BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00013062
         (4149 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polyme...  1031   0.0  
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S...  1025   0.0  
emb|CBI21038.3| unnamed protein product [Vitis vinifera]             1025   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1025   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1022   0.0  

>ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
            [Brachypodium distachyon]
          Length = 1208

 Score = 1031 bits (2665), Expect(2) = 0.0
 Identities = 497/713 (69%), Positives = 591/713 (82%), Gaps = 1/713 (0%)
 Frame = -2

Query: 2477 KKTTVFNRVRNILSDGFHLCGRKYSFLAFSSNQLRDRSAWFFADQPNTTADTIRHWMGKF 2298
            +KT V+ RV+  L++GFH+CGRKYSFLAFSSNQLRDRSAWFFA+   TT ++IR WMG+F
Sbjct: 498  QKTAVYKRVKMFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDSKTTVESIRKWMGRF 557

Query: 2297 SNRNVAKCAARMGQCFSSTYATVIVPAKDVNLELDDIERNGYVFSDGIGKITPKLALEVT 2118
            +++NVAK AARMGQCFSSTYATV+V   +VN  L+D+ERN Y FSDGIGKITP LA+EV 
Sbjct: 558  TSKNVAKHAARMGQCFSSTYATVMVKPDEVNESLEDVERNNYTFSDGIGKITPDLAMEVA 617

Query: 2117 EKLQLGETP-SAFQIRYAGCKGVIAVWPENSDGIHLSLRPSMNKFESSHNVLEVASWTRF 1941
            EKLQL ++P SA+QIRYAG KGVIAVW  N++GI LSLRPSM KFES H+VLEV SWTRF
Sbjct: 618  EKLQLMDSPPSAYQIRYAGYKGVIAVWQGNNNGIRLSLRPSMKKFESKHSVLEVVSWTRF 677

Query: 1940 QPGFLNRQIVTLLSSLGVPDNVFARMQDSMISKLNQMLIDVDVAFEVLTTSCSEQGNVAA 1761
            QPGFLNRQI+ LLSSL V D++F++MQ+SM+  LN++L+D DVAFEV+TTSC+EQGN AA
Sbjct: 678  QPGFLNRQIILLLSSLNVSDDIFSQMQESMLFNLNKILLDSDVAFEVVTTSCAEQGNTAA 737

Query: 1760 MMLSAGFKPQTEPHLKAMLSCIRSAQLGDLLEKARIFVPMGRWLMGCLDEIGVLEHGQCF 1581
            +MLSAGF P TEPHL+ ML  IRSAQL DLLEK RIFVP GRWLMGCLDE+GVLE GQCF
Sbjct: 738  LMLSAGFGPGTEPHLRGMLLAIRSAQLQDLLEKTRIFVPKGRWLMGCLDELGVLEQGQCF 797

Query: 1580 IQASIPSLTNCFSKHGSRFSGLKNDRHVVVGTVVIAKNPCLHPGDIRILEAVDIPALHHL 1401
            +QAS  SL  CF KHGSRFS  KN   ++VGTVVIAKNPCLHPGD+RILEAVD+P LHHL
Sbjct: 798  VQASAASLDRCFLKHGSRFSANKNT-DIIVGTVVIAKNPCLHPGDVRILEAVDVPELHHL 856

Query: 1400 VDCLIFPQKGDRPHANEASGSDLDGDLYFVTWDECLIPPGKRSWVPMDYTPAVAKQMPRN 1221
            VDCL+FPQKG+RPH NEASGSDLDGDLYFVTWDE L+PPGK+SW PMDY+PA AKQ  R 
Sbjct: 857  VDCLVFPQKGERPHPNEASGSDLDGDLYFVTWDEKLVPPGKKSWNPMDYSPAEAKQQQRQ 916

Query: 1220 VNHRDIIDFFTKNMVNENLGVICNAHVVHADVSEYGALDEKCLQLAELAATAVDFPKTGK 1041
            V+  DI+DFF KNMVNENLG ICNAHVVHAD+SEYGA+DEKC++LAELAATAVDFPKTGK
Sbjct: 917  VSQHDIVDFFLKNMVNENLGPICNAHVVHADLSEYGAMDEKCIRLAELAATAVDFPKTGK 976

Query: 1040 VVTMPQSLKPKLYPDFMGKENSLSYKSEKILGKLYRKLKDAYGEDMACEPFCTYEDLPFD 861
            +VTMP  L+PK+YPDFM KE S SYKSEKILG+LYR +++A G D+  E  CT  DL +D
Sbjct: 977  LVTMPPELRPKIYPDFMLKEESRSYKSEKILGRLYRSIQEASGGDLVSEEACTLNDLLYD 1036

Query: 860  TELDVPGASAYLSDAWFHKCSYERQLNALLGQYGISSEGEIVTGHIWSLPKYNSRRQGEL 681
            T+L+VPGAS +L+ AW  KC+YE QLN LL Q  + +E E+VTGH+WSLPKYNSR+QGE+
Sbjct: 1037 TDLEVPGASRFLTSAWECKCNYEGQLNVLLNQSRVCTEAELVTGHVWSLPKYNSRKQGEI 1096

