BLASTX nr result
ID: Dioscorea21_contig00004796
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00004796
(1040 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containi... 397 e-108
ref|XP_002520332.1| pentatricopeptide repeat-containing protein,... 390 e-106
ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containi... 372 e-100
ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. l... 365 1e-98
ref|NP_177865.2| pentatricopeptide repeat-containing protein [Ar... 365 1e-98
>ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like
[Vitis vinifera]
Length = 432
Score = 397 bits (1021), Expect = e-108
Identities = 198/317 (62%), Positives = 237/317 (74%), Gaps = 7/317 (2%)
Frame = +2
Query: 110 TLVLQVMAAMLQLRPFSTSLSPSPRFPGWTTNSILSILAAIPSFFFLSTRSIGRQPTTRH 289
+LV QV+AAM+Q P S + S P WTT+S+ +L +IP FF S RSIGRQ RH
Sbjct: 13 SLVKQVLAAMVQNCPLDASPNKSCNQP-WTTDSVSEVLRSIPRLFFQSPRSIGRQKGFRH 71
Query: 290 RSPLKPRPLRLHTLAVHR--DPSRIHLGVSQALAFYSWVESHCGFIHNESTCRAMCRILA 463
RSPLK R L HR DP ++ LGV +A+ FYSWVE+ GF HNE TCR M +LA
Sbjct: 72 RSPLKQRNLYQEPNKFHRYRDPHKVKLGVEKAMEFYSWVETQFGFSHNEMTCREMGCVLA 131
Query: 464 KSNNLRILWRFL-----RSNQTLVXXXXXXXXXKVLGDEGLAKEALAAFYRMKQLHCKPD 628
+ N L++LW FL + +V KVLG+EGLA +ALAAFYRMKQ HCKPD
Sbjct: 132 RGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLGEEGLANQALAAFYRMKQFHCKPD 191
Query: 629 VIAYNTLISALCRIGDFKNARSLLEQMELPGARCSPDTYTYTILIGYYCRRSMETGCRKA 808
V AYNT+I ALCR+G+F+ AR LLEQMELPG RC PD++TYTILIG YC+ S++TGCRKA
Sbjct: 192 VYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPPDSFTYTILIGSYCKYSLQTGCRKA 251
Query: 809 IRRRIWEANHMFRRMLFKGFVPDVVTYNCLINGLCKSYRIERAREVFDEMLQRGCVPNRV 988
+RRR+WEANH+FR MLFKGFVPDVVTYNCLI+G CK+YRIERA E+FD+M +RGCVPNRV
Sbjct: 252 VRRRLWEANHLFRIMLFKGFVPDVVTYNCLIDGCCKTYRIERALELFDDMNKRGCVPNRV 311
Query: 989 TYNSFIRYYSVVNEVDK 1039
TYNSFIRYYS VNE+DK
Sbjct: 312 TYNSFIRYYSAVNEIDK 328
>ref|XP_002520332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540551|gb|EEF42118.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 441
Score = 390 bits (1002), Expect = e-106
Identities = 195/328 (59%), Positives = 238/328 (72%), Gaps = 19/328 (5%)
Frame = +2
Query: 113 LVLQVMAAMLQLRPFSTSLSPSPRFPGWTTNSILSILAAIPSFFFLSTRSIGRQPTTRHR 292
L+ QV++ M+Q RPF L+ S ++N I +L +IP FFF STRS+GRQ TTRHR
Sbjct: 10 LINQVISLMIQHRPFDIQLASSTTTSLLSSNLISDVLRSIPRFFFQSTRSVGRQSTTRHR 69
Query: 293 SPLKPRPLRLHTL-----------AVHRDPSRIHLGVSQALAFYSWVESHCGFIHNESTC 439
SPLK R L+ T A ++DP R+ LGV +A+ F+ WVE++C FIH ESTC
Sbjct: 70 SPLKQRSLKQETHKHNNKLLILGPAAYKDPKRVKLGVFKAMEFFYWVETNCDFIHTESTC 129
