BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00010506
         (250 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       98   6e-19
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...    97   2e-18
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...    97   2e-18
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...    96   4e-18
emb|CBI26820.3| unnamed protein product [Vitis vinifera]               96   4e-18

>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
 Frame = +1

Query: 1    AFAKASAWYHVTYHPDYWGIYNEELNRPHFLSFAWCVYDKLIVIKQKNMRMRRAAE--SL 174
            A+AKASAWY+VTYHP YWG YNE +NR HFLSF WCVYDKLI IK++   +R A +  SL
Sbjct: 1040 AYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSL 1099

Query: 175  QRRMQSSLHI 204
            + R Q  LH+
Sbjct: 1100 EHRFQRGLHL 1109


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +1

Query: 7    AKASAWYHVTYHPDYWGIYNEELNRPHFLSFAWCVYDKLIVIKQKNMRMRRAAESLQR 180
            AKASAWYHVTYH  YWG+YNE LNR HFLSFAWCVYDKL+ IK+ N+  R+  E+L+R
Sbjct: 1042 AKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLER 1099


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +1

Query: 7    AKASAWYHVTYHPDYWGIYNEELNRPHFLSFAWCVYDKLIVIKQKNMRMRRAAESLQR 180
            AKASAWYHVTYH  YWG+YNE LNR HFLSFAWCVYDKL+ IK+ N+  R+  E+L+R
Sbjct: 1042 AKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLER 1099


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 41/58 (70%), Positives = 47/58 (81%)
 Frame = +1

Query: 7    AKASAWYHVTYHPDYWGIYNEELNRPHFLSFAWCVYDKLIVIKQKNMRMRRAAESLQR 180
            AKASAWYHVTYH  YWG+YNE LNR HFLSFAWCVYDKL+ IK+ N   R+  E+L+R
Sbjct: 1032 AKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNAGRRQRQETLER 1089


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 43/68 (63%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
 Frame = +1

Query: 4    FAKASAWYHVTYHPDYWGIYNEELNRPHFLSFAWCVYDKLIVIKQKNMRMRRA-AESLQR 180
            +AKASAWYHVTYHPDYWG YNE ++R HFLSF WCVYDKLI  K+K M  R     SL+R
Sbjct: 851  YAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLER 910

Query: 181  RMQSSLHI 204
            R+   L +
Sbjct: 911  RLSQGLRL 918