BLASTX nr result
ID: Dioscorea21_contig00008455
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00008455
(1813 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI32760.3| unnamed protein product [Vitis vinifera] 479 e-133
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ... 474 e-131
ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|2... 450 e-124
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [... 414 e-113
ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis ... 407 e-111
>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 479 bits (1234), Expect = e-133
Identities = 273/589 (46%), Positives = 385/589 (65%), Gaps = 15/589 (2%)
Frame = -3
Query: 1769 MEAGRGLISSPPALNIPRNHSRSTFSTSVPVLHDQTSRAVSSMPTMSVVRHFPASVLSHE 1590
MEAG ++SS P+ PR H R++ S+SV +LHDQ + AV+S+PT ++ R FP SVL E
Sbjct: 1 MEAGTNILSSTPSFP-PRTHFRNS-SSSVLMLHDQVAPAVASIPT-TIARKFPTSVLLQE 57
Query: 1589 QRDDYKT-SYSVREEKSLQ-----HGESGLPFSEEKEKYNFEQYLKHFERRLLHQPGFWY 1428
QRD+Y+ ++++E++ Q + ++E+ + QY+ +FER+LL QPG WY
Sbjct: 58 QRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWY 117
Query: 1427 LCHLAHHSEK-PVTPTSVDSVTSGTNGISSIVVSPEEQNNIDSVRPEDVLALANRAMIXX 1251
+ EK P + + + S+T+ + +N++D V+P DVLALA +A+
Sbjct: 118 SLPSSQTGEKSPFSSSIMKSITT------------DIENSMD-VKPCDVLALAKKALSAS 164
Query: 1250 XXXXXXXXXSVVLESEFNESYFIGLDVEDS-------IIGKEILIDEPTIXXXXXXXXXX 1092
S + + +G D+EDS I + ++E T+
Sbjct: 165 KQAV----------SLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRS 214
Query: 1091 XXXKASKKPSDDVYKVASSMAMNISKKLHKSHNQNDPLGLFLGLPETKQLLTVKEEKVLF 912
+ P V++ S + +K+++ ++ DPL LFL PET++LLT KEE L
Sbjct: 215 KKR---RNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELI 271
Query: 911 AQIQDLMRLNEAKERLCADFNREPTIAEWAQAVGMSCHDLQSSLLTGIQSRDRLVYANFL 732
QIQ+LMRL E K+RL + REPT+ EWA+AVG+SC LQS L +G +SR +L+YAN
Sbjct: 272 VQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLR 331
Query: 731 LVVHIARQYEGKGLSIQDLLQEGSMGLMKSLEKFKPKAGCRFPSYAYWWIRQSIRKAIFL 552
+VVHIA+QY+G+GL++QDLLQEGSMGLM S+EKFKP AGCRF SYAYWWIRQ++RKAIF
Sbjct: 332 MVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQ 391
Query: 551 KSRMIRLPENIYALLKTIRAARRSCIQEG-RVPTKEELARRVGITVEKLQNTLALSRNPI 375
SR IRLPEN+Y+LL ++ A+R IQEG PTKEE+A RVGIT+EKLQ L +R P+
Sbjct: 392 HSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPL 451
Query: 374 SIQERPWADQDVTLQEITADPVIETPELSVSKRMMRQHIRNLLGLLSPREQEIIQWRFGI 195
S+Q+ WADQD T QE+TAD IE P++SV+K++MRQH+RNLL +L+P+E+ II+ RFGI
Sbjct: 452 SMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGI 511
Query: 194 NNSKPMTLSEIGNVYGLSKERVRQVETHAMNKLKSYLPTQGLQAYAELL 48
+ P TLSEIG V+G SKERVRQ+E A++KLK L + GL++Y +LL
Sbjct: 512 GDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLL 560
>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 474 bits (1219), Expect = e-131
Identities = 272/599 (45%), Positives = 384/599 (64%), Gaps = 25/599 (4%)
Frame = -3
Query: 1769 MEAGRGLISSPPALNIPRNHSRSTFSTS----------VPVLHDQTSRAVSSMPTMSVVR 1620