Query: 680  KERLKNAYSALHKEFRHVFETIGADSGHLTDDEKNALYECKASAWYQVTYRPLWVKKSSE 501
            +ER+KNAY+AL KE+R VFE++  D   +TDDEKN LYE KASAWYQVTY P WV+K   
Sbjct: 1097 RERIKNAYAALQKEYRSVFESL-TDQCQITDDEKNLLYERKASAWYQVTYHPKWVEKLRA 1155

Query: 500  ITGADGNVIPSRLSFAWISADYLVRIKLKSQERKRVDCKKPIDHLADYLLERL 342
            +   DG   P+RLSFAWI+ DYLVRIKL+S    + + +KP++ LA Y+ ER+
Sbjct: 1156 MLDEDGEERPARLSFAWIAVDYLVRIKLRSHGGVKAEGRKPVERLAAYISERI 1208



 Score =  498 bits (1283), Expect(2) = 0.0
 Identities = 247/488 (50%), Positives = 335/488 (68%), Gaps = 13/488 (2%)
 Frame = -1

Query: 3897 EMVVTQVSFGGFDESVSAKELTDYLEFEAGLIWRCRLKTSWTPPDSYPDF--GITDMFGK 3724
            ++V TQVS GGF   VSA EL D+LE+EAGL+WRCR+KTSWTPPDS+PDF        G 
Sbjct: 15   DLVTTQVSLGGFGAGVSASELADFLEYEAGLVWRCRVKTSWTPPDSFPDFLRSTASASGA 74

Query: 3723 PRKDDFMKVAPHAFVHFASPDAAKKAINAAGRCELVLNGHPLRVNAGTESSFRVNRRRTT 3544
            P    + +V PHAFVHFA P+AA++A +AAG+ EL+  G PL + + ++SS R +RR+  
Sbjct: 75   P-PPPYDRVPPHAFVHFARPEAARRATDAAGKSELLFGGKPLLIASASDSSLRASRRQNI 133

Query: 3543 DPFKFSNVYVEIGTLVRKYD-----FWVSWKGPDSGADFVIDPFDGCCKIHFSKETPFSF 3379
             PF+F++  +E+G+ +   D     F  +W+GP +G +F++DPFD CC++ F+++T F+F
Sbjct: 134  KPFRFADAVLEVGSFLAPGDEAPEAFLAAWRGPAAGLEFLVDPFDACCRLIFTRDTAFAF 193

Query: 3378 KSTREMAVIKCDFKVEFLVRDIDRIEVYKDQAPFMLQLNLTSAPCVYYRTAEDDIHVSVP 3199
               RE+ V+ CD K+EF V D+  + VY++    +L+L  T+AP VYYRTA+DDIHVSVP
Sbjct: 194  PGYREVPVMGCDVKLEFSVGDVAAVRVYRNDCSLLLRL--TAAPRVYYRTADDDIHVSVP 251

Query: 3198 FNLLDDEDPWIRTTDFTASGAIGRCSSYRVSLSPRFGHKLEKALAYMTEHRI------AE 3037
            F+LLDD+DPWIRTTD T SGAIGRC  YR+ ++PR    +++ALAYM   R+        
Sbjct: 252  FDLLDDDDPWIRTTDITMSGAIGRCGMYRIKVAPRKWIMMDRALAYMKGQRVLIVESTVW 311

Query: 3036 SRPNYQIVVQDEPDFGICMPDSIFCVQNKNGISFATMYMVNAVLHKGIVNQHQLSEEFFN 2857
            S P   + V+DEP+F   M D  FCVQ+  G+ F  +++VNA++HKGI+NQHQL+ EF +
Sbjct: 312  SGPRRGLKVRDEPEFEEPMQDLFFCVQHAEGLKFPVLFLVNALVHKGIINQHQLTPEFLS 371

Query: 2856 LLRSQNDLVNAASLRHIWAYKRPIFDALRRLKLVQEWXXXXXXXXXXXXXSVDNIEVRRL 2677
            LL  ++D VN A+L+  W  K P+F+A +RL+                    DN+EVRRL
Sbjct: 372  LLSGRDDDVNVAALKEFWGDKFPVFNARKRLEHAHRRVASNPKLLRSGKVGDDNVEVRRL 431

Query: 2676 VITPTKAYCLPPETELSNRVLRKYKDIADRFLRVTFMDEGMQRLNANVLTSFTAPIVRDI 2497
            VITPT A CLPP+ ELSNRVLR Y ++ADRFLRVTFMDEGMQ LN NVL  +TAPIV+ +
Sbjct: 432  VITPTSASCLPPQIELSNRVLRHYHEVADRFLRVTFMDEGMQSLNNNVLNFYTAPIVKAL 491

Query: 2496 TLNSFPQK 2473
              NSF QK
Sbjct: 492  RPNSFQQK 499


>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
            gi|241929916|gb|EES03061.1| hypothetical protein
            SORBIDRAFT_03g022880 [Sorghum bicolor]
          Length = 1207

