BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00014520
         (207 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAS86819.1| RNA polymerase II second largest subunit, partial...   108   3e-22
gb|AAW22929.1| RNA polymerase II second largest subunit [Musa ve...   107   8e-22
emb|CAD88887.1| DNA-directed RNA polymerase subunit B [Fagonia l...   105   5e-21
emb|CAD89689.1| RNA polymerase II, second largest subunit [Ilex ...   104   7e-21
gb|AAY85209.1| RNA polymerase II second largest subunit [Glauciu...   104   7e-21

>gb|AAS86819.1| RNA polymerase II second largest subunit, partial [Dioscorea
           sansibarensis]
          Length = 572

 Score =  108 bits (271), Expect = 3e-22
 Identities = 48/49 (97%), Positives = 49/49 (100%)
 Frame = +3

Query: 60  NDLVNARQNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 206
           NDL+NARQNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY
Sbjct: 166 NDLINARQNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 214


>gb|AAW22929.1| RNA polymerase II second largest subunit [Musa velutina]
          Length = 561

 Score =  107 bits (268), Expect = 8e-22
 Identities = 48/49 (97%), Positives = 49/49 (100%)
 Frame = +3

Query: 60  NDLVNARQNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 206
           NDLVNARQNPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY
Sbjct: 162 NDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 210


>emb|CAD88887.1| DNA-directed RNA polymerase subunit B [Fagonia lahovarii]
          Length = 484

 Score =  105 bits (261), Expect = 5e-21
 Identities = 46/49 (93%), Positives = 48/49 (97%)
 Frame = +3

Query: 60  NDLVNARQNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 206
           NDL+ ARQNPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY
Sbjct: 78  NDLIQARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 126


>emb|CAD89689.1| RNA polymerase II, second largest subunit [Ilex x meserveae]
          Length = 272

 Score =  104 bits (260), Expect = 7e-21
 Identities = 47/49 (95%), Positives = 48/49 (97%)
 Frame = +3

Query: 60  NDLVNARQNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 206
           NDLV+AR NPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY
Sbjct: 165 NDLVSARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 213


>gb|AAY85209.1| RNA polymerase II second largest subunit [Glaucium flavum]
          Length = 219

 Score =  104 bits (260), Expect = 7e-21
 Identities = 47/49 (95%), Positives = 48/49 (97%)
 Frame = +3

Query: 60  NDLVNARQNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 206
           NDLV+AR NPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY
Sbjct: 168 NDLVSARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 216