BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00008852
         (1160 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group] g...   534   e-149
ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [S...   533   e-149
ref|XP_003578512.1| PREDICTED: transcription initiation factor I...   532   e-149
dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]    531   e-148
ref|XP_002513521.1| transcription initiation factor iib, putativ...   530   e-148

>ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
            gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName:
            Full=Transcription initiation factor IIB; AltName:
            Full=General transcription factor TFIIB
            gi|18481632|gb|AAL73491.1|AF464908_1 general
            transcription factor TFIIB [Oryza sativa]
            gi|50725809|dbj|BAD33339.1| Transcription initiation
            factor IIB [Oryza sativa Japonica Group]
            gi|50726577|dbj|BAD34211.1| Transcription initiation
            factor IIB [Oryza sativa Japonica Group]
            gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa
            Japonica Group] gi|125564497|gb|EAZ09877.1| hypothetical
            protein OsI_32170 [Oryza sativa Indica Group]
            gi|125606444|gb|EAZ45480.1| hypothetical protein
            OsJ_30135 [Oryza sativa Japonica Group]
            gi|347737122|gb|AEP20532.1| transcription factor [Oryza
            sativa Japonica Group]
          Length = 312

 Score =  534 bits (1375), Expect = e-149
 Identities = 268/314 (85%), Positives = 290/314 (92%)
 Frame = +3

Query: 138  MSDSFCPDCKRSTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESADNDPVRVG 317
            MSDSFCPDCK+ TEV FDHSAGDTVC+ECGLVLEAHS+DETSEWRTFANES+DNDPVRVG
Sbjct: 1    MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60

Query: 318  GPSNPLLADGGLSTVVISRPSGTNSDSLPXXXXXXXXXXXXNPDRSLILAFRTIATMADR 497
            GP+NPLL DGGLSTV I++P+G   + L             NPDRSLILAFRTIA MADR
Sbjct: 61   GPTNPLLTDGGLSTV-IAKPNGAQGEFLSSSLGRWQNRGS-NPDRSLILAFRTIANMADR 118

Query: 498  LGLVATIKDRANEIYKKVEDLKSIKGRNQDAILAACLYIACRQEDKPRTVKEICSVANGA 677
            LGLVATIKDRANEIYKKVEDLKSI+GRNQDAILAACLYIACRQED+PRTVKEICSVANGA
Sbjct: 119  LGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGA 178

Query: 678  TKKEIGRAKEFIVKQLEIEMGQSMEMGTIHAGDFLRRFCSHLGMNNQAIKAAQEAVQKSE 857
            TKKEIGRAKEFIVKQLE+EMGQSMEMGTIHAGDFLRRFCS LGMNNQA+KAAQEAVQ+SE
Sbjct: 179  TKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSE 238

Query: 858  ELDIRRSPISIAAAVIYMITQLSEEKKPLRDISVATGVAEGTIKNSYKDLYPYASRLIPS 1037
            ELDIRRSPISIAAAVIYMITQLS++KKPL+DIS+ATGVAEGTI+NSYKDLYPYASRLIP+
Sbjct: 239  ELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPN 298

Query: 1038 FFAKEEDLKNLCSP 1079
             +AKEEDLKNLC+P
Sbjct: 299  TYAKEEDLKNLCTP 312


>ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
            gi|241923949|gb|EER97093.1| hypothetical protein
            SORBIDRAFT_02g031020 [Sorghum bicolor]
          Length = 312

 Score =  533 bits (1373), Expect = e-149
 Identities = 268/314 (85%), Positives = 289/314 (92%)
 Frame = +3

Query: 138  MSDSFCPDCKRSTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESADNDPVRVG 317
            MSDSFCPDCK+ TEV FDHSAGDTVC+ECGLVLEAHS+DETSEWRTFANES DNDPVRVG
Sbjct: 1    MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 318  GPSNPLLADGGLSTVVISRPSGTNSDSLPXXXXXXXXXXXXNPDRSLILAFRTIATMADR 497
            GP+NPLL DGGLSTV I++P+G   + L             NPDRSLILAFRTIA MADR
Sbjct: 61   GPTNPLLTDGGLSTV-IAKPNGAQGEFLSSSLGRWQNRGS-NPDRSLILAFRTIANMADR 118