 Score = 1025 bits (2651), Expect(2) = 0.0
 Identities = 484/708 (68%), Positives = 588/708 (83%), Gaps = 1/708 (0%)
 Frame = -2

Query: 2474 KTTVFNRVRNILSDGFHLCGRKYSFLAFSSNQLRDRSAWFFADQPNTTADTIRHWMGKFS 2295
            KTTV+ R++  L++GFH+CGRKYSFLAFSSNQLRDRSAWFFA+    T +TIR WMG+F+
Sbjct: 496  KTTVYKRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRMRTVETIRKWMGRFT 555

Query: 2294 NRNVAKCAARMGQCFSSTYATVIVPAKDVNLELDDIERNGYVFSDGIGKITPKLALEVTE 2115
            ++NVAK AARMGQCFSSTYATV++   +VN  L+++ERNGY+FSDGIGKIT  LALEV +
Sbjct: 556  SKNVAKHAARMGQCFSSTYATVVMQPHEVNECLEEVERNGYIFSDGIGKITCDLALEVAQ 615

Query: 2114 KLQLGETP-SAFQIRYAGCKGVIAVWPENSDGIHLSLRPSMNKFESSHNVLEVASWTRFQ 1938
            KL+L + P SA+QIRYAG KGVIAVW   +DGI LSLRPSM+KFES+HNVLEV SWT+FQ
Sbjct: 616  KLRLTDNPPSAYQIRYAGFKGVIAVWEGENDGIRLSLRPSMHKFESNHNVLEVVSWTKFQ 675

Query: 1937 PGFLNRQIVTLLSSLGVPDNVFARMQDSMISKLNQMLIDVDVAFEVLTTSCSEQGNVAAM 1758
            PGFLNRQI+TLLSSL VPD +F++MQ++M+S LN +L D DVAF+++TTSC+EQGN AA+
Sbjct: 676  PGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDIVTTSCAEQGNTAAL 735

Query: 1757 MLSAGFKPQTEPHLKAMLSCIRSAQLGDLLEKARIFVPMGRWLMGCLDEIGVLEHGQCFI 1578
            MLSAG  P TEPHLKAML  IRS+QL  LLEK RIFVP GRWLMGCLDE+G+LE GQCFI
Sbjct: 736  MLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQCFI 795

Query: 1577 QASIPSLTNCFSKHGSRFSGLKNDRHVVVGTVVIAKNPCLHPGDIRILEAVDIPALHHLV 1398
            +AS PSL NC  KHG RFS    +   +VGT+V+AKNPCLHPGD+RILEAVD+P LHHLV
Sbjct: 796  RASSPSLNNCLVKHGPRFSSANKNAETIVGTIVMAKNPCLHPGDVRILEAVDVPELHHLV 855

Query: 1397 DCLIFPQKGDRPHANEASGSDLDGDLYFVTWDECLIPPGKRSWVPMDYTPAVAKQMPRNV 1218
            DCL+FP+KG+RPHANEASGSDLDGDLYFVTWDE LIPPGK+SW PMDY+P  AKQ+PR V
Sbjct: 856  DCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMDYSPTEAKQLPRAV 915

Query: 1217 NHRDIIDFFTKNMVNENLGVICNAHVVHADVSEYGALDEKCLQLAELAATAVDFPKTGKV 1038
            +  DI+DFF KNMVNE LG I NAHVVHAD+SEYGA+DEKC+QLAELAATAVDFPKTGK+
Sbjct: 916  SPHDIVDFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEKCIQLAELAATAVDFPKTGKI 975

Query: 1037 VTMPQSLKPKLYPDFMGKENSLSYKSEKILGKLYRKLKDAYGEDMACEPFCTYEDLPFDT 858
            V+MP SL+PKLYPDFMGKE+++SYKSEKILG+LYR +++A   D+  E  CT  DLP+D 
Sbjct: 976  VSMPPSLRPKLYPDFMGKEDAISYKSEKILGRLYRSIQEASSGDLVPEETCTLNDLPYDA 1035

Query: 857  ELDVPGASAYLSDAWFHKCSYERQLNALLGQYGISSEGEIVTGHIWSLPKYNSRRQGELK 678
            +++VPGA+ +LS AW  KCSYE QLNALL QYG+ +E E+VT HIWSLPKY+SR+QG++K
Sbjct: 1036 DMEVPGATDFLSSAWECKCSYETQLNALLNQYGVRTEAELVTEHIWSLPKYSSRKQGDIK 1095

Query: 677  ERLKNAYSALHKEFRHVFETIGADSGHLTDDEKNALYECKASAWYQVTYRPLWVKKSSEI 498
            ERLKNAYSALHK+FR +FE+   D   ++DDEK   YE KASAWYQVTY P WV+KS E+
Sbjct: 1096 ERLKNAYSALHKDFRSIFESFVTDQTEISDDEKIRFYEMKASAWYQVTYHPKWVQKSREM 1155

