BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00003937
         (1150 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_21046778.1| putative GTPase, G3E family [Leptolyngbya sp....   108   2e-21
ref|YP_477409.1| cobalamin biosynthesis protein CobW [Synechococ...   108   3e-21
ref|YP_007117935.1| cobalamin synthesis protein P47K [Oscillator...   107   6e-21
ref|YP_475088.1| cobalamin biosynthesis protein CobW [Synechococ...   105   3e-20
ref|ZP_05790442.1| cobalamin synthesis protein/P47K [Synechococc...   105   3e-20

>ref|ZP_21046778.1| putative GTPase, G3E family [Leptolyngbya sp. PCC 6406]
           gi|442783054|gb|ELR92981.1| putative GTPase, G3E family
           [Leptolyngbya sp. PCC 6406]
          Length = 379

 Score =  108 bits (271), Expect = 2e-21
 Identities = 96/311 (30%), Positives = 150/311 (48%), Gaps = 18/311 (5%)
 Frame = +3

Query: 27  VALTHGCACCDVKGPFRDALQRIVDSKHNFDCLLIETSGLARP-----DMFVAQLEEVGI 191
           + LT+GC CC +      A+ RI++ +   D L+IET+G+A P          +L ++  
Sbjct: 66  IELTNGCICCTINDDLMQAVYRILEKRDRIDYLVIETTGVADPLPITLTFLGTELRDL-T 124

Query: 192 HLDLTITVVDAESL-XXXXXXXXXXXQLEHVDLVLLNKCDLATLGQISDAEDILERLTGN 368
            LD  +TVVDAES             Q+ + D++LLNK DL +  ++   E  L  L  N
Sbjct: 125 RLDSILTVVDAESFEIDLFKSQAAYSQVAYGDILLLNKTDLVSPERLDQVERDLHVLREN 184

Query: 369 AKVVRSQFCKVPLDLVIDCSKIEALSLPEEECNSVLPVLSH--EALPKMRFQRNVFGNTS 542
            K++RSQ  +VPL L+ID  K+    L + E  + L   SH  +A      + +   +  
Sbjct: 185 VKILRSQNGQVPLPLIIDV-KLGDSGLYQGEVAAELEAASHDPDASDHHGDEHHHDDHDH 243

Query: 543 VAVSSLNNTSNHPAVSSDENNADASGSGLSH-------GEFFSSVTFQSEVPLSLAMFQS 701
               S+++ S H   + D  + D  G    H        + F S++F+S+ P  L  FQ 
Sbjct: 244 SHDHSVHDPSPHGHGAHDHGHHDHHGHEHHHHHSAHLDNDGFISMSFRSDQPFGLKKFQQ 303

Query: 702 EV---LPRMRNSFRLLRAKGIIWFAEDRGTRFVFQWSGVKRIEAVSGQPWDTVPKSCLVL 872
            +   LP       + R KGI+WF E +   F FQ +G KR + +  Q W   P++ LV 
Sbjct: 304 FLDFELPE-----EVFRMKGILWFKESKARHF-FQLTG-KRFQ-LEDQEWQGAPENQLVC 355

Query: 873 IGIDSSELEDI 905
           IG  + +LED+
Sbjct: 356 IG-RNLDLEDL 365


>ref|YP_477409.1| cobalamin biosynthesis protein CobW [Synechococcus sp.
           JA-2-3B'a(2-13)] gi|86557189|gb|ABD02146.1| putative
           cobalamin biosynthesis protein CobW [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 339

 Score =  108 bits (270), Expect = 3e-21
 Identities = 87/308 (28%), Positives = 153/308 (49%), Gaps = 9/308 (2%)
 Frame = +3

Query: 27  VALTHGCACCDVKGPFRDALQRIVDSKHNFDCLLIETSGLARP-----DMFVAQLEEVGI 191
           V L +GC CC ++    +++ R+++   + D L++ET+GLA P          +L ++  
Sbjct: 60  VELNNGCICCTIRDDIAESVLRLMERSDHIDYLVVETTGLADPLPVALTFLGPELRDL-T 118

Query: 192 HLDLTITVVDAESLXXXXXXXXXXX-QLEHVDLVLLNKCDLATLGQISDAEDILERLTGN 368
            LD  IT+VDA +             Q+ + D++LLNK DL    +I   E  +  +  +
Sbjct: 119 RLDSIITLVDATNFAPDLFNSNVAYSQIAYGDVILLNKIDLVEEAEIERLEKRIREIKED 178

