BLASTX nr result

ID: Dioscorea21_contig00008058 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00008058
         (1188 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]   288   2e-75
emb|CBI30318.3| unnamed protein product [Vitis vinifera]              286   9e-75
ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containi...   286   9e-75
ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containi...   261   2e-67
ref|XP_002323422.1| predicted protein [Populus trichocarpa] gi|2...   261   2e-67

>emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  288 bits (737), Expect = 2e-75
 Identities = 132/173 (76%), Positives = 148/173 (85%)
 Frame = +3

Query: 51   PRNSGYYVLLSNIYAKFSRWEDVAKMRELMTSMRVKKTPGWSWIEINNEIHQFRVGDKNH 230
            P+N G+Y+LLSNIYA   RWEDVAK+R+LM+  R+KK PGW+WIE++N+ HQF VGD  H
Sbjct: 1137 PQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTH 1196

Query: 231  PRSKEIYEMLKVLSEKLELAGYVPDTNFVLHDVDEELKAAYLYTHSEKLATAYGLLATPE 410
            PRSKEIYEMLK L  KLEL GYVPDTNFVLHDVDEELK   LYTHSEKLA A+GL+ATPE
Sbjct: 1197 PRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPE 1256

Query: 411  DTTIRIIKNLRVCGDCHTFMKLISAITQREIVFRDANRFHHFKEGSCSCGDYW 569
             T IRIIKNLRVCGDCHTF KL+SAIT R I+ RDANRFHHFKEG+CSCGDYW
Sbjct: 1257 HTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  208 bits (530), Expect = 2e-51
 Identities = 99/130 (76%), Positives = 111/130 (85%)
 Frame = +3

Query: 54  RNSGYYVLLSNIYAKFSRWEDVAKMRELMTSMRVKKTPGWSWIEINNEIHQFRVGDKNHP 233
           +N G+YVLLSNIYA   RWEDVAK+R+LM+  R+KKTPGW+WIE++N+ HQF VGD  HP
Sbjct: 462 QNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHP 521

Query: 234 RSKEIYEMLKVLSEKLELAGYVPDTNFVLHDVDEELKAAYLYTHSEKLATAYGLLATPED 413
           RSKEIYEMLK LS KLEL GYVPDTNFVLHDVDEELK   LYTHSEKLA A+GL+ATPE 
Sbjct: 522 RSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEH 581

Query: 414 TTIRIIKNLR 443
           T IRIIKNLR
Sbjct: 582 TPIRIIKNLR 591


>emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  286 bits (731), Expect = 9e-75
 Identities = 131/173 (75%), Positives = 147/173 (84%)
 Frame = +3

Query: 51   PRNSGYYVLLSNIYAKFSRWEDVAKMRELMTSMRVKKTPGWSWIEINNEIHQFRVGDKNH 230
            P+N G+Y+LLSNIYA   RWEDVAK R+LM+  R+KK PGW+WIE++N+ HQF VGD  H
Sbjct: 689  PQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTH 748

Query: 231  PRSKEIYEMLKVLSEKLELAGYVPDTNFVLHDVDEELKAAYLYTHSEKLATAYGLLATPE 410
            PRSKEIYEMLK L  KLEL GYVPDTNFVLHDVDEELK   LY+HSEKLA A+GL+ATPE
Sbjct: 749  PRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPE 808

Query: 411  DTTIRIIKNLRVCGDCHTFMKLISAITQREIVFRDANRFHHFKEGSCSCGDYW 569
             T IRIIKNLRVCGDCHTF KL+SAIT R I+ RDANRFHHFKEG+CSCGDYW
Sbjct: 809  HTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861


>ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like
            [Vitis vinifera]
          Length = 705

 Score =  286 bits (731), Expect = 9e-75
 Identities = 131/173 (75%), Positives = 147/173 (84%)
 Frame = +3

Query: 51   PRNSGYYVLLSNIYAKFSRWEDVAKMRELMTSMRVKKTPGWSWIEINNEIHQFRVGDKNH 230
            P+N G+Y+LLSNIYA   RWEDVAK R+LM+  R+KK PGW+WIE++N+ HQF VGD  H
Sbjct: 533  PQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTH 592

Query: 231  PRSKEIYEMLKVLSEKLELAGYVPDTNFVLHDVDEELKAAYLYTHSEKLATAYGLLATPE 410
            PRSKEIYEMLK L  KLEL GYVPDTNFVLHDVDEELK   LY+HSEKLA A+GL+ATPE
Sbjct: 593  PRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPE 652

Query: 411  DTTIRIIKNLRVCGDCHTFMKLISAITQREIVFRDANRFHHFKEGSCSCGDYW 569
             T IRIIKNLRVCGDCHTF KL+SAIT R I+ RDANRFHHFKEG+CSCGDYW
Sbjct: 653  HTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705


>ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  261 bits (668), Expect = 2e-67
 Identities = 116/173 (67%), Positives = 145/173 (83%)
 Frame = +3

Query: 51  PRNSGYYVLLSNIYAKFSRWEDVAKMRELMTSMRVKKTPGWSWIEINNEIHQFRVGDKNH 230
           P+N G+YVLLSNIYAK  +WE VAK R++MT  ++KK PGW+WIE++N+ +QF VGD++H
Sbjct: 401 PQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSH 460

Query: 231 PRSKEIYEMLKVLSEKLELAGYVPDTNFVLHDVDEELKAAYLYTHSEKLATAYGLLATPE 410
           P+SKEIYEML  L +KLE+AGYVPDT+FVL DV+EE+K   LYTHSEKLA A+GL+A PE
Sbjct: 461 PQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPE 520

Query: 411 DTTIRIIKNLRVCGDCHTFMKLISAITQREIVFRDANRFHHFKEGSCSCGDYW 569
              IRI KNLRVCGDCHTF K++S+I +R I+ RDANRFHHF +G+CSCGDYW
Sbjct: 521 GEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573


>ref|XP_002323422.1| predicted protein [Populus trichocarpa] gi|222868052|gb|EEF05183.1|
           predicted protein [Populus trichocarpa]
          Length = 574

 Score =  261 bits (667), Expect = 2e-67
 Identities = 120/172 (69%), Positives = 143/172 (83%)
 Frame = +3

Query: 54  RNSGYYVLLSNIYAKFSRWEDVAKMRELMTSMRVKKTPGWSWIEINNEIHQFRVGDKNHP 233
           +N G+Y+LLSNIYA   RW+DVAK+R LM   R+KK PG++WIE++N I++F  GD +H 
Sbjct: 403 QNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHL 462

Query: 234 RSKEIYEMLKVLSEKLELAGYVPDTNFVLHDVDEELKAAYLYTHSEKLATAYGLLATPED 413
           RS EIYEMLK LS+KLE AGYVPDTN VLHDVDEE+K   L+ HSEKLA A+GL+ATP+ 
Sbjct: 463 RSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDG 522

Query: 414 TTIRIIKNLRVCGDCHTFMKLISAITQREIVFRDANRFHHFKEGSCSCGDYW 569
           T IRI KNLRVCGDCH+F KL+SAITQR+I+ RDANRFHHFKEG CSCGDYW
Sbjct: 523 TPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574


Top