BLASTX nr result

ID: Dioscorea21_contig00005976 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00005976
         (496 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276495.1| PREDICTED: uncharacterized protein LOC100265...    69   5e-10
ref|NP_193739.1| integrator complex subunit 7 [Arabidopsis thali...    57   1e-06

>ref|XP_002276495.1| PREDICTED: uncharacterized protein LOC100265170 [Vitis vinifera]
            gi|296082233|emb|CBI21238.3| unnamed protein product
            [Vitis vinifera]
          Length = 1166

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 2/167 (1%)
 Frame = +2

Query: 2    VMPNISDLVDRFANISSRLNKLAKAYDTLATSFLDIDFSSVGNMLRFALNCXXXXXXXXX 181
            ++     L  + + +S +L +LA+ +D +ATSF+ +D  S   +   AL+C         
Sbjct: 779  ILVEYPQLSQQISQVSFQLKRLAQEFDLMATSFIGMDSKSSKIISALALSCSILAFITGF 838

Query: 182  XXXXXXXPSFESIISYSSQKLENHPPTVLLQDLVDRLWGIDDNIVLVLQQFMVGSGE--L 355
                   P  +++ + S + L     +VL+QDL+ RLW +D  ++  L   +  SG+   
Sbjct: 839  TLYFPEIPVNKNVTTCSLEGLGRFSHSVLIQDLIGRLWHMDHEMIANLCLLLKASGQPKS 898

Query: 356  TCYPQSRTQINKSDHKNQGSLLISSFAVCNILKIHEDAKKVKDDEDL 496
             C+ QS  QI  S    +  L +  +AV  ++ +  +A K  ++EDL
Sbjct: 899  CCHLQSGNQIWSSGCGVKDVLTVCRYAVTRVVHLQNEANKGHNEEDL 945


>ref|NP_193739.1| integrator complex subunit 7 [Arabidopsis thaliana]
            gi|2827660|emb|CAA16614.1| hypothetical protein
            [Arabidopsis thaliana] gi|7268801|emb|CAB79006.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332658868|gb|AEE84268.1| integrator complex subunit 7
            [Arabidopsis thaliana]
          Length = 1134

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
 Frame = +2

Query: 20   DLVDRFANISSRLNKLAKAYDTLATSFLDIDFSSVGNMLRFALNCXXXXXXXXXXXXXXX 199
            D + +   IS +L KLAK +D LAT F+DID SS   +   +L+C               
Sbjct: 764  DSLQQLPRISIQLQKLAKEFDMLATCFIDIDDSSSSIITTISLSCSVLAFAAGIVLFLPG 823

Query: 200  XPSFESIISYSSQKLENHPPTVLLQDLVDRLWGIDDNIVLVLQQFMVGSGELTCYP-QSR 376
                E+++ ++SQ   +   + L++DLV RLW +D N+   L   +  +  L C+  QSR
Sbjct: 824  FSFQEALVPFTSQ---SGLCSRLVEDLVRRLWKVDPNVCEKLNILVNTNESLNCFHLQSR 880

Query: 377  TQI 385
             Q+
Sbjct: 881  NQV 883


Top