BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00010741
         (1503 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512787.1| pentatricopeptide repeat-containing protein,...   368   3e-99
ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226...   331   3e-88
ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212...   331   3e-88
ref|XP_002876985.1| pentatricopeptide repeat-containing protein ...   321   3e-85
ref|NP_189297.1| pentatricopeptide repeat-containing protein [Ar...   318   2e-84

>ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223547798|gb|EEF49290.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 480

 Score =  368 bits (944), Expect = 3e-99
 Identities = 203/423 (47%), Positives = 261/423 (61%)
 Frame = -1

Query: 1500 LLRLYSSHRRLDLASAVFSPAVATANTLHWNLMIRANVSNGSPVEALRLYNLLIAQGSPS 1321
            LLRL  S++++D A+ +F   +   +T  WN MIRA   NG+  +AL LYNL+I +G  S
Sbjct: 70   LLRLCFSYQKVDYATLIFDQ-IQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGF-S 127

Query: 1320 PDKFTFPFAITACSALSHLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCGSPDYARRV 1141
            PDKFTFPF I AC   S L KG E+H  AIK GF  DT++ N L+ LYF CG  DYAR++
Sbjct: 128  PDKFTFPFVIKACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKL 187

Query: 1140 FDRMTMRTVGSWTXXXXXXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAKNGRPDEAF 961
            FD+M +R+V SWT              A+ AFDE P +NVV+WTAMI+G+ KN RP EAF
Sbjct: 188  FDKMAVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAF 247

Query: 960  ELFHSMQAHNVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELSTNVYVGTALIDM 781
            ELF  MQ  NVRPN FT+V LL AC ELGSL LGRR+H+YA  N      V++GTALIDM
Sbjct: 248  ELFQRMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENG-FKVGVFLGTALIDM 306

Query: 780  YSKCGSLIDAVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREMERSGLKPDRITL 601
            YSKCGS+ DA KVF+EM  +SLATWNSMITS+GVHG G EA+ALF +ME + ++PD IT 
Sbjct: 307  YSKCGSIEDAKKVFEEMQKKSLATWNSMITSLGVHGFGKEALALFAQMEEANVRPDAITF 366

Query: 600  FGVVCACSRAGMVEEACELFKYLVRCYRIEPELEHYKCMAELLGSAIVNGKEDEIVDLVR 421
             GV+ AC     VE     FKY+   Y I P LEHY CM EL   A +    +E+ +LV 
Sbjct: 367  VGVLFACVNTNNVEAGYRYFKYMTEHYGITPMLEHYTCMIELYTRAAM---LNEVSELVN 423

Query: 420  KLIGVMDDAGVLLMLEACRYHGDVKLEGVVSSCIHEVEISRVGGSSEAQLKQQQKLCFSW 241
             +   ++      ++       + + E       H  ++  +G    +   Q Q  CF W
Sbjct: 424  SMPMKLNSNPAAALVWPSIIDSNAENENFFE---HHEDLHCIGTPFSS---QNQFWCFKW 477

Query: 240  EVG 232
            +VG
Sbjct: 478  DVG 480


>ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  331 bits (849), Expect = 3e-88
 Identities = 172/342 (50%), Positives = 221/342 (64%)
 Frame = -1

Query: 1500 LLRLYSSHRRLDLASAVFSPAVATANTLHWNLMIRANVSNGSPVEALRLYNLLIAQGSPS 1321
            L+ LYS+H R+  A  +F   +    T  WNL+IRAN  NG   +AL LY  ++ QG  +
Sbjct: 65   LIHLYSTHGRIAYAILLFYQ-IQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAA 123

Query: 1320 PDKFTFPFAITACSALSHLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCGSPDYARRV 1141
             DKFTFPF I AC+    +  G  +H   IK GFS D +VQN LI  YF CG   +A +V
Sbjct: 124  -DKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKV 182

Query: 1140 FDRMTMRTVGSWTXXXXXXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAKNGRPDEAF 961
            F++M +R V SWT              A++ FDE P KNVV+WTAMI+G+ +N +P+EA 
Sbjct: 183  FEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEAL 242

Query: 960  ELFHSMQAHNVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELSTNVYVGTALIDM 781
            ELF  MQA N+ PN +T+V+L+ AC E+G L LGR +HDYA  N  +   VY+GTALIDM
Sbjct: 243  ELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC-IEIGVYLGTALIDM 301