Query: 497  TGADGNVIPSRLSFAWISADYLVRIKLKSQERKRVDCKKPIDHLADYL 354
               D   +P+RLSFAWI  ++L RIK++     +VD ++P++ LA Y+
Sbjct: 1156 LKPDFEDMPARLSFAWIGVEHLARIKIRCHGEVKVDSRRPVERLAAYI 1203



 Score =  508 bits (1308), Expect(2) = 0.0
 Identities = 253/500 (50%), Positives = 338/500 (67%), Gaps = 9/500 (1%)
 Frame = -1

Query: 3945 GETMGSSGCEKDRHRKEMVVTQVSFGGFDESVSAKELTDYLEFEAGLIWRCRLKTSWTPP 3766
            G   G++         ++V TQVS GGFD +V A +L D+LE +AGL+WRCR+KTSWTPP
Sbjct: 2    GSLRGAAAPSPAPRAGDLVTTQVSLGGFDATVKALDLADFLELKAGLVWRCRVKTSWTPP 61

Query: 3765 DSYPDF---GITDMFGKPRKDDFMKVAPHAFVHFASPDAAKKAINAAGRCELVLNGHPLR 3595
            D+YPDF    +T    +P + D  +V PHAFVHFA P+ A+ A +AAGR EL+L+G PLR
Sbjct: 62   DAYPDFLLPTVTSAAAQPPQYD--RVPPHAFVHFARPEGARAAADAAGRSELILSGKPLR 119

Query: 3594 VNAGTESSFRVNRRRTTDPFKFSNVYVEIGTLVRKYDFWVSWKGPDSGADFVIDPFDGCC 3415
              +  ESS R +RRR+  PF+F    +E+G L  K  F  +W+GP SG +F +DPFDG C
Sbjct: 120  AASAQESSLRASRRRSVSPFRFPGSRLEVGDLPAKDAFLAAWRGPASGLEFSVDPFDGSC 179

Query: 3414 KIHFSKETPFSFKSTREMAVIKCDFKVEFLVRDIDRIEVYKDQAPFMLQLNLTSAPCVYY 3235
            ++ F+++T F  +  RE  V++CD K+EF VRD+  + V++     +++  L++AP VYY
Sbjct: 180  RLIFARDTAFKVREFRESVVMRCDVKLEFPVRDVAEVRVFRLDCSLLIR--LSAAPLVYY 237

Query: 3234 RTAEDDIHVSVPFNLLDDEDPWIRTTDFTASGAIGRCSSYRVSLSPRFGHKLEKALAYMT 3055
            RTA+DDIH SVPF+LLDD+DPWIRTTD T SGAIGRC +YR++ SPRF  K+E+ALAYM 
Sbjct: 238  RTADDDIHESVPFDLLDDDDPWIRTTDITPSGAIGRCGAYRITFSPRFWPKMERALAYMR 297

Query: 3054 EHRI------AESRPNYQIVVQDEPDFGICMPDSIFCVQNKNGISFATMYMVNAVLHKGI 2893
            + R+              + V+DEP+FG  M D  FCVQ+  G+ F  +++VNA++HKG+
Sbjct: 298  DRRVPIVDCGGGWGARRGLTVRDEPEFGERMQDLFFCVQHSEGLKFPVLFLVNALVHKGV 357

Query: 2892 VNQHQLSEEFFNLLRSQNDLVNAASLRHIWAYKRPIFDALRRLKLVQEWXXXXXXXXXXX 2713
            +NQH L+ EFF LL+ + D VN A+LR  W  K P+FDA  RLK +Q+            
Sbjct: 358  INQHHLTPEFFGLLQRKEDDVNVAALREFWGDKFPVFDACGRLKNLQD-RVARYPKLLRN 416

Query: 2712 XXSVDNIEVRRLVITPTKAYCLPPETELSNRVLRKYKDIADRFLRVTFMDEGMQRLNANV 2533
                DN EVRRLV+TPTKAYCLPPE E SNRV+R Y+++ DRFLRVTFMDEGMQ LN+NV
Sbjct: 417  KIGDDNSEVRRLVVTPTKAYCLPPEVERSNRVIRHYREVTDRFLRVTFMDEGMQLLNSNV 476

Query: 2532 LTSFTAPIVRDITLNSFPQK 2473
            L    A IV+D+  NSF  K
Sbjct: 477  LNFSAAQIVKDLMSNSFLHK 496


>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score = 1025 bits (2650), Expect(2) = 0.0
 Identities = 502/716 (70%), Positives = 580/716 (81%), Gaps = 4/716 (0%)
 Frame = -2

Query: 2477 KKTTVFNRVRNILSDGFHLCGRKYSFLAFSSNQLRDRSAWFFADQPNTTADTIRHWMGKF 2298
            +KT VF RV+ IL+DGF+LCGRKYSFLAFSSNQLRDRSAWFFA+   T+   I+ WMGKF
Sbjct: 323  QKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKF 382

Query: 2297 SNRNVAKCAARMGQCFSSTYATVIVPAKDVNLELDDIERNGYVFSDGIGKITPKLALEVT 2118
            +NRNVAKCAARMGQCFSSTYATV VP+ +V  EL DI+RNGY FSDGIGKI P LA+EV 
Sbjct: 383  TNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVA 441