Query: 440 RAMCRILAKSNNLRILWRFLRS--------NQTLVXXXXXXXXXKVLGDEGLAKEALAAF 595
R M +LA++N L LW FL+ + LV KVLG+EGL KEAL+ F
Sbjct: 130 REMGFVLARANRLDKLWNFLQEMAKREVFDGRKLVTTNAVTCLIKVLGEEGLVKEALSLF 189
Query: 596 YRMKQLHCKPDVIAYNTLISALCRIGDFKNARSLLEQMELPGARCSPDTYTYTILIGYYC 775
YRMK+ HCKPDV AYNT+I ALCRIG+FK AR LLEQMELPG C PDT+TYTI+I YC
Sbjct: 190 YRMKKYHCKPDVYAYNTIIYALCRIGNFKKARYLLEQMELPGFYCPPDTFTYTIMISSYC 249
Query: 776 RRSMETGCRKAIRRRIWEANHMFRRMLFKGFVPDVVTYNCLINGLCKSYRIERAREVFDE 955
+ S++TGCRKAIRRR+WEANH+FR MLFKGF PDVVTYNCLI+G CK+YRIERA E+F++
Sbjct: 250 KYSLQTGCRKAIRRRLWEANHLFRIMLFKGFAPDVVTYNCLIDGCCKTYRIERALELFED 309
Query: 956 MLQRGCVPNRVTYNSFIRYYSVVNEVDK 1039
M +RGCVPNRVTYNSFIRYYS VNE+DK
Sbjct: 310 MNRRGCVPNRVTYNSFIRYYSAVNEIDK 337
>ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like
[Cucumis sativus] gi|449518241|ref|XP_004166151.1|
PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Cucumis sativus]
Length = 445
Score = 372 bits (954), Expect = e-100
Identities = 188/329 (57%), Positives = 230/329 (69%), Gaps = 20/329 (6%)
Frame = +2
Query: 113 LVLQVMAAMLQLRPFSTSL----SPSPRFPGWTTNSILSILAAIPSFFFLSTRSIGRQPT 280
LV Q++ AML+ RPF T + S S W+++S+ +L ++P FFF S RSIG Q
Sbjct: 14 LVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRFFFQSARSIGTQKG 73
Query: 281 TRHRSPLKPRPLRLHTL-----------AVHRDPSRIHLGVSQALAFYSWVESHCGFIHN 427
RHR+PLK R L+ HRDP + LG+++AL F+ WVE+H GF H+
Sbjct: 74 FRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEFFYWVETHFGFQHD 133
Query: 428 ESTCRAMCRILAKSNNLRILWRFL-----RSNQTLVXXXXXXXXXKVLGDEGLAKEALAA 592
E TCR M +LA+ N L LW FL R N LV KVLG+EGL EAL A
Sbjct: 134 EITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKVLGEEGLVNEALTA 193
Query: 593 FYRMKQLHCKPDVIAYNTLISALCRIGDFKNARSLLEQMELPGARCSPDTYTYTILIGYY 772
FYRMKQ HCKPDV AYNT+I+ LCRIG+FK AR LLEQMELPG RC PD +TYTILI Y
Sbjct: 194 FYRMKQFHCKPDVYAYNTVINVLCRIGNFKKARFLLEQMELPGFRCPPDIFTYTILISSY 253
Query: 773 CRRSMETGCRKAIRRRIWEANHMFRRMLFKGFVPDVVTYNCLINGLCKSYRIERAREVFD 952
C+ S++TGCRKAIRRR+WEANH+FR MLFKGF PDVVTYN LI+G CK+YRI+RA E+F+
Sbjct: 254 CKYSLQTGCRKAIRRRLWEANHLFRIMLFKGFSPDVVTYNSLIDGCCKTYRIQRALELFE 313
Query: 953 EMLQRGCVPNRVTYNSFIRYYSVVNEVDK 1039
+M +RGC PNR+TYNSFIRYYS VNE+D+
Sbjct: 314 DMSKRGCTPNRLTYNSFIRYYSAVNEIDQ 342
>ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 459
Score = 365 bits (937), Expect = 1e-98
Identities = 185/325 (56%), Positives = 228/325 (70%), Gaps = 17/325 (5%)
Frame = +2
Query: 113 LVLQVMAAMLQLRPFSTSLSPSPRFPGWTTNSILSILAAIPSFFFLSTRSIGRQPTTRHR 292