Query: 780  YSKCGSLIDAVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREMERSGLKPDRITL 601
            YSKCGS+ DA++VF+ MP +SL TWNSMITS+GVHG G EA+ LF EMER  +KPD IT 
Sbjct: 302  YSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITF 361

Query: 600  FGVVCACSRAGMVEEACELFKYLVRCYRIEPELEHYKCMAEL 475
             GV+CAC     V+E C  F  + + Y I P  EHY+CM EL
Sbjct: 362  IGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL 403



 Score =  207 bits (527), Expect = 6e-51
 Identities = 134/412 (32%), Positives = 203/412 (49%), Gaps = 8/412 (1%)
 Frame = -1

Query: 1503 ALLRLYSSHRRLDLASAVFSPAVATANTLHWNLMIRANVSNGSPVEALRLYNLLIAQGSP 1324
            AL+ +YS   +L  A A+F   +   N + W  MI   V N     AL L+   + + + 
Sbjct: 1182 ALIDMYSKCGQLKDARALFDE-IPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETE 1240

Query: 1323 SPDKFTFPF-------AITACSALSHLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCG 1165
              D    P         ++ACS +S       +H   +K GF     V N L+  Y  CG
Sbjct: 1241 VEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCG 1300

Query: 1164 SPDYARRVFDRMTMRTVGSWTXXXXXXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAK 985
             P  +++VFD M                                +K+ ++W +MI  +A+
Sbjct: 1301 QPLVSKKVFDWME-------------------------------EKDDISWNSMIAVYAQ 1329

Query: 984  NGRPDEAFELFHSMQAH-NVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELSTNV 808
            +G   EA E+FH M  H  VR NA T+ A+L+AC   G+L  G+ +HD      +L  NV
Sbjct: 1330 SGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV-IKMDLEYNV 1388

Query: 807  YVGTALIDMYSKCGSLIDAVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREMERS 628
             VGT++IDMY KCG +  A K FD M  +++ +W +M+   G+HGR  EA+ +F +M R+
Sbjct: 1389 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRA 1448

Query: 627  GLKPDRITLFGVVCACSRAGMVEEACELFKYLVRCYRIEPELEHYKCMAELLGSAIVNGK 448
            G+KP+ IT   V+ ACS AG+VEE    F  +   Y IEP +EHY CM +L G A   G 
Sbjct: 1449 GVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRA---GC 1505

Query: 447  EDEIVDLVRKLIGVMDDAGVLLMLEACRYHGDVKLEGVVSSCIHEVEISRVG 292
             +E  +L++++    D      +L ACR H +V L  + +  + E++    G
Sbjct: 1506 LNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCG 1557



 Score =  134 bits (338), Expect = 5e-29
 Identities = 102/324 (31%), Positives = 149/324 (45%), Gaps = 13/324 (4%)
 Frame = -1

Query: 1500 LLRLYSSHRR-LDLASAV---FSPAVATANTLHWNLMIRANVSNGSPVEALRLYNLLIAQ 1333
            LL   SS RR + L+S +   F   V  +N   WN +I      G  VEALR ++ L   
Sbjct: 1077 LLGFPSSRRRPVSLSSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKL 1136

Query: 1332 GSPSPDKFTFPFAITACSALSHLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCGSPDY 1153
            G   P + +FP  I +CSAL  L  G   H  A   GF  D +V +ALI +Y  CG    
Sbjct: 1137 GL-IPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKD 1195

Query: 1152 ARRVFDRMTMRTVGSWTXXXXXXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAKNGRP 973
            AR +FD + +R                               NVV+WT+MI G+ +N + 
Sbjct: 1196 ARALFDEIPLR-------------------------------NVVSWTSMITGYVQNEQA 1224

Query: 972  DEAFELFHSM--------QAHNVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELS 817
            D A  LF             +NV  ++  +V++L AC+ +    +   VH +        
Sbjct: 1225 DNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKG-FD 1283

Query: 816  TNVYVGTALIDMYSKCGSLIDAVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREM 637
             ++ VG  L+D Y+KCG  + + KVFD M  +   +WNSMI      G   EA+ +F  M
Sbjct: 1284 GSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGM 1343

Query: 636  ERS-GLKPDRITLFGVVCACSRAG 568
             R  G++ + +TL  V+ AC+ AG
Sbjct: 1344 VRHVGVRYNAVTLSAVLLACAHAG 1367



 Score = 85.1 bits (209), Expect = 4e-14
 Identities = 68/254 (26%), Positives = 111/254 (43%)
 Frame = -1

