BLASTX nr result

ID: Dioscorea21_contig00008583 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00008583
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002894599.1| hypothetical protein ARALYDRAFT_337754 [Arab...   141   5e-32
ref|XP_002868724.1| hypothetical protein ARALYDRAFT_916372 [Arab...   141   5e-32
ref|NP_175868.1| gamma histone variant H2AX [Arabidopsis thalian...   141   5e-32
ref|XP_004135645.1| PREDICTED: probable histone H2AXb-like [Cucu...   140   8e-32
ref|XP_002892475.1| hypothetical protein ARALYDRAFT_888122 [Arab...   140   8e-32

>ref|XP_002894599.1| hypothetical protein ARALYDRAFT_337754 [Arabidopsis lyrata subsp.
           lyrata] gi|297340441|gb|EFH70858.1| hypothetical protein
           ARALYDRAFT_337754 [Arabidopsis lyrata subsp. lyrata]
          Length = 209

 Score =  141 bits (356), Expect = 5e-32
 Identities = 78/99 (78%), Positives = 78/99 (78%), Gaps = 2/99 (2%)
 Frame = -3

Query: 291 MSSGAA--TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXX 118
           MSSGA   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAP    
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 117 XXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDE 1
                        AGNAARDNKK RIVPRHIQLAVRNDE
Sbjct: 61  AVLEYLAAELLELAGNAARDNKKTRIVPRHIQLAVRNDE 99


>ref|XP_002868724.1| hypothetical protein ARALYDRAFT_916372 [Arabidopsis lyrata subsp.
           lyrata] gi|297314560|gb|EFH44983.1| hypothetical protein
           ARALYDRAFT_916372 [Arabidopsis lyrata subsp. lyrata]
          Length = 142

 Score =  141 bits (356), Expect = 5e-32
 Identities = 78/99 (78%), Positives = 78/99 (78%), Gaps = 2/99 (2%)
 Frame = -3

Query: 291 MSSGAA--TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXX 118
           MSSGA   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAP    
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 117 XXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDE 1
                        AGNAARDNKK RIVPRHIQLAVRNDE
Sbjct: 61  AVLEYLAAELLELAGNAARDNKKTRIVPRHIQLAVRNDE 99


>ref|NP_175868.1| gamma histone variant H2AX [Arabidopsis thaliana]
           gi|75313113|sp|Q9S9K7.1|H2AXB_ARATH RecName:
           Full=Probable histone H2AXb; AltName: Full=HTA3
           gi|15724172|gb|AAL06478.1|AF411788_1 At1g54690/T22H22_12
           [Arabidopsis thaliana] gi|3776566|gb|AAC64883.1| Strong
           similarity to histone H2A gb|AJ006768 from Cicer
           arietinum [Arabidopsis thaliana]
           gi|20334846|gb|AAM16179.1| At1g54690/T22H22_12
           [Arabidopsis thaliana] gi|21553797|gb|AAM62890.1|
           histone H2A, putative [Arabidopsis thaliana]
           gi|332195014|gb|AEE33135.1| gamma histone variant H2AX
           [Arabidopsis thaliana]
          Length = 142

 Score =  141 bits (356), Expect = 5e-32
 Identities = 78/99 (78%), Positives = 78/99 (78%), Gaps = 2/99 (2%)
 Frame = -3

Query: 291 MSSGAA--TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXX 118
           MSSGA   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAP    
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 117 XXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDE 1
                        AGNAARDNKK RIVPRHIQLAVRNDE
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDE 99


>ref|XP_004135645.1| PREDICTED: probable histone H2AXb-like [Cucumis sativus]
           gi|449485770|ref|XP_004157270.1| PREDICTED: probable
           histone H2AXb-like [Cucumis sativus]
          Length = 140

 Score =  140 bits (354), Expect = 8e-32
 Identities = 75/97 (77%), Positives = 76/97 (78%)
 Frame = -3

Query: 291 MSSGAATTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXX 112
           MSS   +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAP      
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 111 XXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDE 1
                      AGNAARDNKKNRIVPRHIQLAVRNDE
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDE 97


>ref|XP_002892475.1| hypothetical protein ARALYDRAFT_888122 [Arabidopsis lyrata subsp.
           lyrata] gi|297338317|gb|EFH68734.1| hypothetical protein
           ARALYDRAFT_888122 [Arabidopsis lyrata subsp. lyrata]
          Length = 142

 Score =  140 bits (354), Expect = 8e-32
 Identities = 74/95 (77%), Positives = 76/95 (80%)
 Frame = -3

Query: 285 SGAATTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXX 106
           +G+ TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAP        
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 105 XXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDE 1
                    AGNAARDNKK RIVPRHIQLAVRNDE
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDE 99


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