MEAG ++SS P+ PR H R++ S+ V +LHDQ + AV+S+PT ++ R
Sbjct: 1 MEAGTNILSSTPSFP-PRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPT-TIAR 58
Query: 1619 HFPASVLSHEQRDDYKT-SYSVREEKSLQ-----HGESGLPFSEEKEKYNFEQYLKHFER 1458
FP SVL EQRD+Y+ ++++E++ Q + ++E+ + QY+ +FER
Sbjct: 59 KFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFER 118
Query: 1457 RLLHQPGFWYLCHLAHHSEK-PVTPTSVDSVTSGTNGISSIVVSPEEQNNIDSVRPEDVL 1281
+LL QPG WY + EK P + + + S+T+ + +N++D V+P DVL
Sbjct: 119 QLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITT------------DIENSMD-VKPCDVL 165
Query: 1280 ALANRAMIXXXXXXXXXXXSVVLESEFNESYFIGLDVEDS-------IIGKEILIDEPTI 1122
ALA +A+ S + + +G D+EDS I + ++E T+
Sbjct: 166 ALAKKALSASKQAV----------SLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTV 215
Query: 1121 XXXXXXXXXXXXXKASKKPSDDVYKVASSMAMNISKKLHKSHNQNDPLGLFLGLPETKQL 942
+ P V++ S + +K+++ ++ DPL LFL PET++L
Sbjct: 216 RSTRLLERRSKKR---RNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKL 272
Query: 941 LTVKEEKVLFAQIQDLMRLNEAKERLCADFNREPTIAEWAQAVGMSCHDLQSSLLTGIQS 762
LT KEE L QIQ+LMRL E K+RL + REPT+ EWA+AVG+SC LQS L +G +S
Sbjct: 273 LTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRS 332
Query: 761 RDRLVYANFLLVVHIARQYEGKGLSIQDLLQEGSMGLMKSLEKFKPKAGCRFPSYAYWWI 582
R +L+YAN +VVHIA+QY+G+GL++QDLLQEGSMGLM S+EKFKP AGCRF SYAYWWI
Sbjct: 333 RQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWI 392
Query: 581 RQSIRKAIFLKSRMIRLPENIYALLKTIRAARRSCIQEG-RVPTKEELARRVGITVEKLQ 405
RQ++RKAIF SR IRLPEN+Y+LL ++ A+R IQEG PTKEE+A RVGIT+EKLQ
Sbjct: 393 RQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQ 452
Query: 404 NTLALSRNPISIQERPWADQDVTLQEITADPVIETPELSVSKRMMRQHIRNLLGLLSPRE 225
L +R P+S+Q+ WADQD T QE+TAD IE P++SV+K++MRQH+RNLL +L+P+E
Sbjct: 453 RLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKE 512
Query: 224 QEIIQWRFGINNSKPMTLSEIGNVYGLSKERVRQVETHAMNKLKSYLPTQGLQAYAELL 48
+ II+ RFGI + P TLSEIG V+G SKERVRQ+E A++KLK L + GL++Y +LL
Sbjct: 513 RRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLL 571
>ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|222833385|gb|EEE71862.1|
predicted protein [Populus trichocarpa]
Length = 535
Score = 450 bits (1158), Expect = e-124
Identities = 257/582 (44%), Positives = 356/582 (61%), Gaps = 8/582 (1%)
Frame = -3
Query: 1769 MEAGRGLISSPPALNIPRNHSRSTFSTSVPVLHDQTSRAVSSMPTMSVVRHFPASVLSHE 1590
MEAGR L+SS P+ R H +++ ++SV +L +Q + AVSS+PT S +HFP SVL E
Sbjct: 1 MEAGRTLLSSSPSFPT-RTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQE 59
Query: 1589 QRDDYKTSYSV-REEKSLQ------HGESGLPFSEEKEKYNFEQYLKHFERRLLHQPGFW 1431
QRD+++ ++ +E+++ Q E G E K+ +Q +++FE +L H P +W
Sbjct: 60 QRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYW 119
Query: 1430 YLCHLAHHSEKPVTPTSVDSVTSGTNGISSIVVSPEEQNNIDSVRPEDVLALANRAMIXX 1251
L + + V P +V+ LA RA+
Sbjct: 120 NLT-----------------------------------DKLIDVEPTNVINLAKRALSAS 144