Query: 369 AKVVRSQFCKVPLDLVIDCSKIEALSLPEEECNSVLPVLSHEALPKMRFQRNVFGNTSVA 548
           A+++R+    VPL+L++D    +A SLP+EE +       H+                 +
Sbjct: 179 ARILRTVNSAVPLELILDTDLFQASSLPQEEAH------DHD-----------------S 215

Query: 549 VSSLNNTSNHPAVSSDENNADASGSGLSHGEFFSSVTFQSEVPLSLAMFQSEVLPRMRNS 728
               ++  +H    S  ++ +A G        F+S+ F+S+ P SL  FQ+  L  + ++
Sbjct: 216 HDHHDHEHDHDHHHSHHSHIEADG--------FNSLAFESDQPFSLDAFQN-FLNELPDA 266

Query: 729 FRLLRAKGIIWFAEDRGTRFVFQWSGVKRIEAVSGQPWDTVPKSCLVLIG--IDSSEL-E 899
             + RAKG++WF E+   R +F  SG  R   +S   W   PK+ LVLIG  +D+++L +
Sbjct: 267 --VFRAKGVLWF-EESPERHIFHLSG--RRYTLSSDEWPRQPKNQLVLIGQRLDTAQLRK 321

Query: 900 DIFVCLSR 923
            +  CL+R
Sbjct: 322 KLQACLAR 329


>ref|YP_007117935.1| cobalamin synthesis protein P47K [Oscillatoria nigro-viridis PCC
           7112] gi|428243733|gb|AFZ09519.1| cobalamin synthesis
           protein P47K [Oscillatoria nigro-viridis PCC 7112]
          Length = 358

 Score =  107 bits (267), Expect = 6e-21
 Identities = 85/306 (27%), Positives = 147/306 (48%), Gaps = 9/306 (2%)
 Frame = +3

Query: 27  VALTHGCACCDVKGPFRDALQRIVDSKHNFDCLLIETSGLARPDMFV-----AQLEEVGI 191
           V L++GC CC +     DA+ R+++ +   DC++IET+G+A P   +      +L ++  
Sbjct: 74  VELSNGCICCTINEGLVDAVYRVLEREDRIDCMVIETTGVADPLPIILTFIGTELRDL-T 132

Query: 192 HLDLTITVVDAESL-XXXXXXXXXXXQLEHVDLVLLNKCDLATLGQISDAEDILERLTGN 368
            LD  +TVVD+E+             Q+   D+VL+NK DLA   ++ + E  +  +   
Sbjct: 133 SLDSVLTVVDSETFTTDHFDSEAALKQVAFADIVLMNKTDLAPSEKVEELEAYIRTVKEG 192

Query: 369 AKVVRSQFCKVPLDLVIDCSKIEALSLPEEECNSVLPVLSHEALPKMRFQRNVFGNTSVA 548
           A+++ S++ +VPL L++     +A      E  +      HE       + N        
Sbjct: 193 ARILHSEYGEVPLPLILGVGLTQADLFDNFETEAKHEHHEHE----HHHEHN-------- 240

Query: 549 VSSLNNTSNHPAVSSDENNADASGSGLSHGEFFSSVTFQSEVPLSLAMFQSEVLPRMRNS 728
               ++  +H      E++     S     + F S++FQS+ P  L  FQ  +   M   
Sbjct: 241 ----HHEHHHEHEDHHEHHHHGHHSNHLDNDGFISLSFQSDRPFDLHKFQEFLTQEM--P 294

Query: 729 FRLLRAKGIIWFAEDRGTRFVFQWSGVKRIEAVSGQPWDTVPKSCLVLIG--IDSSEL-E 899
             + RAKGI+WF ED   R +FQ SG +    ++   W T PK+ LV+IG  +D++++ E
Sbjct: 295 LDVFRAKGILWF-EDSPMRHIFQLSGAR--YELNAYEWLTPPKNQLVVIGRNLDTAQIRE 351

Query: 900 DIFVCL 917
            +  CL
Sbjct: 352 QLNSCL 357


>ref|YP_475088.1| cobalamin biosynthesis protein CobW [Synechococcus sp. JA-3-3Ab]
           gi|86554867|gb|ABC99825.1| putative cobalamin
           biosynthesis protein CobW [Synechococcus sp. JA-3-3Ab]
          Length = 329

 Score =  105 bits (261), Expect = 3e-20
 Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 11/308 (3%)
 Frame = +3

Query: 27  VALTHGCACCDVKGPFRDALQRIVDSKHNFDCLLIETSGLARP-----DMFVAQLEEVGI 191
           V L +GC CC ++    +++ R+++     D L++ET+GLA P          +L ++  
Sbjct: 55  VELNNGCICCTIRDDIVESVLRLMERSDKIDYLVVETTGLADPLPVALTFLGPELRDL-T 113

