BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00009408
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...    94   2e-17
ref|XP_002991687.1| hypothetical protein SELMODRAFT_133908 [Sela...    89   8e-16
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ...    86   7e-15
ref|NP_179705.1| pentatricopeptide repeat-containing protein [Ar...    85   1e-14
ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containi...    83   3e-14

>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
 Frame = -1

Query: 403 RRLVSVPKSIHALARAGLIKPTIGSLILRRSLGDPVPPDSFVAILKSVSSPKSLMCGKQL 224
           +R+  + KS+  L+  G +   I SL L    G  +P  +   +L+  ++ KSL  GK +
Sbjct: 13  KRVPCIVKSLLHLSSQGQLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWV 72

Query: 223 HAHMVVTDFNH-DTLVQNYLIVMYGKCGSLDDAHSIFRLMSRKNLHSWNTLIDCYCKFGS 47
           H H+ VT     +T + N+LI MY KCG    A+ +F  MS +NL+SWN ++  Y K G 
Sbjct: 73  HLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGK 132

Query: 46  LSKAQQLFDEMPQRD 2
           +  A++LFD+MP++D
Sbjct: 133 IKPARKLFDKMPEKD 147



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 35/132 (26%), Positives = 65/132 (49%)
 Frame = -1

Query: 397 LVSVPKSIHALARAGLIKPTIGSLILRRSLGDPVPPDSFVAILKSVSSPKSLMCGKQLHA 218
           +VS    + A A++G     +      R LG      SF  +L      K L   KQ H 
Sbjct: 148 VVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHG 207

Query: 217 HMVVTDFNHDTLVQNYLIVMYGKCGSLDDAHSIFRLMSRKNLHSWNTLIDCYCKFGSLSK 38
            ++V  F  + ++ + ++  Y KC  + DA  +F  M  +++ +W T++  Y ++G +  
Sbjct: 208 QVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEA 267

Query: 37  AQQLFDEMPQRD 2
           A++LFD MP+++
Sbjct: 268 ARELFDLMPEKN 279



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
 Frame = -1

Query: 298 VPPDSFV--AILKSVSSPKSLMCGKQLHAHMVVTDFNHDTLVQNYLIVMYGKCGSLDDAH 125
           + PD F   + L + +S  SL  GKQ+H +++ T+   +T+V + LI MY KCG L+   
Sbjct: 311 IRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGR 370

Query: 124 SIFRLMSRK-NLHSWNTLIDCYCKFGSLSKAQQLFDEM 14
            +F LM  K ++  WNT+I    + G   +A Q+FD+M
Sbjct: 371 LVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDM 408


>ref|XP_002991687.1| hypothetical protein SELMODRAFT_133908 [Selaginella moellendorffii]
           gi|300140536|gb|EFJ07258.1| hypothetical protein
           SELMODRAFT_133908 [Selaginella moellendorffii]
          Length = 589

 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 41/93 (44%), Positives = 60/93 (64%)
 Frame = -1

Query: 286 SFVAILKSVSSPKSLMCGKQLHAHMVVTDFNHDTLVQNYLIVMYGKCGSLDDAHSIFRLM 107
           ++  +L+   + KSL  GK+LHAH+V +  +HDTL+ N LI MY  CGS+D+AH  F  +
Sbjct: 24  AYANLLRQCIACKSLREGKRLHAHIVASRQDHDTLLGNLLIQMYSSCGSMDEAHLAFSQI 83

Query: 106 SRKNLHSWNTLIDCYCKFGSLSKAQQLFDEMPQ 8
            R N  SWN L+  Y + G +  A+++FD MPQ
Sbjct: 84  QRSNTFSWNILLGAYVRNGDIVLAREVFDRMPQ 116



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
 Frame = -1

Query: 304 DPVPPD--SFVAILKSVSSPKSLMCGKQLHAHMVVTDFNHDTLVQNYLIVMYGKCGSLDD 131
           D + PD  +F+  + S  +   L  G+ LHA +    ++  + V N L+ MYGKCG+L +
Sbjct: 366 DGIKPDEMAFLVAIDSCGAASDLARGRFLHAEIDAAGYDSSSTVANSLVGMYGKCGNLQE 425

Query: 130 AHSIF-RLMSRKNLHSWNTLIDCYCKFGSLSKAQQLFDEMPQ 8
           A  +F R  +R++   WNT+I CY + G + +A  L   M Q
Sbjct: 426 ARRLFDRGGARRSSALWNTMISCYSQAGFVREALDLLHAMEQ 467


