BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00008816
         (645 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guinee...   251   8e-65
ref|XP_002307132.1| predicted protein [Populus trichocarpa] gi|2...   245   6e-63
ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II su...   245   6e-63
ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycin...   242   4e-62
ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II su...   242   5e-62

>gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guineensis]
          Length = 138

 Score =  251 bits (641), Expect = 8e-65
 Identities = 128/138 (92%), Positives = 133/138 (96%)
 Frame = -3

Query: 583 MSSEEEENAAELKIGDEFLKAKCLMNCEVALILDRRYEQLQQMSDDPTNQISQVFEKSMQ 404
           MS EEEENAAELKIG+EFLKAKCLMNCEVALILDR+YEQLQQ+SDDPTNQISQVFEKSMQ
Sbjct: 1   MSGEEEENAAELKIGEEFLKAKCLMNCEVALILDRKYEQLQQLSDDPTNQISQVFEKSMQ 60

Query: 403 YVKRFSRYKNPDAVRQVREILSRNRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRALE 224
           YVKRFSRYKN DAVRQVREILSR RLAEFELCVLGNLCPETVEEAIAMVPSIKSKGR  E
Sbjct: 61  YVKRFSRYKNQDAVRQVREILSRYRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRIHE 120

Query: 223 EDAIEKMLHDLSLIKKFE 170
           +DAIEKML+DLSLIKKFE
Sbjct: 121 DDAIEKMLNDLSLIKKFE 138


>ref|XP_002307132.1| predicted protein [Populus trichocarpa]
           gi|224096326|ref|XP_002310604.1| predicted protein
           [Populus trichocarpa] gi|222853507|gb|EEE91054.1|
           predicted protein [Populus trichocarpa]
           gi|222856581|gb|EEE94128.1| predicted protein [Populus
           trichocarpa]
          Length = 138

 Score =  245 bits (625), Expect = 6e-63
 Identities = 122/138 (88%), Positives = 133/138 (96%)
 Frame = -3

Query: 583 MSSEEEENAAELKIGDEFLKAKCLMNCEVALILDRRYEQLQQMSDDPTNQISQVFEKSMQ 404
           MS EEEENAAELKIGD+FLKAKCLMNCEVALIL+ +YEQLQQMSDDP NQ+SQVFEKS+Q
Sbjct: 1   MSGEEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60

Query: 403 YVKRFSRYKNPDAVRQVREILSRNRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRALE 224
           YVKRFSRYKNPDAVRQVREILSR +LAEFELCVLGNLCPETVEEAIAMVPSIK+KGRA +
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 223 EDAIEKMLHDLSLIKKFE 170
           ++AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138


>ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
           vinifera] gi|147856183|emb|CAN80281.1| hypothetical
           protein VITISV_017448 [Vitis vinifera]
           gi|302143481|emb|CBI22042.3| unnamed protein product
           [Vitis vinifera]
          Length = 138

 Score =  245 bits (625), Expect = 6e-63
 Identities = 122/138 (88%), Positives = 133/138 (96%)
 Frame = -3

Query: 583 MSSEEEENAAELKIGDEFLKAKCLMNCEVALILDRRYEQLQQMSDDPTNQISQVFEKSMQ 404
           MS EEEENAAELKIGDEFLKAKCLMNCEVA+IL+ +YEQLQQMSDDP NQ+SQVFEKS+Q
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQ 60

Query: 403 YVKRFSRYKNPDAVRQVREILSRNRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRALE 224
           YVKRFSRYKNPDAVRQVREILSR +LAEFELCVLGNLCPETVEEAIAMVPSIK+KGRA +
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 223 EDAIEKMLHDLSLIKKFE 170
           ++AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138


>ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycine max]
           gi|255625623|gb|ACU13156.1| unknown [Glycine max]
          Length = 138

 Score =  242 bits (618), Expect = 4e-62
 Identities = 121/138 (87%), Positives = 132/138 (95%)
 Frame = -3

Query: 583 MSSEEEENAAELKIGDEFLKAKCLMNCEVALILDRRYEQLQQMSDDPTNQISQVFEKSMQ 404
           MS EEEENAAELKIGDEFLKAKCLMNCEV+LIL+ +YEQLQQ SDDP NQISQVFEKS+Q
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQ 60

Query: 403 YVKRFSRYKNPDAVRQVREILSRNRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRALE 224
           YVKRFSRYKNPDAVRQVREIL+R +LAEFELCVLGNLCPETVEEAIAMVPSIKS+GRA +
Sbjct: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQD 120

Query: 223 EDAIEKMLHDLSLIKKFE 170
           ++AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138


>ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
           [Cucumis sativus] gi|449526195|ref|XP_004170099.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB4-like [Cucumis sativus]
          Length = 138

 Score =  242 bits (617), Expect = 5e-62
 Identities = 118/138 (85%), Positives = 133/138 (96%)
 Frame = -3

Query: 583 MSSEEEENAAELKIGDEFLKAKCLMNCEVALILDRRYEQLQQMSDDPTNQISQVFEKSMQ 404
           MS EEEENAAELKIGDEFLKAKCLMNCEV+LIL+ +YEQLQQMS+DPTNQ+SQVFEKS+Q
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60

Query: 403 YVKRFSRYKNPDAVRQVREILSRNRLAEFELCVLGNLCPETVEEAIAMVPSIKSKGRALE 224
           YVKRFSRYKNPDAVRQVRE+LSR +LAEFELCVLGNLCPETVEEAIAMVPS+K+KGR  +
Sbjct: 61  YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120

Query: 223 EDAIEKMLHDLSLIKKFE 170
           ++AIEKML+DLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138