BLASTX nr result

ID: Dioscorea21_contig00008664 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00008664
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530556.1| PREDICTED: zinc finger CCCH domain-containin...    81   8e-14
gb|ACU23866.1| unknown [Glycine max]                                   81   8e-14
ref|XP_003525299.1| PREDICTED: zinc finger CCCH domain-containin...    81   1e-13
ref|XP_002275926.1| PREDICTED: zinc finger CCCH domain-containin...    72   4e-11
emb|CAN83255.1| hypothetical protein VITISV_036981 [Vitis vinifera]    72   4e-11

>ref|XP_003530556.1| PREDICTED: zinc finger CCCH domain-containing protein 20-like
           [Glycine max]
          Length = 355

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 50/123 (40%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
 Frame = +3

Query: 3   ESYDGSPLRHHALDAYFTKNMFXXXXXXXXXXXXXXXXXXXXXXXXXXRRAPVGASVNEV 182
           +SYDGSPLRH A+++   K +                             +P+  SVNE+
Sbjct: 187 DSYDGSPLRH-AIESSCAKTLAPAPFVSSPGSVSPPLESPPM--------SPMTVSVNEM 237

Query: 183 LASLRQLQLSKAKSAPSSWGLQAGCGLGSPRSPAVRGGGGFSSLPATPTRS-TVGSSGWF 359
           +ASLR LQL K KS PSSW +    G GSPR P +R   GF SLP TPT++ T G   +F
Sbjct: 238 VASLRNLQLGKVKSLPSSWNVMGPSGFGSPRGPMIR--PGFFSLPTTPTQAPTRGGVNYF 295

Query: 360 DRW 368
           D+W
Sbjct: 296 DKW 298


>gb|ACU23866.1| unknown [Glycine max]
          Length = 355

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 50/123 (40%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
 Frame = +3

Query: 3   ESYDGSPLRHHALDAYFTKNMFXXXXXXXXXXXXXXXXXXXXXXXXXXRRAPVGASVNEV 182
           +SYDGSPLRH A+++   K +                             +P+  SVNE+
Sbjct: 187 DSYDGSPLRH-AIESSCAKTLAPAPFVSSPGSVSPPLESPPM--------SPMTVSVNEM 237

Query: 183 LASLRQLQLSKAKSAPSSWGLQAGCGLGSPRSPAVRGGGGFSSLPATPTRS-TVGSSGWF 359
           +ASLR LQL K KS PSSW +    G GSPR P +R   GF SLP TPT++ T G   +F
Sbjct: 238 VASLRNLQLGKVKSLPSSWNVMGPSGFGSPRGPMIR--PGFFSLPTTPTQAPTRGGVNYF 295

Query: 360 DRW 368
           D+W
Sbjct: 296 DKW 298


>ref|XP_003525299.1| PREDICTED: zinc finger CCCH domain-containing protein 20-like
           [Glycine max]
          Length = 353

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 50/123 (40%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
 Frame = +3

Query: 3   ESYDGSPLRHHALDAYFTKNMFXXXXXXXXXXXXXXXXXXXXXXXXXXRRAPVGASVNEV 182
           +SYDGSPLRH A+++   K+                              +P+  SVNE+
Sbjct: 187 DSYDGSPLRH-AIESSCAKS-----------HPFVASPGSASSPVESPPMSPMTVSVNEM 234

Query: 183 LASLRQLQLSKAKSAPSSWGLQAGCGLGSPRSPAVRGGGGFSSLPATPTRS-TVGSSGWF 359
           +ASLR LQL K KS PSSW +    G GSPR P +R   GF SLP TPT++ T G   +F
Sbjct: 235 VASLRNLQLGKVKSLPSSWNVMGSSGFGSPRGPMIR--PGFFSLPTTPTQAPTRGGVNYF 292

Query: 360 DRW 368
           D+W
Sbjct: 293 DQW 295


>ref|XP_002275926.1| PREDICTED: zinc finger CCCH domain-containing protein 20 [Vitis
           vinifera]
          Length = 379

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 49/124 (39%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
 Frame = +3

Query: 3   ESYDGSPLRHHALDAYFTKNMFXXXXXXXXXXXXXXXXXXXXXXXXXXRRAPVGA-SVNE 179
           ESYDGSPLR  A D Y +K  F                                  S++E
Sbjct: 207 ESYDGSPLRL-AFDPYLSKGSFISSPTSTLISPPVSPPSDSPPMSPNSPSFTGSFNSMSE 265

Query: 180 VLASLRQLQLSKAKSAPSSWGLQAGCGLGSPRSPAVRGGGGFSSLPATPTRSTVGSS-GW 356
           ++AS+R LQ+ KAK +P SWG+Q G G GSPR   +R   GF SLP+TPTR+   S  G 
Sbjct: 266 LVASMRNLQVGKAKMSPQSWGVQMGSGFGSPRGSTLR--PGFCSLPSTPTRTPARSGLGG 323

Query: 357 FDRW 368
            D W
Sbjct: 324 LDVW 327


>emb|CAN83255.1| hypothetical protein VITISV_036981 [Vitis vinifera]
          Length = 426

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 49/124 (39%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
 Frame = +3

Query: 3   ESYDGSPLRHHALDAYFTKNMFXXXXXXXXXXXXXXXXXXXXXXXXXXRRAPVGA-SVNE 179
           ESYDGSPLR  A D Y +K  F                                  S++E
Sbjct: 254 ESYDGSPLRL-AFDPYLSKGSFISSPTSTLISPPVSPPSDSPPMSPNSPSFTGSFNSMSE 312

Query: 180 VLASLRQLQLSKAKSAPSSWGLQAGCGLGSPRSPAVRGGGGFSSLPATPTRSTVGSS-GW 356
           ++AS+R LQ+ KAK +P SWG+Q G G GSPR   +R   GF SLP+TPTR+   S  G 
Sbjct: 313 LVASMRNLQVGKAKMSPQSWGVQMGSGFGSPRGSTLR--PGFCSLPSTPTRTPARSGLGG 370

Query: 357 FDRW 368
            D W
Sbjct: 371 LDVW 374


Top