BLASTX nr result
ID: Dioscorea21_contig00012008
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00012008
(1205 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi... 451 e-124
ref|XP_002519842.1| pentatricopeptide repeat-containing protein,... 437 e-120
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi... 434 e-119
ref|XP_003608637.1| Pentatricopeptide repeat-containing protein ... 429 e-118
ref|NP_199470.1| pentatricopeptide repeat-containing protein [Ar... 428 e-117
>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic [Vitis vinifera]
Length = 723
Score = 451 bits (1159), Expect = e-124
Identities = 225/353 (63%), Positives = 271/353 (76%), Gaps = 5/353 (1%)
Frame = +1
Query: 160 SLSDQLKPLAVTLL-KDSPKPSAIDDLHPPKPIWINPSRPKPSVLSLRRHERRPYSHNPN 336
SLS+QLKPL+ T+L +D + + + PK WINP++PKPSVLSL+RH+R YS+NP
Sbjct: 74 SLSEQLKPLSKTILTRDHSGQTHL--VSKPKSTWINPTKPKPSVLSLQRHKRHNYSYNPQ 131
Query: 337 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----VLLNSLRPWSKAHLFFLYLKA 504
+LLNSL+PW K +LFF ++K
Sbjct: 132 IRDLKLFAKKINESESSDESEFLAVLEQIPHPPTRDNALLLLNSLKPWPKTYLFFNWIKT 191
Query: 505 NSSSPLETLFYNVAMKALRAGRQFSLVEQLAHEMLDLGVELDNVTYSTIITTAKRCHEFD 684
+ P+ET+FYNV MK+LR GRQF L+E+LA+EM+ GVELDN+TYSTIIT AKRC+ FD
Sbjct: 192 QNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIITCAKRCNLFD 251
Query: 685 KAILWFERMYETGVMPDEVTYSAVLDVYAKLGKKEEVIGLYERARAAGWIPDQVAFSVLA 864
KA+ WFERMY+TG+MPDEVTYSA+LDVYAKLGK EEV+ LYER RA+GW PD +AF+VL
Sbjct: 252 KAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLG 311
Query: 865 KMFGQAGDYDGIRYVLQEMDNLGVKPNLIVYNTLLEALGNAGKPGLARSLFEDMVSAGVS 1044
KMFG+AGDYDGIRYVLQEM +LGV+PNL+VYNTLLEA+G AGKPGLARSLFE+MV +GV
Sbjct: 312 KMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVI 371
Query: 1045 PDEKTLTALIKIYGKARWSRDALQLWERMRSNKWPMDFILYNTLLSMCADVGL 1203
PD KTLTAL+KIYGKARW+RDAL+LWERMRSN WPMDFILYNTLLSMCAD+GL
Sbjct: 372 PDAKTLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGL 424
Score = 78.2 bits (191), Expect = 4e-12
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 1/182 (0%)
Frame = +1
Query: 583 VEQLAHEMLDLGVELDNVTYSTIITTAKRCHEFDKAILWFERMYETGVMPDEVTYSAVLD 762
+ + EM LGV+ + V Y+T++ + + A FE M +GV+PD T +A++
Sbjct: 323 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVK 382
Query: 763 VYAKLGKKEEVIGLYERARAAGWIPDQVAFSVLAKMFGQAGDYDGIRYVLQEMDNLG-VK 939
+Y K + + L+ER R+ GW D + ++ L M G + + ++M +
Sbjct: 383 IYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCR 442