Query: 498  LGLVATIKDRANEIYKKVEDLKSIKGRNQDAILAACLYIACRQEDKPRTVKEICSVANGA 677
            LGLVATIKDRANEIYKKVEDLKSI+GRNQDAILAACLYIACRQED+PRTVKEICSVANGA
Sbjct: 119  LGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGA 178

Query: 678  TKKEIGRAKEFIVKQLEIEMGQSMEMGTIHAGDFLRRFCSHLGMNNQAIKAAQEAVQKSE 857
            TKKEIGRAKEFIVKQLE+EMGQSMEMGTIHAGDFLRRFCS LGMNNQA+KAAQEAVQ+SE
Sbjct: 179  TKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSE 238

Query: 858  ELDIRRSPISIAAAVIYMITQLSEEKKPLRDISVATGVAEGTIKNSYKDLYPYASRLIPS 1037
            ELDIRRSPISIAAAVIYMITQLSE+KKPL+DIS+ATGVAEGTI+NSYKDLYPYA+RLIP+
Sbjct: 239  ELDIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPN 298

Query: 1038 FFAKEEDLKNLCSP 1079
             +AKEEDLKNLC+P
Sbjct: 299  TYAKEEDLKNLCTP 312


>ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
            distachyon]
          Length = 312

 Score =  532 bits (1370), Expect = e-149
 Identities = 268/314 (85%), Positives = 289/314 (92%)
 Frame = +3

Query: 138  MSDSFCPDCKRSTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESADNDPVRVG 317
            MSD+FCPDCK+ TEV FDHSAGDTVC+ECGLVLEAHS+DETSEWRTFANES DNDPVRVG
Sbjct: 1    MSDTFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 318  GPSNPLLADGGLSTVVISRPSGTNSDSLPXXXXXXXXXXXXNPDRSLILAFRTIATMADR 497
            GPSNPLL DGGLSTV I++P+G + + L             NPDRSLILAFRTIA MADR
Sbjct: 61   GPSNPLLTDGGLSTV-IAKPNGAHGEFLSSSLGRWQNRGS-NPDRSLILAFRTIANMADR 118

Query: 498  LGLVATIKDRANEIYKKVEDLKSIKGRNQDAILAACLYIACRQEDKPRTVKEICSVANGA 677
            LGLVATIKDRANEIYKKVEDLKSI+GRNQDAILAACLYIACRQED+PRTVKEICSVANGA
Sbjct: 119  LGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGA 178

Query: 678  TKKEIGRAKEFIVKQLEIEMGQSMEMGTIHAGDFLRRFCSHLGMNNQAIKAAQEAVQKSE 857
            TKKEIGRAKEFIVKQLE+EMGQSMEMGTIHAGDFLRRFCS LGMNN A+KAAQEAVQ+SE
Sbjct: 179  TKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSE 238

Query: 858  ELDIRRSPISIAAAVIYMITQLSEEKKPLRDISVATGVAEGTIKNSYKDLYPYASRLIPS 1037
            ELDIRRSPISIAAAVIYMITQLSE+KKPL+DIS+ATGVAEGTI+NSYKDLYPYASRLIP+
Sbjct: 239  ELDIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPN 298

Query: 1038 FFAKEEDLKNLCSP 1079
             +AKEEDLKNLC+P
Sbjct: 299  TYAKEEDLKNLCTP 312


>dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 312

 Score =  531 bits (1368), Expect = e-148
 Identities = 267/314 (85%), Positives = 289/314 (92%)
 Frame = +3

Query: 138  MSDSFCPDCKRSTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESADNDPVRVG 317
            MSD++CPDCK+ TEV FDHSAGDTVC+ECGLVLEAHS+DETSEWRTFANES DNDPVRVG
Sbjct: 1    MSDTYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 318  GPSNPLLADGGLSTVVISRPSGTNSDSLPXXXXXXXXXXXXNPDRSLILAFRTIATMADR 497
            GPSNPLL DGGLSTV I++P+G + D L             NPDRSLILAFRTIA MADR
Sbjct: 61   GPSNPLLTDGGLSTV-IAKPNGAHGDFLSSSLGRWQNRGS-NPDRSLILAFRTIANMADR 118