Query: 1250 XXXXXXXXXSVVLESEFNESYFIGLDVEDSIIGKEILIDEPTIXXXXXXXXXXXXXKASK 1071
+ F LD S ++E I + +
Sbjct: 145 K------------HAAFLADNNTDLDNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAP 192
Query: 1070 KPSDDVYKVASSMAMNISKKLHKSHNQNDPLGLFLGLPETKQLLTVKEEKVLFAQIQDLM 891
K D +++ S + +I K+L + + NDPL LFL PETKQLLT KEE L AQIQDLM
Sbjct: 193 KTKDLIFETYDSKSADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLM 252
Query: 890 RLNEAKERLCADFNREPTIAEWAQAVGMSCHDLQSSLLTGIQSRDRLVYANFLLVVHIAR 711
L K RL + F REPT+ EWAQAVG+SCH L+ L +G +SR++L+ AN +VVHIA+
Sbjct: 253 NLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAK 312
Query: 710 QYEGKGLSIQDLLQEGSMGLMKSLEKFKPKAGCRFPSYAYWWIRQSIRKAIFLKSRMIRL 531
+Y+ +GL +QDLLQEG++GLMKS+EKFKP+AGCRF +YAYWWIRQ+I KAIF SR IRL
Sbjct: 313 RYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRL 372
Query: 530 PENIYALLKTIRAARRSCIQEG-RVPTKEELARRVGITVEKLQNTLALSRNPISIQERPW 354
PEN+Y LL + A+RS IQEG PT EE+ARRVGI ++KL+ L +R P+S+Q+ W
Sbjct: 373 PENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVW 432
Query: 353 ADQDVTLQEITADPVIETPELSVSKRMMRQHIRNLLGLLSPREQEIIQWRFGINNSKPMT 174
+DQ+ T QEITAD IE P++SV+K++MR+HIR LL +LS +E+ II+ RFGI + K +
Sbjct: 433 SDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKS 492
Query: 173 LSEIGNVYGLSKERVRQVETHAMNKLKSYLPTQGLQAYAELL 48
LSEIGNV+GLSKERVRQ+E+ A+ KLK + + GL AYA+LL
Sbjct: 493 LSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534
>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 548
Score = 414 bits (1064), Expect = e-113
Identities = 245/586 (41%), Positives = 353/586 (60%), Gaps = 12/586 (2%)
Frame = -3
Query: 1769 MEAGRGLISSPPALNIPRNHSRSTFSTS-------VPVLHDQTSRAVSSMPTMSVVRHFP 1611
ME R +SSPP R H +++ S+S V +LH+Q AV+S PT S+ R+FP
Sbjct: 1 METARTFLSSPPPFP-SRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFP 59
Query: 1610 ASVLSHEQRDDYKTSYSV-REEKSLQ---HGESGLPFSEEKEKYNFEQYLKHFERRLLHQ 1443
SVL EQRD+++ ++ +E+K+ Q + P + ++E + ++ +LH
Sbjct: 60 TSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDV----LDQLILHS 115
Query: 1442 PGFWYLCHLAHHSEKPVTPTSVDSVTSGTNGISSIVVSPEEQNNIDSVRPEDVLALANRA 1263
W L ++ S+T+ T+ + V P +V+ LA +A
Sbjct: 116 NLSWSL--------------TMQSITTNTDELMV-------------VEPTNVIDLARKA 148
Query: 1262 MIXXXXXXXXXXXSVVLESEFNESYFIGLDVEDSIIGKEILIDEPTIXXXXXXXXXXXXX 1083
+ L+ ++ GL+ D ++E
Sbjct: 149 LSASKEAALLAQKCANLD----DTVSTGLEPTDL---SNFSLEEVKTVRSTRRLERQSKN 201
Query: 1082 KASKKPSDDVYKVASSMAMNISKKLHKSHNQNDPLGLFLGLPETKQLLTVKEEKVLFAQI 903
+ K + ++ SS + KK+++ + DPL LFL PETKQLLT KEE L Q+
Sbjct: 202 RRVTKTKEIFHEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQV 261
Query: 902 QDLMRLNEAKERLCADFNREPTIAEWAQAVGMSCHDLQSSLLTGIQSRDRLVYANFLLVV 723
QDLM L KE+ F R+PT+ EWA AVG+S +QS L +G +SR++L+ AN +VV
Sbjct: 262 QDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVV 321
Query: 722 HIARQYEGKGLSIQDLLQEGSMGLMKSLEKFKPKAGCRFPSYAYWWIRQSIRKAIFLKSR 543
HIA+QY+G+GLS+QDLLQEGSMGLMKS+EKFKP+ GCRF +YAYWWIRQ++RKAIF SR
