BLASTX nr result

ID: Dioscorea21_contig00005485 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00005485
         (220 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL15890.1|AF417302_1 26S proteasome regulatory subunit S12 i...   121   5e-26
ref|XP_002315172.1| predicted protein [Populus trichocarpa] gi|1...   117   1e-24
ref|XP_002279347.1| PREDICTED: eukaryotic translation initiation...   114   6e-24
emb|CAN80292.1| hypothetical protein VITISV_032012 [Vitis vinifera]   114   6e-24
ref|XP_004138431.1| PREDICTED: eukaryotic translation initiation...   113   1e-23

>gb|AAL15890.1|AF417302_1 26S proteasome regulatory subunit S12 isolog-like protein [Castanea
           sativa]
          Length = 197

 Score =  121 bits (304), Expect = 5e-26
 Identities = 59/72 (81%), Positives = 66/72 (91%)
 Frame = -3

Query: 218 DILKTTMVDKLPNDLEGMEASMERLLALIDDVYKYVDGVVEGNVAPDNNNGRLISDALSS 39
           DILKTTMVDKLPNDLEGMEASMERLLALIDDVYKYVD VVEG+VAPDN+ GR IS+ +SS
Sbjct: 103 DILKTTMVDKLPNDLEGMEASMERLLALIDDVYKYVDNVVEGHVAPDNSIGRFISETVSS 162

Query: 38  IPKMSPAVFDKV 3
           +PK+SP  FDK+
Sbjct: 163 LPKLSPPAFDKL 174


>ref|XP_002315172.1| predicted protein [Populus trichocarpa] gi|118484603|gb|ABK94175.1|
           unknown [Populus trichocarpa]
           gi|222864212|gb|EEF01343.1| predicted protein [Populus
           trichocarpa]
          Length = 287

 Score =  117 bits (293), Expect = 1e-24
 Identities = 55/72 (76%), Positives = 65/72 (90%)
 Frame = -3

Query: 218 DILKTTMVDKLPNDLEGMEASMERLLALIDDVYKYVDGVVEGNVAPDNNNGRLISDALSS 39
           D+LKTTMVDK+P+DLEGME SM+RLLALIDDVYKYVD VVEG+ APDNN GR ISD ++S
Sbjct: 181 DVLKTTMVDKIPSDLEGMEISMQRLLALIDDVYKYVDDVVEGHTAPDNNIGRFISDTVAS 240

Query: 38  IPKMSPAVFDKV 3
           +PK+SP VFDK+
Sbjct: 241 LPKLSPPVFDKL 252


>ref|XP_002279347.1| PREDICTED: eukaryotic translation initiation factor 3 subunit F
           [Vitis vinifera] gi|296086088|emb|CBI31529.3| unnamed
           protein product [Vitis vinifera]
          Length = 285

 Score =  114 bits (286), Expect = 6e-24
 Identities = 55/72 (76%), Positives = 64/72 (88%)
 Frame = -3

Query: 218 DILKTTMVDKLPNDLEGMEASMERLLALIDDVYKYVDGVVEGNVAPDNNNGRLISDALSS 39
           DILKTTMV+KLP+DLEGMEASMERLLALIDDVYKYVD VVEG V PDN+ GR I+D ++S
Sbjct: 179 DILKTTMVEKLPSDLEGMEASMERLLALIDDVYKYVDSVVEGQVVPDNDIGRFIADTVAS 238

Query: 38  IPKMSPAVFDKV 3
           IPK+SP  FD++
Sbjct: 239 IPKISPPAFDRL 250


>emb|CAN80292.1| hypothetical protein VITISV_032012 [Vitis vinifera]
          Length = 354

 Score =  114 bits (286), Expect = 6e-24
 Identities = 55/72 (76%), Positives = 64/72 (88%)
 Frame = -3

Query: 218 DILKTTMVDKLPNDLEGMEASMERLLALIDDVYKYVDGVVEGNVAPDNNNGRLISDALSS 39
           DILKTTMV+KLP+DLEGMEASMERLLALIDDVYKYVD VVEG V PDN+ GR I+D ++S
Sbjct: 248 DILKTTMVEKLPSDLEGMEASMERLLALIDDVYKYVDSVVEGQVVPDNDIGRFIADTVAS 307

Query: 38  IPKMSPAVFDKV 3
           IPK+SP  FD++
Sbjct: 308 IPKISPPAFDRL 319


>ref|XP_004138431.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           F-like [Cucumis sativus]
           gi|449517876|ref|XP_004165970.1| PREDICTED: eukaryotic
           translation initiation factor 3 subunit F-like [Cucumis
           sativus]
          Length = 285

 Score =  113 bits (283), Expect = 1e-23
 Identities = 53/72 (73%), Positives = 63/72 (87%)
 Frame = -3

Query: 218 DILKTTMVDKLPNDLEGMEASMERLLALIDDVYKYVDGVVEGNVAPDNNNGRLISDALSS 39
           DILKTT +DKLPNDLEGMEASMERLLALIDD+YKYVD VVEG+V  DN  GR ++D ++S
Sbjct: 179 DILKTTSIDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVAS 238

Query: 38  IPKMSPAVFDKV 3
           +PK+SPA FDK+
Sbjct: 239 LPKLSPAAFDKL 250


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