Query: 498  LGLVATIKDRANEIYKKVEDLKSIKGRNQDAILAACLYIACRQEDKPRTVKEICSVANGA 677
            LGLVATIKDRANEIYKKVEDLKSI+GRNQDAILAACLYIACRQED+PRTVKEICSVANGA
Sbjct: 119  LGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGA 178

Query: 678  TKKEIGRAKEFIVKQLEIEMGQSMEMGTIHAGDFLRRFCSHLGMNNQAIKAAQEAVQKSE 857
            TKKEIGRAKEFIVKQLE+EMGQSMEMGTIHAGDFLRRFCS LGMNN A+KAAQEAVQ+SE
Sbjct: 179  TKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSE 238

Query: 858  ELDIRRSPISIAAAVIYMITQLSEEKKPLRDISVATGVAEGTIKNSYKDLYPYASRLIPS 1037
            ELDIRRSPISIAAAVIYMITQLSE+KKPL+DIS+ATGVAEGTI+NSYKDLYPYA+RLIP+
Sbjct: 239  ELDIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPN 298

Query: 1038 FFAKEEDLKNLCSP 1079
             +AKEEDLKNLC+P
Sbjct: 299  SYAKEEDLKNLCTP 312


>ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
            gi|223547429|gb|EEF48924.1| transcription initiation
            factor iib, putative [Ricinus communis]
          Length = 312

 Score =  530 bits (1366), Expect = e-148
 Identities = 265/314 (84%), Positives = 290/314 (92%)
 Frame = +3

Query: 138  MSDSFCPDCKRSTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESADNDPVRVG 317
            M+D++CPDCKR TEVVFDHSAGDTVCSECGLVLE+HSIDETSEWRTFANESADNDPVRVG
Sbjct: 1    MADTYCPDCKRPTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESADNDPVRVG 60

Query: 318  GPSNPLLADGGLSTVVISRPSGTNSDSLPXXXXXXXXXXXXNPDRSLILAFRTIATMADR 497
            GPSNPLLADGGLSTV IS+P+G + D L             NPDRSLI AF+TIATM+DR
Sbjct: 61   GPSNPLLADGGLSTV-ISKPTGASGDFLTSSLGRWQNRGS-NPDRSLIQAFKTIATMSDR 118

Query: 498  LGLVATIKDRANEIYKKVEDLKSIKGRNQDAILAACLYIACRQEDKPRTVKEICSVANGA 677
            LGLVATIKDRANEIYKKVED K ++GRNQDA+LAACLYIACRQEDKPRTVKEICSVANGA
Sbjct: 119  LGLVATIKDRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPRTVKEICSVANGA 178

Query: 678  TKKEIGRAKEFIVKQLEIEMGQSMEMGTIHAGDFLRRFCSHLGMNNQAIKAAQEAVQKSE 857
            TKKEIGRAKE+IVKQLE+E+GQSMEMGTIHAGDFLRRFCSHLGMNNQA+KAAQEAV+KSE
Sbjct: 179  TKKEIGRAKEYIVKQLEVELGQSMEMGTIHAGDFLRRFCSHLGMNNQAVKAAQEAVKKSE 238

Query: 858  ELDIRRSPISIAAAVIYMITQLSEEKKPLRDISVATGVAEGTIKNSYKDLYPYASRLIPS 1037
            ELDIRRSPISIAAA+IYMITQLSEEKK L+DIS +TGVAEGTI+NSYKDLYPYASR++PS
Sbjct: 239  ELDIRRSPISIAAAIIYMITQLSEEKKLLKDISTSTGVAEGTIRNSYKDLYPYASRIVPS 298

Query: 1038 FFAKEEDLKNLCSP 1079
            ++AKEEDL NLCSP
Sbjct: 299  WYAKEEDLINLCSP 312