BLASTX nr result
ID: Dioscorea21_contig00004596
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00004596
(1029 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272224.1| PREDICTED: KH domain-containing protein At4g... 341 2e-91
ref|XP_003526723.1| PREDICTED: KH domain-containing protein At4g... 340 4e-91
ref|XP_003523354.1| PREDICTED: KH domain-containing protein At4g... 337 3e-90
ref|XP_002521934.1| nucleic acid binding protein, putative [Rici... 329 8e-88
ref|XP_002317787.1| predicted protein [Populus trichocarpa] gi|2... 329 8e-88
>ref|XP_002272224.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 661
Score = 341 bits (874), Expect = 2e-91
Identities = 182/323 (56%), Positives = 226/323 (69%), Gaps = 5/323 (1%)
Frame = +1
Query: 76 FRILCPEIRATAVVGKSGNSIKLIRQKTGSWITVHEIIHGDNERIIETSDSMRRDPDGRP 255
+RILC +++A V+GKSG+ IK IRQ TG+WI VHE+I GD ERIIE SD+ RRDP+GR
Sbjct: 69 YRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 128
Query: 256 PQFSPAQDALILIHERIV--DTXXXXXXXXXXXXXXXXXXRSGRGRITTRLVVPRSHVGC 429
PQFSPAQ+AL +IH+RI+ D R G R+ TR+VV R HVGC
Sbjct: 129 PQFSPAQEALFMIHDRILESDAGFGNGFGGNGDDDDDFGPRGGGNRVATRMVVSRMHVGC 188
Query: 430 LLGKGGKIIEQMRMETKTHIRILPRDQYTPQCVSPSEEVVQVVGEGICVKKAVEIISSRL 609
LLGKGGKIIEQMR+ETKT IRILPRD P+CVS SEE+VQVVG+ VK A+ ISSRL
Sbjct: 189 LLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIANISSRL 248
Query: 610 LESLHRDRGPFRGRLH-SPEQYFPHDDDF--MNNAQSQSAPEGFDVGSRSSTGANRARNK 780
ES HRDR F GR+ SPE++FP DDD+ MNNA + +G GSR STG R+
Sbjct: 249 RESQHRDRSHFHGRIQSSPERFFPPDDDYSHMNNAPRRMPIDGNSFGSRVSTGLVGTRSN 308
Query: 781 LHSSNSSRFAFDSDGNQAVDNSQSLSSDDIIFRILCPNEKVENVMGVSDGIIEMLRSDIG 960
+S +S + +S DN+Q +DI+FRILCP +KVE V+G SDGIIE+L+++IG
Sbjct: 309 SFASRTSGYTLESGAAPIADNAQQFLGEDIVFRILCPVDKVECVVGESDGIIELLQNEIG 368
Query: 961 VDVKVCDPVPGSDERVIVITSEE 1029
VDVKV D V GS+E++IVITSEE
Sbjct: 369 VDVKVADHVAGSNEQIIVITSEE 391
Score = 89.7 bits (221), Expect = 1e-15
Identities = 63/189 (33%), Positives = 100/189 (52%)
Frame = +1
Query: 73 VFRILCPEIRATAVVGKSGNSIKLIRQKTGSWITVHEIIHGDNERIIETSDSMRRDPDGR 252
VFRILCP + VVG+S I+L++ + G + V + + G NE+II + +G
Sbjct: 339 VFRILCPVDKVECVVGESDGIIELLQNEIGVDVKVADHVAGSNEQIIVITSE-----EGP 393
