDMNTINFDKGRFAR 210

Query: 368 ICVEIDLSKPLKRGFWIGDDDRRCMVAILYERLPVFCFKCGLVGHGENGCP-SVVSGKSG 544
           +C+E++L+KPLK    I  D  R  VA  YE L   C  CG+ GH  + CP +VV   S 
Sbjct: 211 VCIEVNLAKPLKGTVLINGD--RYFVA--YEGLSKICSSCGIYGHLVHSCPRNVVVKVSA 266

Query: 545 GVECVVDGAPV 577
           G E V D A V
Sbjct: 267 GAETVTDRAVV 277


>emb|CCA66008.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 678

 Score =  114 bits (286), Expect = 4e-23
 Identities = 55/168 (32%), Positives = 90/168 (53%)
 Frame = +2

Query: 14  EVVKNSLAAMWRGMGPFWVSDMSNGFYLIRCEKPEMIDAVLWEGPWTISGMVLQLTPWRD 193
           +++   L   W   G   ++D+ + +Y++R    E  D VL +GPW I    L +  W  
Sbjct: 152 DILVRRLKYKWNLKGDIALTDVGHAYYVVRFNNMEDYDFVLTQGPWLIGDSYLTIRKWVP 211

Query: 194 HFQPAFEKLNLAAVWVQLHHLPIEYWQGEILELIGEQFGRLLKADDHTEKLTRTKFARIC 373
           +F    E +     WV++ HL +EY+  + L  IG + G+++K D +TE + R ++ R C
Sbjct: 212 NFVSDQEPIKKLTAWVRIPHLSVEYFDKQFLHSIGSKIGKVIKIDRNTESMDRGQYVRFC 271

Query: 374 VEIDLSKPLKRGFWIGDDDRRCMVAILYERLPVFCFKCGLVGHGENGC 517
           +E+DLSKPL   F +       +  + YE L + CFKCG +GH E+ C
Sbjct: 272 IEVDLSKPLLSKFRLNGK----VWIVQYEGLRLICFKCGHLGHKEDTC 315


>dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 591

 Score =  113 bits (283), Expect = 9e-23
 Identities = 60/180 (33%), Positives = 91/180 (50%)
 Frame = +2

Query: 11  LEVVKNSLAAMWRGMGPFWVSDMSNGFYLIRCEKPEMIDAVLWEGPWTISGMVLQLTPWR 190
           L  V + L  MW+  G  +V D+   F+++R EK E     L  GPW   G  L +  W 
Sbjct: 92  LAAVSHRLREMWKPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWS 151

Query: 191 DHFQPAFEKLNLAAVWVQLHHLPIEYWQGEILELIGEQFGRLLKADDHTEKLTRTKFARI 370
             F P  +++    +WV++  +P+ ++   IL  + +  GR LK D       R +FAR+
Sbjct: 152 PEFNPLKDEIVTTPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARV 211

Query: 371 CVEIDLSKPLKRGFWIGDDDRRCMVAILYERLPVFCFKCGLVGHGENGCPSVVSGKSGGV 550
           CVE+DL +PL+    +  D  R  VA  YE L   C KCG+ GH  + CP  +S ++  V
Sbjct: 212 CVEVDLKRPLQGALLVNGD--RYYVA--YEGLTNICSKCGIYGHLVHNCPKELSEQAAAV 267


>emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana]
           gi|7268308|emb|CAB78602.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 655

 Score =  110 bits (275), Expect = 8e-22
 Identities = 58/170 (34%), Positives = 88/170 (51%)
 Frame = +2

Query: 11  LEVVKNSLAAMWRGMGPFWVSDMSNGFYLIRCEKPEMIDAVLWEGPWTISGMVLQLTPWR 190
           +EV+   L  +WR  G   V D+   F+++R E  E     L  GPW + G +L +  W 
Sbjct: 107 IEVLSRKLRDLWRPTGGMSVLDLPRQFFMVRFEVEEDYMMALTGGPWRVLGSILMVQAWS 166

Query: 191 DHFQPAFEKLNLAAVWVQLHHLPIEYWQGEILELIGEQFGRLLKADDHTEKLTRTKFARI 370
             F P  + +    VWV++ +LP+ ++  EIL  I    G+ +K D  T +  R +FAR+
Sbjct: 167 PEFNPLRDVIETTPVWVRVANLPVTFYHNEILLGIAAGLGKPIKVDLTTLRKERGRFARV 226

Query: 371 CVEIDLSKPLKRGFWIGDDDRRCMVAILYERLPVFCFKCGLVGHGENGCP 520
           CVE++L  PLK G  + + +R     + YE L   C  CG+ GH  N CP
Sbjct: 227 CVEVNLKNPLK-GTLVVNGER---YFVSYEGLQTICSLCGIYGHTVNNCP 272


>dbj|BAE79383.1| unnamed protein product [Ipomoea batatas]
          Length = 532

 Score =  109 bits (273), Expect = 1e-21
 Identities = 70/235 (29%), Positives = 110/235 (46%)
 Frame = +2

Query: 17  VVKNSLAAMWRGMGPFWVSDMSNGFYLIRCEKPEMIDAVLWEGPWTISGMVLQLTPWRDH 196
           V+     ++W+  G   + D+  G +++R +  +    VL +GPW I    L    W  +
Sbjct: 117 VLNQRAPSLWQLKGRVQIIDIGFGCFVMRFDDKKDYLHVLLDGPWKIFDNYLITQRWVPN 176

Query: 197 FQPAFEKLNLAAVWVQLHHLPIEYWQGEILELIGEQFGRLLKADDHTEKLTRTKFARICV 376
           F+P   K    AVWV+L  L +EY++ + ++ I E  G+ L+ D  T    + +FAR  V
Sbjct: 177 FEPRTAKFQKMAVWVRLPELSMEYFRDDTIKAILENIGKPLRLDRTTMAREKGRFARAAV 236

Query: 377 EIDLSKPLKRGFWIGDDDRRCMVAILYERLPVFCFKCGLVGHGENGCPSVVSGKSGGVEC 556
           EIDL KPL    W+  D ++    + YE L V CF CG+VGH E  CP     +    E 
Sbjct: 237 EIDLGKPLVSEIWVMGDVQK----VEYEGLHVVCFGCGVVGHREQACP---LARPTAPET 289

Query: 557 VVDGAPVLQPALSAMQLDVSGGVPHSALAAKPSPGDLEEVLDQDAGDQFGPWMVV 721
           +  G+     A +A                +P+ G  + V       ++GPWM+V
Sbjct: 290 MATGSNTETAADTA--------------EPQPAEGPADAVTQPAERRRYGPWMIV 330


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