BLASTX nr result
ID: Dioscorea21_contig00014815
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00014815
(1132 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACN27500.1| unknown [Zea mays] gi|224030613|gb|ACN34382.1| un... 288 2e-75
gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays] 287 3e-75
ref|NP_001131224.1| uncharacterized protein LOC100192533 [Zea ma... 287 4e-75
emb|CBI39565.3| unnamed protein product [Vitis vinifera] 280 6e-73
ref|XP_002282861.1| PREDICTED: DNA polymerase III polC-type-like... 280 6e-73
>gb|ACN27500.1| unknown [Zea mays] gi|224030613|gb|ACN34382.1| unknown [Zea mays]
gi|414866403|tpg|DAA44960.1| TPA: DNA polymerase III
subunit epsilon isoform 1 [Zea mays]
gi|414866404|tpg|DAA44961.1| TPA: DNA polymerase III
subunit epsilon isoform 2 [Zea mays]
gi|414866405|tpg|DAA44962.1| TPA: DNA polymerase III
subunit epsilon isoform 3 [Zea mays]
Length = 315
Score = 288 bits (737), Expect = 2e-75
Identities = 151/310 (48%), Positives = 212/310 (68%), Gaps = 1/310 (0%)
Frame = +1
Query: 91 MSLTGMWLANFHQGRNSLASSCRIKLLRFHTVLASKEVVCPRKWILRPTTATVEERXXXX 270
MSL+ + A FH RNS+ +C ++ L++H+ L + + R RP + TV R
Sbjct: 1 MSLSSICCAKFHLLRNSIGDTCSVRWLKYHSRLIYETFLSSRIHQSRPPSTTVLARSTRK 60
Query: 271 XXXXXXXXXLTI-PKTVGSSANICVGETKDHEPKTVQNIGIQQKVTENRVTDRPAVFIVV 447
+ K+V SS + +++ + K++ ++++ +E + T+ PA +V
Sbjct: 61 GSKQSFSNGRHLHSKSVESSIEV-FKQSELEQLKSLHCYNVEEEFSEVK-TEWPATILVF 118
Query: 448 DIETTGFSRSKDRIIEIAFRDLNGGKNSTFQTLVRPDKLVLNDNIHGISSQMVNRPGVPR 627
DIETTGFSR DRIIE A RDL GGKNSTFQTL+ P+K V N +HGI++ M+ RP VPR
Sbjct: 119 DIETTGFSRRDDRIIEFAVRDLMGGKNSTFQTLINPEKDVKNTYVHGINNSMLCRPDVPR 178
Query: 628 FDELIPIILQYVKSRQIDGKQVVFIAHNGRRFDIPFIISEFQRCSTEIPDDWLFLDTLPL 807
F E+IPI+LQYV SRQ+DGK V+++AHNGR FD+PF++ EF+RC E+P DWLF+DTLP+
Sbjct: 179 FGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFVDTLPI 238
Query: 808 ASKLVKPDGSKLESVSLNALQEHYKVPLVGPAHRAMQDVITLSSVFSRITFDLRLTFPEI 987
A +LV +GSKL SVSL L+E YK+PL G AHRAMQDV TLS V ++TF+L+LT P++
Sbjct: 239 AKQLVDSNGSKLSSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTFELKLTVPQL 298
Query: 988 MDRVFRASDL 1017
+++ FRASDL
Sbjct: 299 LEKSFRASDL 308
>gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays]
Length = 315
Score = 287 bits (735), Expect = 3e-75
Identities = 151/310 (48%), Positives = 212/310 (68%), Gaps = 1/310 (0%)
Frame = +1
Query: 91 MSLTGMWLANFHQGRNSLASSCRIKLLRFHTVLASKEVVCPRKWILRPTTATVEERXXXX 270
MSL+ + A FH RNS+ +C ++ L++H+ L + + R RP + TV R
Sbjct: 1 MSLSSICCAKFHLLRNSIGDTCSVRWLKYHSRLIYETFLSIRIHQSRPPSTTVLARSTRK 60