Query: 253 PPQFSPAQDALILIHERIVDTXXXXXXXXXXXXXXXXXXRSGRGRITTRLVVPRSHVGCL 432
+ PAQ+AL+ I RIV+ ITTRL+VP S +GC
Sbjct: 394 DDELFPAQEALLHIQTRIVNLLP-----------------DKENVITTRLLVPSSEIGCF 436
Query: 433 LGKGGKIIEQMRMETKTHIRILPRDQYTPQCVSPSEEVVQVVGEGICVKKAVEIISSRLL 612
G+ + E MR T +I+I+PR+Q P +S ++E++++VGE + A+ ++SRL
Sbjct: 437 EGRDCSLSE-MRRLTGANIQIVPREQ-LPAFISGTDELLEIVGEIKAARDALVEVTSRLR 494
Query: 613 ESLHRDRGP 639
L+R+ P
Sbjct: 495 SYLYREFFP 503
>ref|XP_003526723.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max]
Length = 647
Score = 340 bits (871), Expect = 4e-91
Identities = 179/320 (55%), Positives = 227/320 (70%), Gaps = 2/320 (0%)
Frame = +1
Query: 76 FRILCPEIRATAVVGKSGNSIKLIRQKTGSWITVHEIIHGDNERIIETSDSMRRDPDGRP 255
+RILC +++A V+GKSG+ IK IRQ TG+WI VHE++ GD ERIIE SD+ RRDP+GR
Sbjct: 63 YRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRM 122
Query: 256 PQFSPAQDALILIHERIVDTXXXXXXXXXXXXXXXXXXR-SGRGRITTRLVVPRSHVGCL 432
P FSPAQ+AL+LIHERI+++ +GR R+ TRLVV R HVGCL
Sbjct: 123 PSFSPAQEALLLIHERILESDAAFGVAEDDEEYGAGRGGGAGRDRVATRLVVSRMHVGCL 182
Query: 433 LGKGGKIIEQMRMETKTHIRILPRDQYTPQCVSPSEEVVQVVGEGICVKKAVEIISSRLL 612
LGKGGKIIEQMRMETKT IRILPRD P+CVS SEE+VQVVG+ VK A+ IISSRL
Sbjct: 183 LGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNALVIISSRLR 242
Query: 613 ESLHRDRGPFRGRLHSPEQYFPHDDDFMNNAQSQSAPEGFDVGSRSSTGAN-RARNKLHS 789
ES HRDR F GR+HSPE++F DDD++ + S S D S S G+N +RN H
Sbjct: 243 ESQHRDRSHFHGRVHSPERFFSPDDDYVPHVTSGSRRSSVDGASFGSRGSNTNSRNNNHP 302
Query: 790 SNSSRFAFDSDGNQAVDNSQSLSSDDIIFRILCPNEKVENVMGVSDGIIEMLRSDIGVDV 969
S S +A + VD++Q ++++FRILCP EKV+ ++G SDGI+E L+S++GVDV
Sbjct: 303 SLS--YAMEPGAAPVVDDAQGFYGEELVFRILCPVEKVDLIIGESDGIVEFLQSEVGVDV 360
Query: 970 KVCDPVPGSDERVIVITSEE 1029
KV DPV GSDE++I+ITSEE
Sbjct: 361 KVTDPVGGSDEQIIIITSEE 380
Score = 95.1 bits (235), Expect = 2e-17
Identities = 65/186 (34%), Positives = 98/186 (52%)
Frame = +1
Query: 73 VFRILCPEIRATAVVGKSGNSIKLIRQKTGSWITVHEIIHGDNERIIETSDSMRRDPDGR 252
VFRILCP + ++G+S ++ ++ + G + V + + G +E+II + +G
Sbjct: 328 VFRILCPVEKVDLIIGESDGIVEFLQSEVGVDVKVTDPVGGSDEQIIIITSE-----EGP 382
Query: 253 PPQFSPAQDALILIHERIVDTXXXXXXXXXXXXXXXXXXRSGRGRITTRLVVPRSHVGCL 432
+ PAQ+AL+ I RIVD ITTRLVVP S + CL
Sbjct: 383 DDELFPAQEALLHIQTRIVDLVLDKD-----------------NTITTRLVVPSSEIECL 425