Query: 2117 EKLQLGETPSAFQIRYAGCKGVIAVWPENSDGIHLSLRPSMNKFESSHNVLEVASWTRFQ 1938
            EKL+L  TPSA+QIRYAGCKGV+A WP ++DGI LS RPSMNKF S H +LE+ SWTRFQ
Sbjct: 442  EKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQ 501

Query: 1937 PGFLNRQIVTLLSSLGVPDNVFARMQDSMISKLNQMLIDVDVAFEVLTTSCSEQGNVAAM 1758
            PGFLNRQIVTLLS+L VPD +F +MQ+SMISKLNQML D DVAF+VL  SC+EQGN AA+
Sbjct: 502  PGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAI 561

Query: 1757 MLSAGFKPQTEPHLKAMLSCIRSAQLGDLLEKARIFVPMGRWLMGCLDEIGVLEHGQCFI 1578
            MLSAGFKPQTEPHL+ ML+CIR+AQ   L EKARIFVP GRWLMGCLDE+GVLE GQCFI
Sbjct: 562  MLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFI 621

Query: 1577 QASIPSLTNCFSKHGSRFSGLKNDRHVVVGTVVIAKNPCLHPGDIRILEAVDIPALHHLV 1398
            Q S PSL NCF KHGSRFS  KN + V+ G V IAKNPCLHPGD+RILEAVD P L HLV
Sbjct: 622  QVSSPSLENCFLKHGSRFSAQKNLK-VIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLV 680

Query: 1397 DCLIFPQKGDRPHANEASGSDLDGDLYFVTWDECLIPPGKRSWVPMDYTPAVAKQMPRNV 1218
            DCL+FPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPP K+SW PM Y  A AK + R V
Sbjct: 681  DCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREV 740

Query: 1217 NHRDIIDFFTKNMVNENLGVICNAHVVHADVSEYGALDEKCLQLAELAATAVDFPKTGKV 1038
               DIIDFFTKNMVNENLG ICNAHVVHAD SEYGALDE CL LAE AATAVDFPKTGK+
Sbjct: 741  TSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKL 800

Query: 1037 VTMPQSLKPKLYPDFMGKENSLSYKSEKILGKLYRKLKDAYGEDM--ACEPFCTYEDLPF 864
            VT+P  LKPK+YPDFMGKE   +Y+S KILGK+YR++KDAY ED+  + E     + +PF
Sbjct: 801  VTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPF 860

Query: 863  DTELDVPGASAYLSDAWFHKCSYERQLNALLGQYGISSEGEIVTGHIWSLPKYNSRRQGE 684
            D +L +PG++ +++DAW HKCSY+ QLN LLGQY +  E E+VTGH+WS+PKY SR+QGE
Sbjct: 861  DEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGE 920

Query: 683  LKERLKNAYSALHKEFRHVFETIGADSGHLTDDEKNALYECKASAWYQVTYRPLWVKKSS 504
            L ERLK+AYS+L KEFR +FE + +D   LTDDEKN LYE KASAWYQVTY P WVKKS 
Sbjct: 921  LTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSL 980

Query: 503  EITGADGNVIPSR--LSFAWISADYLVRIKLKSQERKRVDCKKPIDHLADYLLERL 342
            E+   D  V   R  LSFAWI+ADYL RIK++ +    VD  KPI+ LA +L++R+
Sbjct: 981  ELQNPD-EVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1035



 Score =  348 bits (894), Expect(2) = 0.0
 Identities = 173/303 (57%), Positives = 223/303 (73%), Gaps = 13/303 (4%)
 Frame = -1

Query: 3342 FKVEFLVRDIDRIEVYKDQA----PFM-------LQLNLTSAPCVYYRTAEDDIHVSVPF 3196
            + +E  +  I+R E YK +     PF        + + L+S+P VYYRTA+DDI  +VPF
Sbjct: 22   YYLEDTIGSIERTEDYKKRRRTTFPFKFPDVRLEIGILLSSSPFVYYRTADDDIEETVPF 81

Query: 3195 NLLDDEDPWIRTTDFTASGAIGRCSSYRVSLSPRFGHKLEKALAYMTEHRI--AESRPNY 3022
            +LLDD+DPWIRTTDFT SGAIGRC+SYR+S+ PR+G KL+KA+ Y+   R+   E  P +
Sbjct: 82   DLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKW 141

Query: 3021 QIVVQDEPDFGICMPDSIFCVQNKNGISFATMYMVNAVLHKGIVNQHQLSEEFFNLLRSQ 2842
            Q+ V+DEPDFG+ M D  FC+Q+K GI F  M++VNAV+HKGI+NQHQLS++FF+LLRSQ
Sbjct: 142  QLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQ 201

Query: 2841 NDLVNAASLRHIWAYKRPIFDALRRLKLVQEWXXXXXXXXXXXXXSVDNIEVRRLVITPT 2662
               +N A+L+HI +Y+ P+FDA +RLKLV +W               D +EVRRLVITP+
Sbjct: 202  QKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPS 261