++ Q++AAM+Q RPF L+ S WT + +L +IP FFF+S RSIGRQ RHR
Sbjct: 11 IIDQLIAAMIQNRPFDAVLASSTVANPWTQQLVSDVLRSIPRFFFISPRSIGRQKGFRHR 70
Query: 293 SPLKPRPL-------RLHTLAV----HRDPSRIHLGVSQALAFYSWVESHCGFIHNESTC 439
SPLK R L R L + + DP +I LG+ +AL F+ W+E H GF HNE TC
Sbjct: 71 SPLKQRNLSDESQRRRSEVLVLGPGAYIDPKKISLGLQKALEFFFWIEIHFGFGHNEITC 130
Query: 440 RAMCRILAKSNNLRILWRFLR------SNQTLVXXXXXXXXXKVLGDEGLAKEALAAFYR 601
R M +LAK N+ + LW FLR + + +V K LG+EG KEALA FYR
Sbjct: 131 RDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCLGEEGFVKEALATFYR 190
Query: 602 MKQLHCKPDVIAYNTLISALCRIGDFKNARSLLEQMELPGARCSPDTYTYTILIGYYCRR 781
MK+ HCKPDV AYNT+I+ALCR+G+FK AR LL+QM+LPG R PDTYTYTILI YCR
Sbjct: 191 MKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRY 250
Query: 782 SMETGCRKAIRRRIWEANHMFRRMLFKGFVPDVVTYNCLINGLCKSYRIERAREVFDEML 961
M+TGCRKAIRRR+WEAN MFR MLF+GFVPDVVTYNCLI+G CK+ RI RA E+F++M
Sbjct: 251 GMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMK 310
Query: 962 QRGCVPNRVTYNSFIRYYSVVNEVD 1036
+GCVPN+VTYNSFIRYYSV NE++
Sbjct: 311 TKGCVPNQVTYNSFIRYYSVTNEIE 335
>ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g77405 gi|91806103|gb|ABE65780.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
gi|332197853|gb|AEE35974.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 458
Score = 365 bits (937), Expect = 1e-98
Identities = 183/325 (56%), Positives = 228/325 (70%), Gaps = 17/325 (5%)
Frame = +2
Query: 113 LVLQVMAAMLQLRPFSTSLSPSPRFPGWTTNSILSILAAIPSFFFLSTRSIGRQPTTRHR 292
+V Q++ AM+Q RPF L+ S WT + +L +IP FFF+S RSIGRQ RHR
Sbjct: 11 IVDQLITAMIQNRPFDAVLASSTVAKPWTQQLVSDVLHSIPRFFFISPRSIGRQKGFRHR 70
Query: 293 SPLKPRPL-------RLHTLAV----HRDPSRIHLGVSQALAFYSWVESHCGFIHNESTC 439
SPLK R L R L + + DP ++ +G+ +AL F+ W+E+H GF HNE TC
Sbjct: 71 SPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIETHFGFDHNEITC 130
Query: 440 RAMCRILAKSNNLRILWRFLR------SNQTLVXXXXXXXXXKVLGDEGLAKEALAAFYR 601
R M +LAK N+ + LW FLR + + +V K LG+EG KEALA FYR
Sbjct: 131 RDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCLGEEGFVKEALATFYR 190
Query: 602 MKQLHCKPDVIAYNTLISALCRIGDFKNARSLLEQMELPGARCSPDTYTYTILIGYYCRR 781
MK+ HCKPDV AYNT+I+ALCR+G+FK AR LL+QM+LPG R PDTYTYTILI YCR
Sbjct: 191 MKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRY 250
Query: 782 SMETGCRKAIRRRIWEANHMFRRMLFKGFVPDVVTYNCLINGLCKSYRIERAREVFDEML 961
M+TGCRKAIRRR+WEAN MFR MLF+GFVPDVVTYNCLI+G CK+ RI RA E+F++M
Sbjct: 251 GMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMK 310
Query: 962 QRGCVPNRVTYNSFIRYYSVVNEVD 1036
+GCVPN+VTYNSFIRYYSV NE++
Sbjct: 311 TKGCVPNQVTYNSFIRYYSVTNEIE 335