BLASTX nr result

ID: Dioscorea21_contig00015300 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00015300
         (215 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001175213.1| Os07g0500000 [Oryza sativa Japonica Group] g...    84   1e-16
gb|ABB47665.1| retrotransposon protein, putative, unclassified, ...    83   2e-16
ref|NP_001173078.1| Os02g0616666 [Oryza sativa Japonica Group] g...    61   8e-08
emb|CCI55315.1| PH01B001I13.11 [Phyllostachys edulis]                  60   1e-07
emb|CAN73022.1| hypothetical protein VITISV_004050 [Vitis vinifera]    59   4e-07

>ref|NP_001175213.1| Os07g0500000 [Oryza sativa Japonica Group]
           gi|255677790|dbj|BAH93941.1| Os07g0500000 [Oryza sativa
           Japonica Group]
          Length = 662

 Score = 84.0 bits (206), Expect(2) = 1e-16
 Identities = 37/43 (86%), Positives = 41/43 (95%)
 Frame = -2

Query: 175 VFLGYSLEHKGYRCYDPSARRIRISRDVTFDESRPYFYSFAAQ 47
           VFLGYSLEHKGYRCYDPSARRIRISRDVTFDE++P+FYS  +Q
Sbjct: 353 VFLGYSLEHKGYRCYDPSARRIRISRDVTFDENKPFFYSSTSQ 395



 Score = 27.3 bits (59), Expect(2) = 1e-16
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 215 PHECTKLTAQSIECL 171
           P E TKLTAQS+EC+
Sbjct: 339 PRERTKLTAQSVECV 353


>gb|ABB47665.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group] gi|78708691|gb|ABB47666.1|
           retrotransposon protein, putative, unclassified,
           expressed [Oryza sativa Japonica Group]
          Length = 1682

 Score = 82.8 bits (203), Expect(2) = 2e-16
 Identities = 37/43 (86%), Positives = 40/43 (93%)
 Frame = -2

Query: 175 VFLGYSLEHKGYRCYDPSARRIRISRDVTFDESRPYFYSFAAQ 47
           VFLGYSLEHKGYRCYDPSARRIRISRDVTFDE++P+FYS   Q
Sbjct: 575 VFLGYSLEHKGYRCYDPSARRIRISRDVTFDENKPFFYSSTNQ 617



 Score = 27.3 bits (59), Expect(2) = 2e-16
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 215 PHECTKLTAQSIECL 171
           P E TKLTAQS+EC+
Sbjct: 561 PRERTKLTAQSVECV 575


>ref|NP_001173078.1| Os02g0616666 [Oryza sativa Japonica Group]
           gi|255671092|dbj|BAH91807.1| Os02g0616666 [Oryza sativa
           Japonica Group]
          Length = 1228

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = -2

Query: 154 EHKGYRCYDPSARRIRISRDVTFDESRPYF 65
           EHKGYRCYDP ARR+RISR VTFDESRPY+
Sbjct: 372 EHKGYRCYDPVARRMRISRHVTFDESRPYY 401


>emb|CCI55315.1| PH01B001I13.11 [Phyllostachys edulis]
          Length = 1385

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 25/34 (73%), Positives = 30/34 (88%)
 Frame = -2

Query: 166 GYSLEHKGYRCYDPSARRIRISRDVTFDESRPYF 65
           G S +HKGYRC+DP  RR+RISRDVTFDESRP++
Sbjct: 727 GNSADHKGYRCWDPVGRRMRISRDVTFDESRPFY 760


>emb|CAN73022.1| hypothetical protein VITISV_004050 [Vitis vinifera]
          Length = 767

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/43 (58%), Positives = 33/43 (76%)
 Frame = -2

Query: 175 VFLGYSLEHKGYRCYDPSARRIRISRDVTFDESRPYFYSFAAQ 47
           VFLGYS   KGY+CY+PSAR+  IS DVTF E++P+F+  + Q
Sbjct: 61  VFLGYSSTQKGYKCYNPSARKFYISADVTFTENKPFFHKSSLQ 103


Top