Query: 940 PNLIVYNTLLEALGNAGKPGLARSLFEDMVSAGVSPDEKTLTALIKIYGKARWSRDALQL 1119
P+ Y +L G+ G A LF++M GV + T L + G+AR D +++
Sbjct: 443 PDSWSYTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKV 502
Query: 1120 WE 1125
+E
Sbjct: 503 FE 504
Score = 74.7 bits (182), Expect = 4e-11
Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 1/193 (0%)
Frame = +1
Query: 535 YNVAMKALRAGRQFSLVEQLAHEMLDLGVELDNVTYSTIITTAKRCHEFDKAILWFERMY 714
YN ++A+ + L L EM+ GV D T + ++ + A+ +ERM
Sbjct: 342 YNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVKIYGKARWARDALELWERMR 401
Query: 715 ETGVMPDEVTYSAVLDVYAKLGKKEEVIGLYERARAAGWI-PDQVAFSVLAKMFGQAGDY 891
G D + Y+ +L + A LG +EE L+E + + PD +++ + ++G G+
Sbjct: 402 SNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCRPDSWSYTAMLNIYGSGGNV 461
Query: 892 DGIRYVLQEMDNLGVKPNLIVYNTLLEALGNAGKPGLARSLFEDMVSAGVSPDEKTLTAL 1071
D + EM LGV+ N++ L + LG A + +FE + GV PD++ L
Sbjct: 462 DRAMQLFDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKVFEVSLERGVKPDDRLCGCL 521
Query: 1072 IKIYGKARWSRDA 1110
+ + + DA
Sbjct: 522 LSVVSFCEGAEDA 534
>ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540888|gb|EEF42446.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 677
Score = 437 bits (1124), Expect = e-120
Identities = 221/377 (58%), Positives = 272/377 (72%), Gaps = 8/377 (2%)
Frame = +1
Query: 97 RATIVCNS---SRAXXXXXXXXXXSLSDQLKPLAVTLLKDSPKPSAIDD--LHPPKPIWI 261
R TI CNS S+ SLSDQLKPL+ T L + + L P W+
Sbjct: 46 RLTISCNSRKTSKHLSESPNPKNPSLSDQLKPLSSTTLSTTTTTTTTKHSLLSKPNSTWV 105
Query: 262 NPSRPKPSVLSLRRHERRPYSHNPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 441
NP++PK SVLSL+R +R PYS NP
Sbjct: 106 NPTKPKRSVLSLQRQKRSPYSLNPKVKELRLFAQKLNDCDSTESSFLSLLEQIPYPLTRE 165
Query: 442 ---VLLNSLRPWSKAHLFFLYLKANSSSPLETLFYNVAMKALRAGRQFSLVEQLAHEMLD 612
++LNSLRPW KAHLFF ++K +S P+ET+FYNV MK+LR GRQF L+++LA+EM+
Sbjct: 166 NALLILNSLRPWQKAHLFFNWIKTQNSFPVETIFYNVTMKSLRFGRQFELIDKLANEMVS 225
Query: 613 LGVELDNVTYSTIITTAKRCHEFDKAILWFERMYETGVMPDEVTYSAVLDVYAKLGKKEE 792
+ELDN+TYSTIIT AKRC+ FD A+ WFERMY+TG+MPDEVTYSA+LDVYAKLG+ EE
Sbjct: 226 NEIELDNITYSTIITCAKRCNRFDMALEWFERMYKTGLMPDEVTYSAILDVYAKLGRVEE 285
Query: 793 VIGLYERARAAGWIPDQVAFSVLAKMFGQAGDYDGIRYVLQEMDNLGVKPNLIVYNTLLE 972
V+ LYER A+GW PD + FSVLAKMFG+AGDYDGIRYVLQEM +L V+PN++VYNTLLE
Sbjct: 286 VLSLYERGVASGWKPDPITFSVLAKMFGEAGDYDGIRYVLQEMKSLAVQPNVVVYNTLLE 345
Query: 973 ALGNAGKPGLARSLFEDMVSAGVSPDEKTLTALIKIYGKARWSRDALQLWERMRSNKWPM 1152
A+G AGKPGLARSLF++MV +G++P+EKTLTAL KIYGKARW++DA++LWERMRSN WPM