Query: 2661 KAYCLPPETELSNRVLRKYKDIADRFLRVTFMDEGMQRLNANVLTSFTAPIVRDITLNSF 2482
            KAYCLPPE ELSNRVLR YK+++DRFLRVTFMDEGMQ +NANVL  + APIV+ IT NSF
Sbjct: 262  KAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSF 321

Query: 2481 PQK 2473
            PQK
Sbjct: 322  PQK 324


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1025 bits (2650), Expect(2) = 0.0
 Identities = 502/716 (70%), Positives = 580/716 (81%), Gaps = 4/716 (0%)
 Frame = -2

Query: 2477 KKTTVFNRVRNILSDGFHLCGRKYSFLAFSSNQLRDRSAWFFADQPNTTADTIRHWMGKF 2298
            +KT VF RV+ IL+DGF+LCGRKYSFLAFSSNQLRDRSAWFFA+   T+   I+ WMGKF
Sbjct: 485  QKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKF 544

Query: 2297 SNRNVAKCAARMGQCFSSTYATVIVPAKDVNLELDDIERNGYVFSDGIGKITPKLALEVT 2118
            +NRNVAKCAARMGQCFSSTYATV VP+ +V  EL DI+RNGY FSDGIGKI P LA+EV 
Sbjct: 545  TNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVA 603

Query: 2117 EKLQLGETPSAFQIRYAGCKGVIAVWPENSDGIHLSLRPSMNKFESSHNVLEVASWTRFQ 1938
            EKL+L  TPSA+QIRYAGCKGV+A WP ++DGI LS RPSMNKF S H +LE+ SWTRFQ
Sbjct: 604  EKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQ 663

Query: 1937 PGFLNRQIVTLLSSLGVPDNVFARMQDSMISKLNQMLIDVDVAFEVLTTSCSEQGNVAAM 1758
            PGFLNRQIVTLLS+L VPD +F +MQ+SMISKLNQML D DVAF+VL  SC+EQGN AA+
Sbjct: 664  PGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAI 723

Query: 1757 MLSAGFKPQTEPHLKAMLSCIRSAQLGDLLEKARIFVPMGRWLMGCLDEIGVLEHGQCFI 1578
            MLSAGFKPQTEPHL+ ML+CIR+AQ   L EKARIFVP GRWLMGCLDE+GVLE GQCFI
Sbjct: 724  MLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFI 783

Query: 1577 QASIPSLTNCFSKHGSRFSGLKNDRHVVVGTVVIAKNPCLHPGDIRILEAVDIPALHHLV 1398
            Q S PSL NCF KHGSRFS  KN + V+ G V IAKNPCLHPGD+RILEAVD P L HLV
Sbjct: 784  QVSSPSLENCFLKHGSRFSAQKNLK-VIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLV 842

Query: 1397 DCLIFPQKGDRPHANEASGSDLDGDLYFVTWDECLIPPGKRSWVPMDYTPAVAKQMPRNV 1218
            DCL+FPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPP K+SW PM Y  A AK + R V
Sbjct: 843  DCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREV 902

Query: 1217 NHRDIIDFFTKNMVNENLGVICNAHVVHADVSEYGALDEKCLQLAELAATAVDFPKTGKV 1038
               DIIDFFTKNMVNENLG ICNAHVVHAD SEYGALDE CL LAE AATAVDFPKTGK+
Sbjct: 903  TSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKL 962

Query: 1037 VTMPQSLKPKLYPDFMGKENSLSYKSEKILGKLYRKLKDAYGEDM--ACEPFCTYEDLPF 864
            VT+P  LKPK+YPDFMGKE   +Y+S KILGK+YR++KDAY ED+  + E     + +PF
Sbjct: 963  VTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPF 1022

Query: 863  DTELDVPGASAYLSDAWFHKCSYERQLNALLGQYGISSEGEIVTGHIWSLPKYNSRRQGE 684
            D +L +PG++ +++DAW HKCSY+ QLN LLGQY +  E E+VTGH+WS+PKY SR+QGE
Sbjct: 1023 DEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGE 1082

Query: 683  LKERLKNAYSALHKEFRHVFETIGADSGHLTDDEKNALYECKASAWYQVTYRPLWVKKSS 504
            L ERLK+AYS+L KEFR +FE + +D   LTDDEKN LYE KASAWYQVTY P WVKKS 
Sbjct: 1083 LTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSL 1142

Query: 503  EITGADGNVIPSR--LSFAWISADYLVRIKLKSQERKRVDCKKPIDHLADYLLERL 342
            E+   D  V   R  LSFAWI+ADYL RIK++ +    VD  KPI+ LA +L++R+
Sbjct: 1143 ELQNPD-EVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197



 Score =  586 bits (1511), Expect(2) = 0.0
 Identities = 290/491 (59%), Positives = 368/491 (74%), Gaps = 3/491 (0%)
 Frame = -1

