BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00015520
         (367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...    74   2e-11
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...    72   4e-11
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                       64   2e-08
ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|2...    61   8e-08
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...    56   3e-06

>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
 Frame = +1

Query: 1   ASSKNSTVAKMSSNSHSGIPV-NKRLPAPKALAQHEDTSLSLTTKANWFSNYDHVEESDP 177
           A++KN  VAK SSN     P  N+   + KAL +H DT+ + +  A WF  +D  EE   
Sbjct: 44  ATTKNVIVAKKSSNYGPSFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESS 103

Query: 178 DLS-SWHDLIVFQKSMLEKQWKLSFNQT-STTAAPEENSKKRVIIGSGV 318
            L  S   L++ QKSMLEKQW LSF +T S+ +  ++N+KK  +  SGV
Sbjct: 104 ALDYSVEALLLLQKSMLEKQWNLSFERTNSSDSTSKKNNKKIPVTCSGV 152


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 508

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
 Frame = +1

Query: 4   SSKNSTVAKMSSNSHSGIPV-NKRLPAPKALAQHEDTSLSLTTKANWFSNYDHVEESDPD 180
           S+K   VAK SSN     P  N+   + KAL +H DT+ + +T A  F  ++ +EE   D
Sbjct: 44  STKTLIVAKKSSNYGPSFPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSD 103

Query: 181 LS-SWHDLIVFQKSMLEKQWKLSFNQTSTTAAPEENSKKRV-IIGSGV 318
           L  S   L++ QKSMLEKQW LSF +T ++ +P   S+K++ +  SGV
Sbjct: 104 LDYSVEALLLLQKSMLEKQWNLSFERTDSSDSPSRKSQKKIPVTCSGV 151


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
 Frame = +1

Query: 4   SSKNSTVAKMSSNSHSGIPVNKRLPAPKALAQHEDTSLSLTTKANWFSNYDHVE-ESDPD 180
           S KN   AK SS+       +++  + K+L +H D +   +   +WF  Y+ ++ ESD +
Sbjct: 45  SIKNVITAKKSSDYSPSCVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDE 104

Query: 181 LSSWHDLIVFQKSMLEKQWKLSFNQTSTTAAP--EENSKKRVIIGSG 315
             S   L++ QKSMLEKQW LS  QT  TA+P  E+ SKK  I  SG
Sbjct: 105 DESVEVLLLLQKSMLEKQWNLSLEQT-LTASPQHEKKSKKMHITCSG 150


>ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|222857613|gb|EEE95160.1|
           predicted protein [Populus trichocarpa]
          Length = 499

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
 Frame = +1

Query: 4   SSKNSTVAKMSSNSHSGIPVNKRLP-APKALAQHEDTSLSLTTKANWFSNYDHVEESDPD 180
           ++K+  VAK SS      P + R P + KAL +  DT+ + +T A WF   D  EE    
Sbjct: 45  TTKSVIVAKKSSKYGPSFPSSYRNPHSNKALKELIDTASASSTVATWFKTLDDFEEESSV 104

Query: 181 LS-SWHDLIVFQKSMLEKQWKLSFNQTSTTAAPEENSKKRV-IIGSGV 318
           L  S   LI+ QKSMLEKQW LSF   +++ +  + S K++ +  SGV
Sbjct: 105 LDYSVEALILLQKSMLEKQWNLSFESINSSDSKIKKSNKKIPVTCSGV 152


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
           gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
           polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
 Frame = +1

Query: 1   ASSKNSTVAKMSSNSHSGIPVNKRLPAP--KALAQHEDTSLSLTTKANWFSNYDHVEESD 174
           +SSK+  +AK S+N     P + R      KA+ +H +T  S   +  W +     +E  
Sbjct: 44  SSSKSVVIAKSSANFSPRYPSSNRHSQQCIKAVKEHVETPSSPIAEP-WHNTTSWEDEET 102

Query: 175 PDLSSWHDLIVFQKSMLEKQWKLSFNQTSTTAAPEENSKKRV-IIGSGV 318
               +   L++ QKSMLEKQW LSF QT +T  P+E + K+V +  SGV
Sbjct: 103 ELKYTVEALLLLQKSMLEKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGV 151