Query: 1299 FAITACSALSHLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCGSPDYARRVFDRMTMR 1120
            F +  C    HL    ++H+  I++G S+D  +   LIHLY T G   YA  +F ++   
Sbjct: 32   FLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQI--- 85

Query: 1119 TVGSWTXXXXXXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAKNGRPDEAFELFHSMQ 940
                                         +    TW  +I     NG  ++A  L+ +M 
Sbjct: 86   ----------------------------QNPCTFTWNLIIRANTINGLSEQALMLYKNMV 117

Query: 939  AHNVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELSTNVYVGTALIDMYSKCGSL 760
               +  + FT   ++ AC    S+ LG+ VH  +      S +V+V   LID Y KCG  
Sbjct: 118  CQGIAADKFTFPFVIKACTNFLSIDLGKVVHG-SLIKYGFSGDVFVQNNLIDFYFKCGHT 176

Query: 759  IDAVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREMERSGLKPDRITLFGVVCAC 580
              A+KVF++M VR++ +W ++I+ +   G   EA  +F E+    +    ++   ++   
Sbjct: 177  RFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV----VSWTAMINGY 232

Query: 579  SRAGMVEEACELFK 538
             R    EEA ELFK
Sbjct: 233  IRNQQPEEALELFK 246


>ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  331 bits (849), Expect = 3e-88
 Identities = 172/342 (50%), Positives = 221/342 (64%)
 Frame = -1

Query: 1500 LLRLYSSHRRLDLASAVFSPAVATANTLHWNLMIRANVSNGSPVEALRLYNLLIAQGSPS 1321
            L+ LYS+H R+  A  +F   +    T  WNL+IRAN  NG   +AL LY  ++ QG  +
Sbjct: 65   LIHLYSTHGRIAYAILLFYQ-IQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAA 123

Query: 1320 PDKFTFPFAITACSALSHLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCGSPDYARRV 1141
             DKFTFPF I AC+    +  G  +H   IK GFS D +VQN LI  YF CG   +A +V
Sbjct: 124  -DKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKV 182

Query: 1140 FDRMTMRTVGSWTXXXXXXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAKNGRPDEAF 961
            F++M +R V SWT              A++ FDE P KNVV+WTAMI+G+ +N +P+EA 
Sbjct: 183  FEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEAL 242

Query: 960  ELFHSMQAHNVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELSTNVYVGTALIDM 781
            ELF  MQA N+ PN +T+V+L+ AC E+G L LGR +HDYA  N  +   VY+GTALIDM
Sbjct: 243  ELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC-IEIGVYLGTALIDM 301

Query: 780  YSKCGSLIDAVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREMERSGLKPDRITL 601
            YSKCGS+ DA++VF+ MP +SL TWNSMITS+GVHG G EA+ LF EMER  +KPD IT 
Sbjct: 302  YSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITF 361

Query: 600  FGVVCACSRAGMVEEACELFKYLVRCYRIEPELEHYKCMAEL 475
             GV+CAC     V+E C  F  + + Y I P  EHY+CM EL
Sbjct: 362  IGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL 403



 Score =  207 bits (527), Expect = 6e-51
 Identities = 134/412 (32%), Positives = 203/412 (49%), Gaps = 8/412 (1%)
 Frame = -1

Query: 1503 ALLRLYSSHRRLDLASAVFSPAVATANTLHWNLMIRANVSNGSPVEALRLYNLLIAQGSP 1324
            AL+ +YS   +L  A A+F   +   N + W  MI   V N     AL L+   + + + 
Sbjct: 2055 ALIDMYSKCGQLKDARALFDE-IPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETE 2113

Query: 1323 SPDKFTFPF-------AITACSALSHLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCG 1165
              D    P         ++ACS +S       +H   +K GF     V N L+  Y  CG
Sbjct: 2114 VEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCG 2173

Query: 1164 SPDYARRVFDRMTMRTVGSWTXXXXXXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAK 985
             P  +++VFD M                                +K+ ++W +MI  +A+
Sbjct: 2174 QPLVSKKVFDWME-------------------------------EKDDISWNSMIAVYAQ 2202

Query: 984  NGRPDEAFELFHSMQAH-NVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELSTNV 808
            +G   EA E+FH M  H  VR NA T+ A+L+AC   G+L  G+ +HD      +L  NV
Sbjct: 2203 SGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV-IKMDLEYNV 2261