Query: 3936 MGSSGCEKDRHRKEMVVTQVSFGGFDESVSAKELTDYLEFEAGLIWRCRLKTSWTPPDSY 3757
            M S G EKD     MVVTQ+S GGFD+ V+A ELT YLE   G + RCRLKTS TPP+SY
Sbjct: 1    MESEGSEKD-----MVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESY 55

Query: 3756 PDFGITDMFGKPRKDDFMKVAPHAFVHFASPDAAKKAINAAGRCELVLNGHPLRVNAGTE 3577
            PDF I D     R +D+ KV PHAFVHF SP+AA  A++AAG+ EL L+G PL+V+ G E
Sbjct: 56   PDFEIIDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPE 115

Query: 3576 SSFRVN-RRRTTDPFKFSNVYVEIGTLVRKYDFWVSWKGPDSGADFVIDPFDGCCKIHFS 3400
            + F +N RRRTT PFKF +V +EIG LV + +++  W+GP SG DF++DPFDG CK  F+
Sbjct: 116  TPFHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFT 175

Query: 3399 KETPFSFKSTREMAVIKCDFKVEFLVRDIDRIEVYKDQAPFMLQLNLTSAPCVYYRTAED 3220
            K+T FSFK   + AVIKC+FKVEFLVR+I+ +   +D +  +L L L+S+P VYYRTA+D
Sbjct: 176  KDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADD 235

Query: 3219 DIHVSVPFNLLDDEDPWIRTTDFTASGAIGRCSSYRVSLSPRFGHKLEKALAYMTEHR-- 3046
            DI  +VPF+LLDD+DPWIRTTDFT SGAIGRC+SYR+S+ PR+G KL+KA+ Y+   R  
Sbjct: 236  DIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVN 295

Query: 3045 IAESRPNYQIVVQDEPDFGICMPDSIFCVQNKNGISFATMYMVNAVLHKGIVNQHQLSEE 2866
            + E  P +Q+ V+DEPDFG+ M D  FC+Q+K GI F  M++VNAV+HKGI+NQHQLS++
Sbjct: 296  VLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDK 355

Query: 2865 FFNLLRSQNDLVNAASLRHIWAYKRPIFDALRRLKLVQEWXXXXXXXXXXXXXSVDNIEV 2686
            FF+LLRSQ   +N A+L+HI +Y+ P+FDA +RLKLV +W               D +EV
Sbjct: 356  FFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEV 415

Query: 2685 RRLVITPTKAYCLPPETELSNRVLRKYKDIADRFLRVTFMDEGMQRLNANVLTSFTAPIV 2506
            RRLVITP+KAYCLPPE ELSNRVLR YK+++DRFLRVTFMDEGMQ +NANVL  + APIV
Sbjct: 416  RRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIV 475

Query: 2505 RDITLNSFPQK 2473
            + IT NSFPQK
Sbjct: 476  KVITSNSFPQK 486


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1022 bits (2643), Expect(2) = 0.0
 Identities = 492/716 (68%), Positives = 581/716 (81%), Gaps = 4/716 (0%)
 Frame = -2

Query: 2477 KKTTVFNRVRNILSDGFHLCGRKYSFLAFSSNQLRDRSAWFFADQPNTTADTIRHWMGKF 2298
            +KT +F RVR+IL++GF+LCGR+YSFLAFSSNQLRDRSAWFFA+  N     I+ WMGKF
Sbjct: 483  QKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKF 542

Query: 2297 SNRNVAKCAARMGQCFSSTYATVIVPAKDVNLELDDIERNGYVFSDGIGKITPKLALEVT 2118
            +N+N+AKCAARMGQCFSSTYAT+ VP ++VN +L DI+RNGY FSDGIG ITP LA EV 
Sbjct: 543  TNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVA 602

Query: 2117 EKLQLG-ETPSAFQIRYAGCKGVIAVWPENSDGIHLSLRPSMNKFESSHNVLEVASWTRF 1941
            EKL+   + P A+QIRYAGCKGV+A WPE  DGI LSLR SMNKF+S+H +LE+ SWTRF
Sbjct: 603  EKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRF 662

Query: 1940 QPGFLNRQIVTLLSSLGVPDNVFARMQDSMISKLNQMLIDVDVAFEVLTTSCSEQGNVAA 1761
            QPGFLNRQI+TLLS+L VPD VF +MQ+ M+SKLNQML+D DVAF+VLT SC+EQGNVAA
Sbjct: 663  QPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAA 722

Query: 1760 MMLSAGFKPQTEPHLKAMLSCIRSAQLGDLLEKARIFVPMGRWLMGCLDEIGVLEHGQCF 1581
            +MLSAGFKPQ EPHL+ ML+C+R+AQL  L EKARIFVP GRWLMGCLDE+GVLE GQCF
Sbjct: 723  IMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCF 782

Query: 1580 IQASIPSLTNCFSKHGSRFSGLKNDRHVVVGTVVIAKNPCLHPGDIRILEAVDIPALHHL 1401
            IQ S   L NCF KHGS+FS  K +  VV GTVVIAKNPCLHPGDIRILEAVD P LHHL
Sbjct: 783  IQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHL 842