Query: 433 LGKGGKIIEQMRMETKTHIRILPRDQYTPQCVSPSEEVVQVVGEGICVKKAVEIISSRLL 612
GK + E R+ T +I+ILPRD P CV+ ++E+VQ+VGE + AV ++SRL
Sbjct: 426 DGKDVSLSEIRRL-TGANIQILPRDD-LPLCVAKTDELVQIVGEIKAARDAVVEVTSRLR 483
Query: 613 ESLHRD 630
L+RD
Sbjct: 484 SYLYRD 489
>ref|XP_003523354.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max]
Length = 644
Score = 337 bits (864), Expect = 3e-90
Identities = 177/319 (55%), Positives = 224/319 (70%), Gaps = 1/319 (0%)
Frame = +1
Query: 76 FRILCPEIRATAVVGKSGNSIKLIRQKTGSWITVHEIIHGDNERIIETSDSMRRDPDGRP 255
+RILC +++A V+GKSG+ IK IRQ TG+WI VHE++ GD ERIIE SD+ RRDP+GR
Sbjct: 63 YRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRM 122
Query: 256 PQFSPAQDALILIHERIVDTXXXXXXXXXXXXXXXXXXRSGRGRITTRLVVPRSHVGCLL 435
P FSPAQ+AL+LIHERI+++ GR RI TRLVV R HVGCLL
Sbjct: 123 PSFSPAQEALLLIHERILESDAAFGVAEEDEEYGGRG--GGRDRIATRLVVSRMHVGCLL 180
Query: 436 GKGGKIIEQMRMETKTHIRILPRDQYTPQCVSPSEEVVQVVGEGICVKKAVEIISSRLLE 615
GKGGKIIEQMRMETKT IRILPRD P+CVS SEE+VQVVG VK A+ IISSRL E
Sbjct: 181 GKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGNVNAVKNALVIISSRLRE 240
Query: 616 SLHRDRGPFRGRLHSPEQYFPHDDDFMNNAQSQSAPEGFDVGSRSSTGAN-RARNKLHSS 792
S HRDR F GR+HSPE++F DDD++ + S S D S S G+N +RN H
Sbjct: 241 SQHRDRSHFHGRVHSPERFFSPDDDYVPHVTSGSRRSSVDGASFGSRGSNTNSRNNNHP- 299
Query: 793 NSSRFAFDSDGNQAVDNSQSLSSDDIIFRILCPNEKVENVMGVSDGIIEMLRSDIGVDVK 972
S +A + VD++Q ++++FRILCP EKV+ ++G S+GI+E L++++GVDVK
Sbjct: 300 -SLNYAMEPGAAPVVDDAQGFYGEELVFRILCPIEKVDRIIGESEGIVEFLQNEVGVDVK 358
Query: 973 VCDPVPGSDERVIVITSEE 1029
V DPV GSDE++I+ITSEE
Sbjct: 359 VTDPVGGSDEQIIIITSEE 377
Score = 94.7 bits (234), Expect = 3e-17
Identities = 64/186 (34%), Positives = 99/186 (53%)
Frame = +1
Query: 73 VFRILCPEIRATAVVGKSGNSIKLIRQKTGSWITVHEIIHGDNERIIETSDSMRRDPDGR 252
VFRILCP + ++G+S ++ ++ + G + V + + G +E+II + +G
Sbjct: 325 VFRILCPIEKVDRIIGESEGIVEFLQNEVGVDVKVTDPVGGSDEQIIIITSE-----EGP 379
Query: 253 PPQFSPAQDALILIHERIVDTXXXXXXXXXXXXXXXXXXRSGRGRITTRLVVPRSHVGCL 432
+ PAQ+AL+ + RIVD ITTRLVVP S + CL
Sbjct: 380 DDELFPAQEALLHVQTRIVDLVLDKD-----------------NTITTRLVVPSSEIECL 422
Query: 433 LGKGGKIIEQMRMETKTHIRILPRDQYTPQCVSPSEEVVQVVGEGICVKKAVEIISSRLL 612
GK + E R+ T +I+ILPRD+ P CV+ ++E+VQ+VGE + AV ++SRL