Query: 807  YVGTALIDMYSKCGSLIDAVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREMERS 628
             VGT++IDMY KCG +  A K FD M  +++ +W +M+   G+HGR  EA+ +F +M R+
Sbjct: 2262 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRA 2321

Query: 627  GLKPDRITLFGVVCACSRAGMVEEACELFKYLVRCYRIEPELEHYKCMAELLGSAIVNGK 448
            G+KP+ IT   V+ ACS AG+VEE    F  +   Y IEP +EHY CM +L G A   G 
Sbjct: 2322 GVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRA---GC 2378

Query: 447  EDEIVDLVRKLIGVMDDAGVLLMLEACRYHGDVKLEGVVSSCIHEVEISRVG 292
             +E  +L++++    D      +L ACR H +V L  + +  + E++    G
Sbjct: 2379 LNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCG 2430



 Score =  133 bits (334), Expect = 1e-28
 Identities = 94/303 (31%), Positives = 138/303 (45%), Gaps = 9/303 (2%)
 Frame = -1

Query: 1449 FSPAVATANTLHWNLMIRANVSNGSPVEALRLYNLLIAQGSPSPDKFTFPFAITACSALS 1270
            F   V  +N   WN +I      G  VEALR ++ L   G   P + +FP  I +CSAL 
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGL-IPTRSSFPCTIKSCSALC 2029

Query: 1269 HLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCGSPDYARRVFDRMTMRTVGSWTXXXX 1090
             L  G   H  A   GF  D +V +ALI +Y  CG    AR +FD + +R          
Sbjct: 2030 DLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR---------- 2079

Query: 1089 XXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAKNGRPDEAFELFHSM--------QAH 934
                                 NVV+WT+MI G+ +N + D A  LF             +
Sbjct: 2080 ---------------------NVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGN 2118

Query: 933  NVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELSTNVYVGTALIDMYSKCGSLID 754
            NV  ++  +V++L AC+ +    +   VH +         ++ VG  L+D Y+KCG  + 
Sbjct: 2119 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKG-FDGSIGVGNTLMDAYAKCGQPLV 2177

Query: 753  AVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREMERS-GLKPDRITLFGVVCACS 577
            + KVFD M  +   +WNSMI      G   EA+ +F  M R  G++ + +TL  V+ AC+
Sbjct: 2178 SKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACA 2237

Query: 576  RAG 568
             AG
Sbjct: 2238 HAG 2240



 Score = 85.1 bits (209), Expect = 4e-14
 Identities = 68/254 (26%), Positives = 111/254 (43%)
 Frame = -1

Query: 1299 FAITACSALSHLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCGSPDYARRVFDRMTMR 1120
            F +  C    HL    ++H+  I++G S+D  +   LIHLY T G   YA  +F ++   
Sbjct: 32   FLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQI--- 85

Query: 1119 TVGSWTXXXXXXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAKNGRPDEAFELFHSMQ 940
                                         +    TW  +I     NG  ++A  L+ +M 
Sbjct: 86   ----------------------------QNPCTFTWNLIIRANTINGLSEQALMLYKNMV 117

Query: 939  AHNVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELSTNVYVGTALIDMYSKCGSL 760
               +  + FT   ++ AC    S+ LG+ VH  +      S +V+V   LID Y KCG  
Sbjct: 118  CQGIAADKFTFPFVIKACTNFLSIDLGKVVHG-SLIKYGFSGDVFVQNNLIDFYFKCGHT 176

Query: 759  IDAVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREMERSGLKPDRITLFGVVCAC 580
              A+KVF++M VR++ +W ++I+ +   G   EA  +F E+    +    ++   ++   
Sbjct: 177  RFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV----VSWTAMINGY 232

Query: 579  SRAGMVEEACELFK 538
             R    EEA ELFK
Sbjct: 233  IRNQQPEEALELFK 246


>ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297322823|gb|EFH53244.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 451

 Score =  321 bits (823), Expect = 3e-85
 Identities = 176/358 (49%), Positives = 227/358 (63%), Gaps = 1/358 (0%)
 Frame = -1

Query: 1500 LLRLYSSHRRLDLASAVFSPAVATANTLHWNLMIRANVSNGSPVEALRLYNLLIAQGSPS 1321
            L+ + SS      AS VF+  + + +T  WNLMIR+   N  P EAL L+ L+++   P 
Sbjct: 58   LISVSSSFGETQYASLVFNQ-LQSPSTFTWNLMIRSLSLNHKPREALLLFILMLSH-QPQ 115