Query: 1400 VDCLIFPQKGDRPHANEASGSDLDGDLYFVTWDECLIPPGKRSWVPMDYTPAVAKQMPRN 1221
             DCL+FPQKG+RPHANEASGSDLDGDLYFVTWDE LIPP KRSW+PM Y  A AKQ+ R 
Sbjct: 843  YDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRP 902

Query: 1220 VNHRDIIDFFTKNMVNENLGVICNAHVVHADVSEYGALDEKCLQLAELAATAVDFPKTGK 1041
            VNH+DI++FF KNM NENLG ICNAHVV AD+SEYGALDEKCL LAELAATAVDFPKTGK
Sbjct: 903  VNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGK 962

Query: 1040 VVTMPQSLKPKLYPDFMGKENSLSYKSEKILGKLYRKLKDAYGED---MACEPFCTYEDL 870
            +V+MP  LKPK+YPDFMGKE   SYKS+KILG+LYR++KDAY +D    + E      D+
Sbjct: 963  IVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDI 1022

Query: 869  PFDTELDVPGASAYLSDAWFHKCSYERQLNALLGQYGISSEGEIVTGHIWSLPKYNSRRQ 690
            P+D +L+V GA+ ++SDAW  KCSY+ QLN LL QY +  E E+VTGH+WS+PK +SR+Q
Sbjct: 1023 PYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQ 1082

Query: 689  GELKERLKNAYSALHKEFRHVFETIGADSGHLTDDEKNALYECKASAWYQVTYRPLWVKK 510
            G+LKERLK++Y+ L +EFR VFE +  D G L DDEKN LYE KASAWYQVTY P W++K
Sbjct: 1083 GDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQK 1142

Query: 509  SSEITGADGNVIPSRLSFAWISADYLVRIKLKSQERKRVDCKKPIDHLADYLLERL 342
            S E+  +DG  I   LSFAWI+ADYL RIK++      VD  KP++ LA YL +R+
Sbjct: 1143 SLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198



 Score =  599 bits (1544), Expect(2) = 0.0
 Identities = 296/483 (61%), Positives = 362/483 (74%), Gaps = 1/483 (0%)
 Frame = -1

Query: 3918 EKDRHRKEMVVTQVSFGGFDESVSAKELTDYLEFEAGLIWRCRLKTSWTPPDSYPDFGIT 3739
            E +   KE VVTQVS GGFD  V+AK+L +YLE E GL+WRCRLKTSWTPP+SYP+F IT
Sbjct: 2    ETEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEIT 61

Query: 3738 DMFGKPRKDDFMKVAPHAFVHFASPDAAKKAINAAGRCELVLNGHPLRVNAGTESSFRVN 3559
            D+    R +D+ +V PHAFVHFA P +A  AI+AA RCEL LN   L+ + G E+ F +N
Sbjct: 62   DITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLN 121

Query: 3558 -RRRTTDPFKFSNVYVEIGTLVRKYDFWVSWKGPDSGADFVIDPFDGCCKIHFSKETPFS 3382
             RRR T PFK S V VEIGTLV + +F+V W+GP +G DF++DPFDG C+  FS+ T FS
Sbjct: 122  QRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFS 181

Query: 3381 FKSTREMAVIKCDFKVEFLVRDIDRIEVYKDQAPFMLQLNLTSAPCVYYRTAEDDIHVSV 3202
            FKST E AVIKCDFKVEFLVRDI+ I+ Y + +  +L L L SAP V+YRTA+DDI VSV
Sbjct: 182  FKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSV 241

Query: 3201 PFNLLDDEDPWIRTTDFTASGAIGRCSSYRVSLSPRFGHKLEKALAYMTEHRIAESRPNY 3022
            PF+LLDD+DPWIRTTDFTASGAIGRC SYRVS+ PR G KL KA+ ++ E R+ E     
Sbjct: 242  PFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRR 301

Query: 3021 QIVVQDEPDFGICMPDSIFCVQNKNGISFATMYMVNAVLHKGIVNQHQLSEEFFNLLRSQ 2842
             I ++DEPDFG+ M D  FC+ +K GI+F  +++VNAV+HKGI NQHQLS +FF+LLR+Q
Sbjct: 302  PIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQ 361

Query: 2841 NDLVNAASLRHIWAYKRPIFDALRRLKLVQEWXXXXXXXXXXXXXSVDNIEVRRLVITPT 2662
               VN A+L+HI+ Y+RP+FDA ++LK+ QEW               D  E+RRLVITPT
Sbjct: 362  PTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPT 421

Query: 2661 KAYCLPPETELSNRVLRKYKDIADRFLRVTFMDEGMQRLNANVLTSFTAPIVRDITLNSF 2482
            KAYCLPPE ELSNRVLRKYKD+ADRFLRVTFMDEG+Q +N+N L  F APIVR IT  SF
Sbjct: 422  KAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSF 481

Query: 2481 PQK 2473
            PQK
Sbjct: 482  PQK 484