Sbjct: 423 DGKDVSLSEIRRL-TGANIQILPRDE-LPLCVAKTDELVQIVGEIKAARDAVVEVTSRLR 480
Query: 613 ESLHRD 630
L+RD
Sbjct: 481 SYLYRD 486
>ref|XP_002521934.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538859|gb|EEF40458.1| nucleic acid binding protein,
putative [Ricinus communis]
Length = 704
Score = 329 bits (843), Expect = 8e-88
Identities = 180/324 (55%), Positives = 226/324 (69%), Gaps = 6/324 (1%)
Frame = +1
Query: 76 FRILCPEIRATAVVGKSGNSIKLIRQKTGSWITVHEIIHGDNERIIETSDSMRRDPDGRP 255
+RILC +++A V+GKSG IK IRQ TG+WI VHE+I GD ERIIE SD+ RRDP+GR
Sbjct: 77 YRILCHDMKAGGVIGKSGTIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 136
Query: 256 PQFSPAQDALILIHERIV--DTXXXXXXXXXXXXXXXXXXRSGRGRITTRLVVPRSHVGC 429
P FSPAQ+AL LIH+RI+ D + R+ TRLVV R HVGC
Sbjct: 137 PAFSPAQEALFLIHDRILESDGQFGMSYANEEDEYGGRGINNSNNRVATRLVVSRMHVGC 196
Query: 430 LLGKGGKIIEQMRMETKTHIRILPRDQYTPQCVSPSEEVVQVVGEGICVKKAVEIISSRL 609
LLGKGGKIIEQMR+ETKT IRILPRD P+CVS SEE+VQVVG+ VK A+ IISSRL
Sbjct: 197 LLGKGGKIIEQMRIETKTQIRILPRDHTLPRCVSMSEEIVQVVGDVNAVKNAIAIISSRL 256
Query: 610 LESLHRDR--GPFRGRLHSPEQYFPHDD--DFMNNAQSQSAPEGFDVGSRSSTGANRARN 777
ES HRDR G F GR+HSPE++FP DD MNN +S+ +G GSR+S G N RN
Sbjct: 257 RESQHRDRSHGNFHGRMHSPERFFPDDDYVPHMNNTGRRSSIDGPSFGSRAS-GPN-YRN 314
Query: 778 KLHSSNSSRFAFDSDGNQAVDNSQSLSSDDIIFRILCPNEKVENVMGVSDGIIEMLRSDI 957
+SS + ++ G D++Q DD++FR+LCP +KV V+G SDGI+++L++DI
Sbjct: 315 SNYSSRQYGYNVEA-GAPVADSAQPFYGDDLVFRMLCPADKVNKVVGESDGILDLLQNDI 373
Query: 958 GVDVKVCDPVPGSDERVIVITSEE 1029
GVDVKV DPV GSDE++I+I+SEE
Sbjct: 374 GVDVKVSDPVSGSDEQMIIISSEE 397
Score = 84.3 bits (207), Expect = 4e-14
Identities = 57/186 (30%), Positives = 94/186 (50%)
Frame = +1
Query: 73 VFRILCPEIRATAVVGKSGNSIKLIRQKTGSWITVHEIIHGDNERIIETSDSMRRDPDGR 252
VFR+LCP + VVG+S + L++ G + V + + G +E++I S +G
Sbjct: 345 VFRMLCPADKVNKVVGESDGILDLLQNDIGVDVKVSDPVSGSDEQMIIISSE-----EGP 399
Query: 253 PPQFSPAQDALILIHERIVDTXXXXXXXXXXXXXXXXXXRSGRGRITTRLVVPRSHVGCL 432
+ PAQ+AL+ I I+D I T+L+V +GCL
Sbjct: 400 DDELFPAQEALLHIQTHIIDLVP-----------------DSDNIIKTKLIVSSGEIGCL 442
Query: 433 LGKGGKIIEQMRMETKTHIRILPRDQYTPQCVSPSEEVVQVVGEGICVKKAVEIISSRLL 612
G+ G + E R+ T I+ILPR++ P CVS ++E+VQ+ GE + A+ ++SRL