Query: 271 XXXXXXXXXLTI-PKTVGSSANICVGETKDHEPKTVQNIGIQQKVTENRVTDRPAVFIVV 447
+ K+V SS + +++ + K++ ++++ +E + T+ PA +V
Sbjct: 61 GSKQSFSNGRHLHSKSVESSIEV-FKQSELEQLKSLHCYNVEEEFSEVK-TEWPATILVF 118
Query: 448 DIETTGFSRSKDRIIEIAFRDLNGGKNSTFQTLVRPDKLVLNDNIHGISSQMVNRPGVPR 627
DIETTGFSR DRIIE A RDL GGKNSTFQTL+ P+K V N +HGI++ M+ RP VPR
Sbjct: 119 DIETTGFSRRDDRIIEFAVRDLMGGKNSTFQTLINPEKDVKNTYVHGINNSMLCRPDVPR 178
Query: 628 FDELIPIILQYVKSRQIDGKQVVFIAHNGRRFDIPFIISEFQRCSTEIPDDWLFLDTLPL 807
F E+IPI+LQYV SRQ+DGK V+++AHNGR FD+PF++ EF+RC E+P DWLF+DTLP+
Sbjct: 179 FGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFVDTLPI 238
Query: 808 ASKLVKPDGSKLESVSLNALQEHYKVPLVGPAHRAMQDVITLSSVFSRITFDLRLTFPEI 987
A +LV +GSKL SVSL L+E YK+PL G AHRAMQDV TLS V ++TF+L+LT P++
Sbjct: 239 AKQLVDSNGSKLSSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTFELKLTVPQL 298
Query: 988 MDRVFRASDL 1017
+++ FRASDL
Sbjct: 299 LEKSFRASDL 308
>ref|NP_001131224.1| uncharacterized protein LOC100192533 [Zea mays]
gi|194690922|gb|ACF79545.1| unknown [Zea mays]
Length = 315
Score = 287 bits (734), Expect = 4e-75
Identities = 150/310 (48%), Positives = 212/310 (68%), Gaps = 1/310 (0%)
Frame = +1
Query: 91 MSLTGMWLANFHQGRNSLASSCRIKLLRFHTVLASKEVVCPRKWILRPTTATVEERXXXX 270
MSL+ + A FH RNS+ +C ++ L++H+ L + + R RP + TV R
Sbjct: 1 MSLSSICCAKFHLLRNSIGDTCSVRWLKYHSRLIYETFLSSRIHQSRPPSTTVLARSTRK 60
Query: 271 XXXXXXXXXLTI-PKTVGSSANICVGETKDHEPKTVQNIGIQQKVTENRVTDRPAVFIVV 447
+ K+V SS + +++ + K++ ++++ +E + T+ PA +V
Sbjct: 61 GSKQSFSNGRHLHSKSVESSIEV-FKQSELEQLKSLHCYNVEEEFSEVK-TEWPATILVF 118
Query: 448 DIETTGFSRSKDRIIEIAFRDLNGGKNSTFQTLVRPDKLVLNDNIHGISSQMVNRPGVPR 627
DIETTGFSR DRIIE A RDL GGKN+TFQTL+ P+K V N +HGI++ M+ RP VPR
Sbjct: 119 DIETTGFSRRDDRIIEFAVRDLMGGKNNTFQTLINPEKDVKNTYVHGINNSMLCRPDVPR 178
Query: 628 FDELIPIILQYVKSRQIDGKQVVFIAHNGRRFDIPFIISEFQRCSTEIPDDWLFLDTLPL 807
F E+IPI+LQYV SRQ+DGK V+++AHNGR FD+PF++ EF+RC E+P DWLF+DTLP+
Sbjct: 179 FGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFVDTLPI 238
Query: 808 ASKLVKPDGSKLESVSLNALQEHYKVPLVGPAHRAMQDVITLSSVFSRITFDLRLTFPEI 987
A +LV +GSKL SVSL L+E YK+PL G AHRAMQDV TLS V ++TF+L+LT P++
Sbjct: 239 AKQLVDSNGSKLSSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTFELKLTVPQL 298
Query: 988 MDRVFRASDL 1017
+++ FRASDL
Sbjct: 299 LEKSFRASDL 308
>emb|CBI39565.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 280 bits (715), Expect = 6e-73
Identities = 153/336 (45%), Positives = 210/336 (62%), Gaps = 2/336 (0%)
Frame = +1
Query: 37 MCILISEAL*CGIHCLQNMSLTGMWLANFHQGRNSLASSCRIKLLRFHTVLASKEVVCPR 216
MC I + C IH +L W +FH ++ SS KLL HT E R
