BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00005859
         (1222 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|2...   499   e-139
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   498   e-138
ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II su...   489   e-136
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   489   e-136
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   489   e-136

>ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|222850273|gb|EEE87820.1|
            predicted protein [Populus trichocarpa]
          Length = 346

 Score =  499 bits (1286), Expect = e-139
 Identities = 252/317 (79%), Positives = 280/317 (88%), Gaps = 4/317 (1%)
 Frame = -2

Query: 1170 ISYQRFPKIRIREMKDDYLKFDLTDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 991
            +SYQRFPKI+IREMKDDYLKF+L +TDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN
Sbjct: 4    VSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63

Query: 990  DEFIAHRLGLIPLTSDFAMGMRFSRDCDSCDGDGQCEYCSVEFHLNVRCDSDQTLDVTSA 811
            DEFIAHRLGLIPLTS+ AMGMRFSRDCD+CDGDGQCEYCSVEFHL  +C +DQTLDVTS 
Sbjct: 64   DEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDVTSK 123

Query: 810  DLRSTDPHVVPVDVAARALSTDPASFDSDQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 631
            DL S+D  V+PVD +  + + DP      QRGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 124  DLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 183

Query: 630  WSPAATVTFMYEPDIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVMVVDPEAYT 451
            WSPAATVTFMYEP+IHINEDLMETLTLEEK +W+ESSPTKVFDID  TQQV+VVDPEAYT
Sbjct: 184  WSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPEAYT 243

Query: 450  YDEEVIKKAEAMGKPGLVEIYAKEDSFIFAVESTGAIKASQLVINAIDVLRQKLDAVRMQ 271
            YD+EVIKKAEAMGK GL++I AKEDSFIF VESTGA+KASQLV+NAI++L+QKLDAVR+ 
Sbjct: 244  YDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLS 303

Query: 270  D----AEADFKEFSEHL 232
            D    A+  F E   H+
Sbjct: 304  DDTVEADDQFGELGVHM 320


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  498 bits (1281), Expect = e-138
 Identities = 253/317 (79%), Positives = 282/317 (88%), Gaps = 5/317 (1%)
 Frame = -2

Query: 1167 SYQRFPKIRIREMKDDYLKFDLTDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 988
            SYQRFP+I+IRE+KDDY KF+L DTDASMANALRRVMIAEVPT+AIDLVEIEVNSSVLND
Sbjct: 5    SYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 64

Query: 987  EFIAHRLGLIPLTSDFAMGMRFSRDCDSCDGDGQCEYCSVEFHLNVRCDSDQTLDVTSAD 808
            EFIAHRLGLIPLTS+ AM MRFSRDCD+CDGDGQC+YCSVEFHL  +C +DQTLDVTS D
Sbjct: 65   EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKD 124

Query: 807  LRSTDPHVVPVDVAARALSTDPASFDS-DQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 631
            L S+D  VVPVD +      D + +DS +QRGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 125  LYSSDHTVVPVDFS------DSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 178

Query: 630  WSPAATVTFMYEPDIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVMVVDPEAYT 451
            WSPAATVTFMYEPDIHINEDLME+L+LEEK++WVESSPTKVFDIDPNTQQV+VVDPEAYT
Sbjct: 179  WSPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYT 238

Query: 450  YDEEVIKKAEAMGKPGLVEIYAKEDSFIFAVESTGAIKASQLVINAIDVLRQKLDAVRMQ 271
            YDEEVIKKAE+MGKPGLV I AKEDSFIF VESTGAIKASQLV+NAI++L+QKLDAVR+ 
Sbjct: 239  YDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLS 298

Query: 270  ----DAEADFKEFSEHL 232
                +A+  F E   H+
Sbjct: 299  EDTVEADDQFGELGAHM 315


>ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Brachypodium distachyon]
          Length = 330

 Score =  489 bits (1260), Expect = e-136
 Identities = 253/322 (78%), Positives = 280/322 (86%), Gaps = 7/322 (2%)
 Frame = -2

Query: 1170 ISYQRFPKIRIREMKDDYLKFDLTDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 991
            +SYQRFP++RIRE+KDDY KF+L DTDASMANALRRVMIAEVPT+AIDLVEIE NSSVLN
Sbjct: 8    VSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLN 67

Query: 990  DEFIAHRLGLIPLTSDFAMGMRFSRDCDSCDGDGQCEYCSVEFHLNVRC-DSDQTLDVTS 814
            DEFIAHRLGLIPLTS  AMGMRFSRDCD+CDGDG CE+CSVEFHL  R  D+++TL+VTS
Sbjct: 68   DEFIAHRLGLIPLTSSGAMGMRFSRDCDACDGDGSCEHCSVEFHLAARATDANKTLEVTS 127

Query: 813  ADLRSTDPHVVPVDVAA---RALST-DP--ASFDSDQRGIIIVKLRRGQELRLRAIARKG 652
             DLRSTDP V PVD A    +A+ T DP   S  SD RGI+IVKLRRGQELRLRAIARKG
Sbjct: 128  NDLRSTDPKVCPVDQAMAYQQAIGTADPYDTSTASDHRGILIVKLRRGQELRLRAIARKG 187