>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491679|gb|AES72882.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 705

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 44/122 (36%), Positives = 70/122 (57%)
 Frame = -1

Query: 367 LARAGLIKPTIGSLILRRSLGDPVPPDSFVAILKSVSSPKSLMCGKQLHAHMVVTDFNHD 188
           +A+ GL++  +G L    S  D  P   F  +L +    KS+   + +HA ++ T F+ +
Sbjct: 1   MAKHGLVRKVVGDL----SFLDSSP---FAKLLDTCVKSKSVFEARLVHARIIKTQFSSE 53

Query: 187 TLVQNYLIVMYGKCGSLDDAHSIFRLMSRKNLHSWNTLIDCYCKFGSLSKAQQLFDEMPQ 8
             +QN L+ +YGKCG L+DA  +F  M ++N  SWN ++    KFG+L +A  LF  MP+
Sbjct: 54  IFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPE 113

Query: 7   RD 2
           RD
Sbjct: 114 RD 115


>ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g21090 gi|4803934|gb|AAD29807.1| unknown protein
           [Arabidopsis thaliana] gi|330252028|gb|AEC07122.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 597

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
 Frame = -1

Query: 307 GDPVPPDSFVAILKSVSSPKSLMCGKQLHAHMVVTDFNH-DTLVQNYLIVMYGKCGSLDD 131
           G  +P D   ++L+     KSL  GK +H H+ +T F   +TL+ N+LI MY KCG   D
Sbjct: 41  GIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPID 100

Query: 130 AHSIFRLMSRKNLHSWNTLIDCYCKFGSLSKAQQLFDEMPQRD 2
           A  +F  M  +NL+SWN ++  Y K G L +A+ +FD MP+RD
Sbjct: 101 ACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERD 143



 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 31/95 (32%), Positives = 52/95 (54%)
 Frame = -1

Query: 286 SFVAILKSVSSPKSLMCGKQLHAHMVVTDFNHDTLVQNYLIVMYGKCGSLDDAHSIFRLM 107
           SF  +L +    + L   +Q H  ++V  F  + ++   +I  Y KCG ++ A   F  M
Sbjct: 181 SFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEM 240

Query: 106 SRKNLHSWNTLIDCYCKFGSLSKAQQLFDEMPQRD 2
           + K++H W TLI  Y K G +  A++LF EMP+++
Sbjct: 241 TVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKN 275



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
 Frame = -1

Query: 358 AGLIKPTIGSLIL---RRSLGDPVPPDSFV--AILKSVSSPKSLMCGKQLHAHMVVTDFN 194
           AG ++   G+  L   R+ +   V P+ F   + L + +S  SL  GK++H +M+ T+  
Sbjct: 284 AGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVR 343

Query: 193 HDTLVQNYLIVMYGKCGSLDDAHSIFRLMSRK-NLHSWNTLIDCYCKFGSLSKAQQLFDE 17
            + +V + LI MY K GSL+ +  +FR+   K +   WNT+I    + G   KA ++ D+
Sbjct: 344 PNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDD 403

Query: 16  M 14
           M
Sbjct: 404 M 404


>ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 39/83 (46%), Positives = 55/83 (66%)
 Frame = -1

Query: 250 KSLMCGKQLHAHMVVTDFNHDTLVQNYLIVMYGKCGSLDDAHSIFRLMSRKNLHSWNTLI 71
           ++L  G+++HAH   ++F     + N L+ MY KCGSL DA  +F  M  ++L SWNT+I
Sbjct: 101 RALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMI 160

Query: 70  DCYCKFGSLSKAQQLFDEMPQRD 2
             Y K G L +A++LFDEMPQRD
Sbjct: 161 VGYAKLGRLEQARKLFDEMPQRD 183



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 32/90 (35%), Positives = 53/90 (58%)
 Frame = -1

Query: 277 AILKSVSSPKSLMCGKQLHAHMVVTDFNHDTLVQNYLIVMYGKCGSLDDAHSIFRLMSRK 98
           A+  S + P  L  GK++H +++ T+ N D +V + L+ +YGKCGSLD+A  IF  M  +
Sbjct: 226 ALAASAAIP-CLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDR 284

Query: 97  NLHSWNTLIDCYCKFGSLSKAQQLFDEMPQ 8
           ++ SW T+I    + G   +   LF ++ Q
Sbjct: 285 DVVSWTTMIHRCFEDGRREEGFLLFRDLMQ 314