Sbjct: 346 AMGKAGKPGLARSLFDEMVESGLTPNEKTLTALAKIYGKARWAKDAMELWERMRSNDWPM 405
Query: 1153 DFILYNTLLSMCADVGL 1203
DFILYNTLLSMCAD+G+
Sbjct: 406 DFILYNTLLSMCADLGM 422
>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Cucumis sativus]
gi|449521148|ref|XP_004167592.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Cucumis sativus]
Length = 710
Score = 434 bits (1117), Expect = e-119
Identities = 217/382 (56%), Positives = 272/382 (71%), Gaps = 11/382 (2%)
Frame = +1
Query: 91 SSRATIVCNSSRAXXXXXXXXXXS-------LSDQLKPLAVTLLKDSPKPSAIDDLHPPK 249
+ R T++C+SS++ S LS+QLK L+ T L ++P L PK
Sbjct: 30 TKRLTLLCSSSKSPRKPSSVSSQSVDNKNPSLSEQLKNLSTTTLSNAPNDET-RLLSKPK 88
Query: 250 PIWINPSRPKPSVLSLRRHERRPYSHNPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 429
W+NP++PK SVLSL+R +R YS+NP
Sbjct: 89 STWVNPTKPKRSVLSLQRQKRSSYSYNPKMRDLKSFAHKLNACDSSDDASFIAALEEIPH 148
Query: 430 XXXX----VLLNSLRPWSKAHLFFLYLKANSSSPLETLFYNVAMKALRAGRQFSLVEQLA 597
++LNSLRPW K HLFF ++K+ + P+ET+FYNVAMK+LR GRQF L+E LA
Sbjct: 149 PPTKENALLILNSLRPWQKTHLFFNWIKSQNLFPMETIFYNVAMKSLRYGRQFQLIEDLA 208
Query: 598 HEMLDLGVELDNVTYSTIITTAKRCHEFDKAILWFERMYETGVMPDEVTYSAVLDVYAKL 777
+EM+ G+ELDN+TYSTIIT AK+C FDKA+ WFERMY+TG+MPDEVTYSA+LDVYA L
Sbjct: 209 NEMISAGIELDNITYSTIITCAKKCSRFDKAMEWFERMYKTGLMPDEVTYSAILDVYANL 268
Query: 778 GKKEEVIGLYERARAAGWIPDQVAFSVLAKMFGQAGDYDGIRYVLQEMDNLGVKPNLIVY 957
GK EEV+ LYER RA+GW PD FSVL KMFG+AGDYDGI YVLQEM ++ ++PNL+VY
Sbjct: 269 GKVEEVLSLYERGRASGWTPDPYTFSVLGKMFGEAGDYDGIMYVLQEMKSIEMQPNLVVY 328
Query: 958 NTLLEALGNAGKPGLARSLFEDMVSAGVSPDEKTLTALIKIYGKARWSRDALQLWERMRS 1137
NTLL+A+G AGKPG ARSLF++MV +G++P+EKTLTAL+KIYGKARW+RDAL LWERMRS
Sbjct: 329 NTLLDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKARWARDALDLWERMRS 388
Query: 1138 NKWPMDFILYNTLLSMCADVGL 1203
N WPMDFILYNTLL+MCAD+GL
Sbjct: 389 NGWPMDFILYNTLLNMCADLGL 410
Score = 69.7 bits (169), Expect = 1e-09
Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 1/192 (0%)
Frame = +1
Query: 535 YNVAMKALRAGRQFSLVEQLAHEMLDLGVELDNVTYSTIITTAKRCHEFDKAILWFERMY 714
YN + A+ + L EM++ G+ + T + ++ + A+ +ERM
Sbjct: 328 YNTLLDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKARWARDALDLWERMR 387
Query: 715 ETGVMPDEVTYSAVLDVYAKLGKKEEVIGLYERARAAGWI-PDQVAFSVLAKMFGQAGDY 891
G D + Y+ +L++ A LG +EE L+E + + PD +++ + ++G G+
Sbjct: 388 SNGWPMDFILYNTLLNMCADLGLEEEAETLFEEMKKSKHSRPDSWSYTAMLNIYGSGGNV 447
Query: 892 DGIRYVLQEMDNLGVKPNLIVYNTLLEALGNAGKPGLARSLFEDMVSAGVSPDEKTLTAL 1071
+ +EM LGV+ N++ L++ LG +G+ +F V G+ PD++ L