Query: 651  IGKDHAKWSPAATVTFMYEPDIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVMV 472
            I KDHAKWSPAATVTFMYEPDI INE+LMETLTLEEK +WVESSPTKVFDIDPNTQQV+V
Sbjct: 188  IAKDHAKWSPAATVTFMYEPDIRINEELMETLTLEEKTSWVESSPTKVFDIDPNTQQVVV 247

Query: 471  VDPEAYTYDEEVIKKAEAMGKPGLVEIYAKEDSFIFAVESTGAIKASQLVINAIDVLRQK 292
            VD EAYTYD+EVIKKAEAMGKPGL+EI AKEDSF+F VE+TGAI A +L+INAI VLRQK
Sbjct: 248  VDREAYTYDDEVIKKAEAMGKPGLIEISAKEDSFVFTVETTGAITAYELIINAITVLRQK 307

Query: 291  LDAVRMQDAEADFKEFSEHLGV 226
            LDAVR+Q+ + DF     HLGV
Sbjct: 308  LDAVRLQEEDGDFTGLDAHLGV 329


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  489 bits (1259), Expect = e-136
 Identities = 249/318 (78%), Positives = 281/318 (88%), Gaps = 5/318 (1%)
 Frame = -2

Query: 1170 ISYQRFPKIRIREMKDDYLKFDLTDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 991
            +SYQRFPKI+IRE+KDDY KF+L +TDASMANALRRVMIAEVPT+AIDLVEIEVNSSVLN
Sbjct: 4    VSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLN 63

Query: 990  DEFIAHRLGLIPLTSDFAMGMRFSRDCDSCDGDGQCEYCSVEFHLNVRCDSDQTLDVTSA 811
            DEFIAHRLGLIPLTS+ AM MRFSRDCD+CDGDGQCE+CSVEFHL  +C +D+TLDVTS 
Sbjct: 64   DEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSK 123

Query: 810  DLRSTDPHVVPVDVAARALSTDPASFDS-DQRGIIIVKLRRGQELRLRAIARKGIGKDHA 634
            DL S+D  VVPVD +      D + +DS D++GIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 124  DLISSDHTVVPVDFS------DSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 633  KWSPAATVTFMYEPDIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVMVVDPEAY 454
            KWSPAATVTFMYEP+IHINEDLME+LTLEEK +WVESSPTKVFDID ++QQV+V D EAY
Sbjct: 178  KWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAY 237

Query: 453  TYDEEVIKKAEAMGKPGLVEIYAKEDSFIFAVESTGAIKASQLVINAIDVLRQKLDAVRM 274
            TYD+EV+KKAEAMGKPGLVEIYAKEDSFIF VESTGAIKASQLV+NAIDVL+QKLDAVR+
Sbjct: 238  TYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRL 297

Query: 273  Q----DAEADFKEFSEHL 232
                 +A+  F E   H+
Sbjct: 298  SEDTVEADDQFGELGAHM 315


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  489 bits (1259), Expect = e-136
 Identities = 249/318 (78%), Positives = 281/318 (88%), Gaps = 5/318 (1%)
 Frame = -2

Query: 1170 ISYQRFPKIRIREMKDDYLKFDLTDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 991
            +SYQRFPKI+IRE+KDDY KF+L +TDASMANALRRVMIAEVPT+AIDLVEIEVNSSVLN
Sbjct: 4    VSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLN 63

Query: 990  DEFIAHRLGLIPLTSDFAMGMRFSRDCDSCDGDGQCEYCSVEFHLNVRCDSDQTLDVTSA 811
            DEFIAHRLGLIPLTS+ AM MRFSRDCD+CDGDGQCE+CSVEFHL  +C +D+TLDVTS 
Sbjct: 64   DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSK 123

Query: 810  DLRSTDPHVVPVDVAARALSTDPASFDS-DQRGIIIVKLRRGQELRLRAIARKGIGKDHA 634
            DL S+D  VVPVD +      D + +DS D++GIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 124  DLISSDHTVVPVDFS------DSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHA 177

Query: 633  KWSPAATVTFMYEPDIHINEDLMETLTLEEKRNWVESSPTKVFDIDPNTQQVMVVDPEAY 454
            KWSPAATVTFMYEP+IHINEDLME+LTLEEK +WVESSPTKVFDID ++QQV+V D EAY
Sbjct: 178  KWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAY 237

Query: 453  TYDEEVIKKAEAMGKPGLVEIYAKEDSFIFAVESTGAIKASQLVINAIDVLRQKLDAVRM 274
            TYD+EV+KKAEAMGKPGLVEIYAKEDSFIF VESTGAIKASQLV+NAIDVL+QKLDAVR+
Sbjct: 238  TYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRL 297

Query: 273  Q----DAEADFKEFSEHL 232
                 +A+  F E   H+
Sbjct: 298  SEDTVEADDQFGELGAHM 315