Query: 192 HLDLTITVVDAESLXXXXXXXXXXX-QLEHVDLVLLNKCDLATLGQISDAEDILERLTGN 368
            LD  IT+VDA +             Q+ + D++LLNK DL    +I   E  +  +  +
Sbjct: 114 RLDSIITLVDASNFAPDLFNSDVAYSQIAYGDVILLNKTDLVEPAEIERLEKRIREIKED 173

Query: 369 AKVVRSQFCKVPLDLVIDCSKIEALSLPEEECNSVLPVLSHEALPKMRFQRNVFGNTSVA 548
           A+++R+    VPL+L++D    ++ SLP+EE                             
Sbjct: 174 ARILRTVNSAVPLELILDTDLFQSSSLPQEEAPD-------------------------- 207

Query: 549 VSSLNNTSNHPAVSSDENNADASGSGLSHGEF--FSSVTFQSEVPLSLAMFQSEVLPRMR 722
                  + H      E+  D   S  SH E   F+S+ F+S+ P SL  FQ+  L  + 
Sbjct: 208 -------AEHDHEHDHEHGHDHGHSHRSHIEVDGFNSLAFESDRPFSLDAFQN-FLNELP 259

Query: 723 NSFRLLRAKGIIWFAEDRGTRFVFQWSGVKRIEAVSGQPWDTVPKSCLVLIG--IDSSEL 896
           ++  + RAKGI+WF E+   R +F  SG  R   +S   W   PK+ LVLIG  +D+++L
Sbjct: 260 DA--VFRAKGILWF-EESPERHIFHLSG--RRYTLSSDAWPRQPKNQLVLIGQHLDTAKL 314

Query: 897 -EDIFVCL 917
            + +  CL
Sbjct: 315 RQKLEACL 322


>ref|ZP_05790442.1| cobalamin synthesis protein/P47K [Synechococcus sp. WH 8109]
           gi|260414346|gb|EEX07642.1| cobalamin synthesis
           protein/P47K [Synechococcus sp. WH 8109]
          Length = 362

 Score =  105 bits (261), Expect = 3e-20
 Identities = 89/313 (28%), Positives = 144/313 (46%), Gaps = 27/313 (8%)
 Frame = +3

Query: 27  VALTHGCACCDVKGPFRDALQRIVDSKHNFDCLLIETSGLARP----DMFVAQLEEVGIH 194
           V L++GC CC +     +A++R+++     D +++ET+GLA P      F+         
Sbjct: 64  VELSNGCICCSINDELMEAVERVIERPEPLDYIVVETTGLADPLPVAMTFLGSELRDQTR 123

Query: 195 LDLTITVVDAESL-XXXXXXXXXXXQLEHVDLVLLNKCDLATLGQISDAEDILERLTGNA 371
           LD  IT++DAE+             Q+ + D++LLNKCDL +  ++   E  L  +  +A
Sbjct: 124 LDSIITLIDAENFDDVVLDTEVGRAQVIYGDILLLNKCDLVSEERLESVEQQLRAVKNDA 183

Query: 372 KVVRSQFCKVPLDLVIDCSKIEA--LSLPEEECNSVLPVLSHEALPKMRFQRNVFGNTSV 545
           +++RS   +VPL L++     E+  +S P ++     P L H                  
Sbjct: 184 RILRSVKGEVPLALLLSVGLFESDKVSSPADD-----PSLDH------------------ 220

Query: 546 AVSSLNNTSNHPAVSSDENNADASGSGLSHG--------------------EFFSSVTFQ 665
             S  ++   H +   + +++   G G SHG                    E F+SV+FQ
Sbjct: 221 --SDCDHDHGHCSHDHEHDHSHGHGHGHSHGDGHDHGHHHHSHEHGDHQDIEGFTSVSFQ 278

Query: 666 SEVPLSLAMFQSEVLPRMRNSFRLLRAKGIIWFAEDRGTRFVFQWSGVKRIEAVSGQPWD 845
           S+ P SL  FQ+ +  +M     + RAKGI+WF E    R VF  +G KR  ++    W 
Sbjct: 279 SDGPFSLRKFQNFLDNQMPQ--EVFRAKGILWFNESE-RRHVFHLAG-KRF-SIDDTDWT 333

Query: 846 TVPKSCLVLIGID 884
              K+ LVLIG D
Sbjct: 334 GDRKNQLVLIGRD 346