Sbjct: 443 EGRDGSLSEMERL-TGAKIQILPREK-LPACVSEADELVQIEGEIKAARDALVEVTSRLR 500
Query: 613 ESLHRD 630
L+++
Sbjct: 501 SYLYKE 506
>ref|XP_002317787.1| predicted protein [Populus trichocarpa] gi|222858460|gb|EEE96007.1|
predicted protein [Populus trichocarpa]
Length = 655
Score = 329 bits (843), Expect = 8e-88
Identities = 181/324 (55%), Positives = 224/324 (69%), Gaps = 6/324 (1%)
Frame = +1
Query: 76 FRILCPEIRATAVVGKSGNSIKLIRQKTGSWITVHEIIHGDNERIIETSDSMRRDPDGRP 255
+RILC +++A V+GKSG+ IK IRQ TG+WI VHE+I GD ERIIE SD+ RRDP+GR
Sbjct: 62 YRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 121
Query: 256 PQFSPAQDALILIHERIVDTXXXXXXXXXXXXXXXXXXRSGRG--RITTRLVVPRSHVGC 429
P FSPAQ+AL LIH+RI++ GRG R+ TRLVV R HVGC
Sbjct: 122 PSFSPAQEALFLIHDRILENDLQYGVVSSGVGGLEEDEYVGRGGNRVATRLVVSRMHVGC 181
Query: 430 LLGKGGKIIEQMRMETKTHIRILPRDQYTPQCVSPSEEVVQVVGEGICVKKAVEIISSRL 609
LLGKGGKIIEQMRMETKT IRILPRD P+CVS SEE+VQVVG+ VK AV IISSRL
Sbjct: 182 LLGKGGKIIEQMRMETKTQIRILPRDHTLPRCVSMSEEIVQVVGDVSAVKNAVAIISSRL 241
Query: 610 LESLHRDRGPFRGRLHSPEQYFPHDDDF---MNNAQ-SQSAPEGFDVGSRSSTGANRARN 777
ES HRDR F GR+HSPE+ F DDD+ MN + S P F GSR + RN
Sbjct: 242 RESQHRDRSHFHGRVHSPERLF--DDDYAPHMNTRRSSMDGPPSF--GSR--VPGSNYRN 295
Query: 778 KLHSSNSSRFAFDSDGNQAVDNSQSLSSDDIIFRILCPNEKVENVMGVSDGIIEMLRSDI 957
+SS +S FA D+ + D++Q +D++FRILCP +K+ V+G SDGI+++L+++I
Sbjct: 296 NNYSSRASGFAADAGADPIADSAQPFYVEDLVFRILCPIDKLNRVVGESDGIVDLLQNEI 355
Query: 958 GVDVKVCDPVPGSDERVIVITSEE 1029
GVDVKV DPV GSDE++I I SEE
Sbjct: 356 GVDVKVADPVSGSDEQIITIFSEE 379
Score = 78.6 bits (192), Expect = 2e-12
Identities = 58/186 (31%), Positives = 92/186 (49%)
Frame = +1
Query: 73 VFRILCPEIRATAVVGKSGNSIKLIRQKTGSWITVHEIIHGDNERIIETSDSMRRDPDGR 252
VFRILCP + VVG+S + L++ + G + V + + G +E+II +G
Sbjct: 327 VFRILCPIDKLNRVVGESDGIVDLLQNEIGVDVKVADPVSGSDEQIITIFSE-----EGP 381
Query: 253 PPQFSPAQDALILIHERIVDTXXXXXXXXXXXXXXXXXXRSGRGRITTRLVVPRSHVGCL 432
+ PAQ+AL+ I RIVD TTRL+V S +GCL
Sbjct: 382 DDELFPAQEALLHIQTRIVDLVPDNDHI-----------------TTTRLLVRSSEIGCL 424
Query: 433 LGKGGKIIEQMRMETKTHIRILPRDQYTPQCVSPSEEVVQVVGEGICVKKAVEIISSRLL 612
G+ + E R+ T I ILP+++ P +S +E+VQ+ GE + A+ ++SRL
Sbjct: 425 EGRDASLSEIERL-TGATIEILPKEK-LPSYLSGIDEIVQIEGEIRAARDALVEVTSRLR 482
Query: 613 ESLHRD 630
+++D
Sbjct: 483 SYIYKD 488