Query: 1320 PDKFTFPFAITACSALSHLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCGSPDYARRV 1141
             DKFTFPF I AC A S L  G ++H LAIKAGF +D + QN L+ LYF CG PD  R+V
Sbjct: 116  FDKFTFPFVIKACLASSSLRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDCGRKV 175

Query: 1140 FDRMTMRTVGSWTXXXXXXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAKNGRPDEAF 961
            FD+M  R++ SWT              A+  F++ P +NVV+WTAMI  + KN RPDEAF
Sbjct: 176  FDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPTRNVVSWTAMITAYVKNRRPDEAF 235

Query: 960  ELFHSMQAHNVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELSTNVYVGTALIDM 781
            +LF  MQ  +V+PN FT+V LL A  +LGSL +GR VHDYA  N     + Y+GTALIDM
Sbjct: 236  QLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNG-FVLDCYLGTALIDM 294

Query: 780  YSKCGSLIDAVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREM-ERSGLKPDRIT 604
            YSKCGSL DA KVFD M  +SLATWNSMITS+GVHG G EA+ LF EM E + ++PD IT
Sbjct: 295  YSKCGSLQDARKVFDVMQSKSLATWNSMITSLGVHGCGEEALYLFEEMEEEASVEPDAIT 354

Query: 603  LFGVVCACSRAGMVEEACELFKYLVRCYRIEPELEHYKCMAELLGSAIVNGKEDEIVD 430
              GV+ AC+  G V++    F  +++ Y I P  EH  CM +LL  A+   K  + +D
Sbjct: 355  FVGVLSACANTGNVKDGLRYFTRMIQVYGISPIREHNACMIQLLEQALEMEKASDSMD 412


>ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75275188|sp|Q38959.1|PP257_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g26630, chloroplastic; Flags: Precursor
            gi|1402883|emb|CAA66814.1| hypothetical protein
            [Arabidopsis thaliana] gi|1495263|emb|CAA66119.1| orf09
            [Arabidopsis thaliana] gi|11994298|dbj|BAB01728.1|
            unnamed protein product [Arabidopsis thaliana]
            gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis
            thaliana] gi|23198064|gb|AAN15559.1| unknown protein
            [Arabidopsis thaliana] gi|332643668|gb|AEE77189.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 455

 Score =  318 bits (816), Expect = 2e-84
 Identities = 173/358 (48%), Positives = 226/358 (63%), Gaps = 1/358 (0%)
 Frame = -1

Query: 1500 LLRLYSSHRRLDLASAVFSPAVATANTLHWNLMIRANVSNGSPVEALRLYNLLIAQGSPS 1321
            L+ + SS      AS VF+  + + +T  WNLMIR+   N  P EAL L+ L++      
Sbjct: 58   LISVSSSFGETQYASLVFNQ-LQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQ 116

Query: 1320 PDKFTFPFAITACSALSHLPKGMELHSLAIKAGFSDDTYVQNALIHLYFTCGSPDYARRV 1141
             DKFTFPF I AC A S +  G ++H LAIKAGF +D + QN L+ LYF CG PD  R+V
Sbjct: 117  FDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKV 176

Query: 1140 FDRMTMRTVGSWTXXXXXXXXXXXXXXAKQAFDEAPDKNVVTWTAMIDGFAKNGRPDEAF 961
            FD+M  R++ SWT              A+  F++ P +NVV+WTAMI  + KN RPDEAF
Sbjct: 177  FDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAF 236

Query: 960  ELFHSMQAHNVRPNAFTVVALLIACNELGSLHLGRRVHDYARSNSELSTNVYVGTALIDM 781
            +LF  MQ  +V+PN FT+V LL A  +LGSL +GR VHDYA  N     + ++GTALIDM
Sbjct: 237  QLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNG-FVLDCFLGTALIDM 295

Query: 780  YSKCGSLIDAVKVFDEMPVRSLATWNSMITSMGVHGRGTEAIALFREM-ERSGLKPDRIT 604
            YSKCGSL DA KVFD M  +SLATWNSMITS+GVHG G EA++LF EM E + ++PD IT
Sbjct: 296  YSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAIT 355

Query: 603  LFGVVCACSRAGMVEEACELFKYLVRCYRIEPELEHYKCMAELLGSAIVNGKEDEIVD 430
              GV+ AC+  G V++    F  +++ Y I P  EH  CM +LL  A+   K   +V+
Sbjct: 356  FVGVLSACANTGNVKDGLRYFTRMIQVYGISPIREHNACMIQLLEQALEVEKASNLVE 413