Sbjct: 448 KRSMELFEEMLELGVEINVMCCTCLIQCLGKSGRIDDLVRVFNVSVQKGIKPDDRLCGCL 507
Query: 1072 IKIYGKARWSRD 1107
+ + S D
Sbjct: 508 LSVLSLCYNSED 519
>ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509692|gb|AES90834.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 715
Score = 429 bits (1104), Expect = e-118
Identities = 210/353 (59%), Positives = 261/353 (73%), Gaps = 5/353 (1%)
Frame = +1
Query: 160 SLSDQLKPLAVTLLKDSPKPSAIDDLHPPKPIWINPSRPKPSVLSLRRHERRPYSHNPNX 339
SLSDQL LA T L P+ L PKP W+NP++ K VLS +RH+R S+NP
Sbjct: 64 SLSDQLASLANTTLSTVPENQP-KVLSKPKPTWVNPTKTKRPVLSHQRHKRSSVSYNPQL 122
Query: 340 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----VLLNSLRPWSKAHLFFLYLKA 504
++LNSLRPW K H+FF ++K
Sbjct: 123 REFQRFAQRLNNCDVSSSDEEFMVCLEEIPSSLTRGNALLVLNSLRPWQKTHMFFNWIKT 182
Query: 505 NSSSPLETLFYNVAMKALRAGRQFSLVEQLAHEMLDLGVELDNVTYSTIITTAKRCHEFD 684
+ P+ET+FYNV MK+LR GRQF ++E+LAH+M+D GVELDN+TYSTII+ AK+C+ FD
Sbjct: 183 QNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFD 242
Query: 685 KAILWFERMYETGVMPDEVTYSAVLDVYAKLGKKEEVIGLYERARAAGWIPDQVAFSVLA 864
KA+ WFERMY+TG+MPDEVT+SA+LDVYA+LGK EEV+ L+ER RA GW PD + FSVL
Sbjct: 243 KAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLG 302
Query: 865 KMFGQAGDYDGIRYVLQEMDNLGVKPNLIVYNTLLEALGNAGKPGLARSLFEDMVSAGVS 1044
KMFG+AGDYDGIRYVLQEM +LGV+PNL+VYNTLLEA+G AGKPG ARSLFE+M+ +G++
Sbjct: 303 KMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIA 362
Query: 1045 PDEKTLTALIKIYGKARWSRDALQLWERMRSNKWPMDFILYNTLLSMCADVGL 1203
P+EKTLTA+IKIYGKARWS+DAL+LW+RM+ N WPMDFILYNTLL+MCADVGL
Sbjct: 363 PNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGL 415
Score = 80.1 bits (196), Expect = 1e-12
Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 1/202 (0%)
Frame = +1
Query: 523 ETLFYNVAMKALRAGRQFSLVEQLAHEMLDLGVELDNVTYSTIITTAKRCHEFDKAILWF 702
+ + ++V K + + + EM LGV+ + V Y+T++ + + A F
Sbjct: 294 DPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLF 353
Query: 703 ERMYETGVMPDEVTYSAVLDVYAKLGKKEEVIGLYERARAAGWIPDQVAFSVLAKMFGQA 882
E M ++G+ P+E T +AV+ +Y K ++ + L++R + GW D + ++ L M
Sbjct: 354 EEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADV 413
Query: 883 GDYDGIRYVLQEM-DNLGVKPNLIVYNTLLEALGNAGKPGLARSLFEDMVSAGVSPDEKT 1059
G + + ++M + KP+ Y +L G+ G A LFE+M G+ +
Sbjct: 414 GLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMG 473
Query: 1060 LTALIKIYGKARWSRDALQLWE 1125
T LI+ GKA D +++++
Sbjct: 474 CTCLIQCLGKAMEIDDLVKVFD 495
>ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g46580, chloroplastic; Flags: Precursor
gi|8885599|dbj|BAA97529.1| unnamed protein product
[Arabidopsis thaliana] gi|332008017|gb|AED95400.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 711
Score = 428 bits (1100), Expect = e-117
Identities = 213/352 (60%), Positives = 261/352 (74%), Gaps = 4/352 (1%)
Frame = +1
Query: 160 SLSDQLKPLAVTLLKDSPKPSAIDDLHPPKPIWINPSRPKPSVLSLRRHERRPYSHNPNX 339
SLS+QLKPL+ T L+ L PK +W+NP+RPK SVLSL+R +R YS+NP
Sbjct: 64 SLSEQLKPLSATTLRQEQTQI----LSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQI 119
Query: 340 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----VLLNSLRPWSKAHLFFLYLKAN 507
++LNSLR W K H FF ++K+
Sbjct: 120 KDLRAFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSK 179
Query: 508 SSSPLETLFYNVAMKALRAGRQFSLVEQLAHEMLDLGVELDNVTYSTIITTAKRCHEFDK 687
S P+ET+FYNV MK+LR GRQF L+E++A EM+ GVELDN+TYSTIIT AKRC+ ++K
Sbjct: 180 SLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNK 239
Query: 688 AILWFERMYETGVMPDEVTYSAVLDVYAKLGKKEEVIGLYERARAAGWIPDQVAFSVLAK 867
AI WFERMY+TG+MPDEVTYSA+LDVY+K GK EEV+ LYERA A GW PD +AFSVL K
Sbjct: 240 AIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGK 299
Query: 868 MFGQAGDYDGIRYVLQEMDNLGVKPNLIVYNTLLEALGNAGKPGLARSLFEDMVSAGVSP 1047
MFG+AGDYDGIRYVLQEM ++ VKPN++VYNTLLEA+G AGKPGLARSLF +M+ AG++P
Sbjct: 300 MFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTP 359
Query: 1048 DEKTLTALIKIYGKARWSRDALQLWERMRSNKWPMDFILYNTLLSMCADVGL 1203
+EKTLTAL+KIYGKARW+RDALQLWE M++ KWPMDFILYNTLL+MCAD+GL
Sbjct: 360 NEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGL 411
Score = 82.0 bits (201), Expect = 3e-13
Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 1/224 (0%)
Frame = +1
Query: 523 ETLFYNVAMKALRAGRQFSLVEQLAHEMLDLGVELDNVTYSTIITTAKRCHEFDKAILWF 702
+ + ++V K + + + EM + V+ + V Y+T++ R + A F
Sbjct: 290 DAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLF 349
Query: 703 ERMYETGVMPDEVTYSAVLDVYAKLGKKEEVIGLYERARAAGWIPDQVAFSVLAKMFGQA 882
M E G+ P+E T +A++ +Y K + + L+E +A W D + ++ L M
Sbjct: 350 NEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADI 409
Query: 883 GDYDGIRYVLQEM-DNLGVKPNLIVYNTLLEALGNAGKPGLARSLFEDMVSAGVSPDEKT 1059
G + + +M +++ +P+ Y +L G+ GK A LFE+M+ AGV +
Sbjct: 410 GLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMG 469
Query: 1060 LTALIKIYGKARWSRDALQLWERMRSNKWPMDFILYNTLLSMCA 1191
T L++ GKA+ D + +++ D L LLS+ A
Sbjct: 470 CTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMA 513