Sbjct: 1 MCFSILQVPRCRIH-----TLASFWRESFHSLGSTCRSSSSFKLLGSHT--NGLEGGNSR 53
Query: 217 KWILRPTTATVEERXXXXXXXXXXXXXLTIPK-TVGSSANICVGETKDHEPKTVQNIGIQ 393
+W RP T E R I TV +S + V + + E + +Q +Q
Sbjct: 54 RWTRRPITTKSEGRNKYTQSSKRSNIRHEIVDGTVSTSTKLIVDKLEISESQRIQYCEVQ 113
Query: 394 QKVTENRVTDRPAVFIVVDIETTGFSRSKDRIIEIAFRDLNGGKNSTFQTLVRPDKLVLN 573
+KVTEN+ + IV D ETTG SR+ DRIIEI +DL GG+NSTFQTLV P+++V N
Sbjct: 114 EKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLGGGENSTFQTLVNPERIVPN 173
Query: 574 DNIHGISSQMVNRPGVPRFDELIPIILQYVKSRQIDGKQVVFIAHNGRRFDIPFIISEFQ 753
++HGI++ MVNRP VPR+ +LIPI+LQYV+SRQ G ++++AHNGR FD+PF+I+EF
Sbjct: 174 PHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFS 233
Query: 754 RCSTEIPDDWLFLDTLPLASKLVKPDGSKL-ESVSLNALQEHYKVPLVGPAHRAMQDVIT 930
RC+TE+P +W FLDTLPLA +L+K GS L SL AL+E+Y++PLVGPAHR + DV T
Sbjct: 234 RCNTEVPPNWRFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYT 293
Query: 931 LSSVFSRITFDLRLTFPEIMDRVFRASDLIKHEQ*K 1038
LS V +TF+L+++ ++DR F ASD+I ++ K
Sbjct: 294 LSQVLQMLTFNLKVSVANLLDRSFTASDIINPKKKK 329
>ref|XP_002282861.1| PREDICTED: DNA polymerase III polC-type-like isoform 2 [Vitis
vinifera] gi|225450651|ref|XP_002282855.1| PREDICTED: DNA
polymerase III polC-type-like isoform 1 [Vitis vinifera]
Length = 337
Score = 280 bits (715), Expect = 6e-73
Identities = 153/336 (45%), Positives = 210/336 (62%), Gaps = 2/336 (0%)
Frame = +1
Query: 37 MCILISEAL*CGIHCLQNMSLTGMWLANFHQGRNSLASSCRIKLLRFHTVLASKEVVCPR 216
MC I + C IH +L W +FH ++ SS KLL HT E R
Sbjct: 6 MCFSILQVPRCRIH-----TLASFWRESFHSLGSTCRSSSSFKLLGSHT--NGLEGGNSR 58
Query: 217 KWILRPTTATVEERXXXXXXXXXXXXXLTIPK-TVGSSANICVGETKDHEPKTVQNIGIQ 393
+W RP T E R I TV +S + V + + E + +Q +Q
Sbjct: 59 RWTRRPITTKSEGRNKYTQSSKRSNIRHEIVDGTVSTSTKLIVDKLEISESQRIQYCEVQ 118
Query: 394 QKVTENRVTDRPAVFIVVDIETTGFSRSKDRIIEIAFRDLNGGKNSTFQTLVRPDKLVLN 573
+KVTEN+ + IV D ETTG SR+ DRIIEI +DL GG+NSTFQTLV P+++V N
Sbjct: 119 EKVTENKDLAKLVTVIVFDTETTGLSRANDRIIEIGLQDLGGGENSTFQTLVNPERIVPN 178
Query: 574 DNIHGISSQMVNRPGVPRFDELIPIILQYVKSRQIDGKQVVFIAHNGRRFDIPFIISEFQ 753
++HGI++ MVNRP VPR+ +LIPI+LQYV+SRQ G ++++AHNGR FD+PF+I+EF
Sbjct: 179 PHVHGITTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFS 238
Query: 754 RCSTEIPDDWLFLDTLPLASKLVKPDGSKL-ESVSLNALQEHYKVPLVGPAHRAMQDVIT 930
RC+TE+P +W FLDTLPLA +L+K GS L SL AL+E+Y++PLVGPAHR + DV T
Sbjct: 239 RCNTEVPPNWRFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYT 298
Query: 931 LSSVFSRITFDLRLTFPEIMDRVFRASDLIKHEQ*K 1038
LS V +TF+L+++ ++DR F ASD+I ++ K
Sbjct: 299 LSQVLQMLTFNLKVSVANLLDRSFTASDIINPKKKK 334