Sbjct: 322 HIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSR 381
Query: 542 MIRLPENIYALLKTIRAARRSCIQEG-RVPTKEELARRVGITVEKLQNTLALSRNPISIQ 366
IRLPEN+Y L + A+RS I EG PTKEELA+R+GIT +L+ L ++R P+S+Q
Sbjct: 382 TIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQ 441
Query: 365 ERPWADQDVTLQEITADPVIETPELSVSKRMMRQHIRNLLGLLSPREQEIIQWRFGINNS 186
+ WADQ+ T QEITAD +E PEL V+K++MR+H+ +LL +L+PRE++II+ R+GI +
Sbjct: 442 QTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDG 501
Query: 185 KPMTLSEIGNVYGLSKERVRQVETHAMNKLKSYLPTQGLQAYAELL 48
K +LSEIG+V+GLSKERVRQ+E+ A+ KLK L + GL+AYA+LL
Sbjct: 502 KKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYADLL 547
>ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70
factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 407 bits (1046), Expect = e-111
Identities = 247/577 (42%), Positives = 345/577 (59%), Gaps = 3/577 (0%)
Frame = -3
Query: 1769 MEAGRGLISSPPALNIPRNHSRSTFSTSVPVLHDQTSR-AVSSMPTMSVVRHFPASVLSH 1593
MEA R L+SS P+ + + +SV +LH+QT+ V+S S+ RHFPASVLS
Sbjct: 1 MEATRNLVSSSPSFQTKTHLKSYSSPSSVVMLHEQTTTPVVNSRHLNSLSRHFPASVLSQ 60
Query: 1592 EQRDDYKT-SYSVREEKSLQHGESGLPFSEEKEKYNFEQYLKHFERRLLHQPGFWYLCHL 1416
E R++ + S+++RE+++ Q F E E+ FE++LLH G W L
Sbjct: 61 EPREESRPLSHALREDRTSQLTLERRQFDELVSSREDEK----FEQQLLHSAGLWNLLIS 116
Query: 1415 AHHSEKPVTPTSVDSVTSGTNGISSIVVSPEEQNNIDSVRPEDVLALANRAMIXXXXXXX 1236
+E + P VV P + D++ALA +A+
Sbjct: 117 PLTAETKLPP----------------VVPPLADAELC-----DIVALAQKAL-----SAS 150
Query: 1235 XXXXSVVLESEFNESYFIGLDVEDSIIGKEILIDEPTIXXXXXXXXXXXXXKASKKPSDD 1056
+ ++E N S + S L ++ I + + K +D
Sbjct: 151 KQAALLADDTEANPSDNTRGSLSTS--SSMSLPEKGAIVRSKRQLERRAKNRRAPKSNDV 208
Query: 1055 VYKVASSMAMNISKKLHKSHNQNDPLGLFLGLPETKQLLTVKEEKVLFAQIQDLMRLNEA 876
+ +N KK + + +D L LFL PETKQLLT KEE L + IQ L++L +
Sbjct: 209 DNEGYVPQKINAKKKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKV 268
Query: 875 KERLCADFNREPTIAEWAQAVGMSCHDLQSSLLTGIQSRDRLVYANFLLVVHIARQYEGK 696
K +L + EPTI EWA+A+G+S DL+S + G SR++L+ AN LVVHIA+QY+ +
Sbjct: 269 KTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRGRSSREKLITANLRLVVHIAKQYQNR 328
Query: 695 GLSIQDLLQEGSMGLMKSLEKFKPKAGCRFPSYAYWWIRQSIRKAIFLKSRMIRLPENIY 516
GL+ QDLLQEGSMGLMKS+EKFKP++GCRF +YAYWWIRQSIRK+IF SR IRLPEN+Y
Sbjct: 329 GLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVY 388
Query: 515 ALLKTIRAARRSCIQEGRV-PTKEELARRVGITVEKLQNTLALSRNPISIQERPWADQDV 339
LL + AR++C+QEG P+KE+LA VG++ EKL L +R P+S+Q+ W+DQD
Sbjct: 389 MLLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDT 448
Query: 338 TLQEITADPVIETPELSVSKRMMRQHIRNLLGLLSPREQEIIQWRFGINNSKPMTLSEIG 159
T QEIT D IETP +SV K+MMR H+RNLL +LSP+E+ II+ RFGI+ K +LSEIG
Sbjct: 449 TFQEITPDSGIETPTMSVGKQMMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIG 508
Query: 158 NVYGLSKERVRQVETHAMNKLKSYLPTQGLQAYAELL 48
+YGLSKERVRQ+E+ A+ +LK ++ + GL AYA+LL
Sbjct: 509 EIYGLSKERVRQLESRALYRLKQHMNSHGLHAYADLL 545