BLASTX nr result

ID: Dioscorea21_contig00003883 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00003883
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15530.3| unnamed protein product [Vitis vinifera]              197   1e-48
ref|XP_002280982.1| PREDICTED: eukaryotic peptide chain release ...   197   1e-48
ref|XP_002329194.1| predicted protein [Populus trichocarpa] gi|2...   197   1e-48
ref|XP_003631062.1| Eukaryotic peptide chain release factor GTP-...   196   2e-48
ref|XP_003532534.1| PREDICTED: eukaryotic peptide chain release ...   195   3e-48

>emb|CBI15530.3| unnamed protein product [Vitis vinifera]
          Length = 8416

 Score =  197 bits (500), Expect = 1e-48
 Identities = 107/147 (72%), Positives = 111/147 (75%)
 Frame = +1

Query: 1    DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTSEEERVKGKTVEVG 180
            DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDT+EEERVKGKTVEVG
Sbjct: 7996 DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVG 8055

Query: 181  RAHFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASQADVGVLVISARKGEFET 360
            RAHF                                    ASQAD+GVLVISARKGEFET
Sbjct: 8056 RAHF-----------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 8104

Query: 361  GYEKGGQTREHVQLAKTLGVSKLVVVV 441
            GYE+GGQTREHVQLAKTLGVSKL+VVV
Sbjct: 8105 GYERGGQTREHVQLAKTLGVSKLLVVV 8131


>ref|XP_002280982.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding
           subunit ERF3B-like [Vitis vinifera]
          Length = 512

 Score =  197 bits (500), Expect = 1e-48
 Identities = 107/147 (72%), Positives = 111/147 (75%)
 Frame = +1

Query: 1   DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTSEEERVKGKTVEVG 180
           DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDT+EEERVKGKTVEVG
Sbjct: 92  DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVG 151

Query: 181 RAHFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASQADVGVLVISARKGEFET 360
           RAHF                                    ASQAD+GVLVISARKGEFET
Sbjct: 152 RAHF-----------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 200

Query: 361 GYEKGGQTREHVQLAKTLGVSKLVVVV 441
           GYE+GGQTREHVQLAKTLGVSKL+VVV
Sbjct: 201 GYERGGQTREHVQLAKTLGVSKLLVVV 227


>ref|XP_002329194.1| predicted protein [Populus trichocarpa] gi|222870975|gb|EEF08106.1|
           predicted protein [Populus trichocarpa]
          Length = 524

 Score =  197 bits (500), Expect = 1e-48
 Identities = 107/147 (72%), Positives = 111/147 (75%)
 Frame = +1

Query: 1   DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTSEEERVKGKTVEVG 180
           DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDT+EEERVKGKTVEVG
Sbjct: 104 DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVG 163

Query: 181 RAHFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASQADVGVLVISARKGEFET 360
           RAHF                                    ASQAD+GVLVISARKGEFET
Sbjct: 164 RAHF-----------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 212

Query: 361 GYEKGGQTREHVQLAKTLGVSKLVVVV 441
           GYE+GGQTREHVQLAKTLGVSKL+VVV
Sbjct: 213 GYERGGQTREHVQLAKTLGVSKLLVVV 239


>ref|XP_003631062.1| Eukaryotic peptide chain release factor GTP-binding subunit
           [Medicago truncatula] gi|355525084|gb|AET05538.1|
           Eukaryotic peptide chain release factor GTP-binding
           subunit [Medicago truncatula]
          Length = 497

 Score =  196 bits (497), Expect = 2e-48
 Identities = 106/147 (72%), Positives = 111/147 (75%)
 Frame = +1

Query: 1   DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTSEEERVKGKTVEVG 180
           DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDT+EEERVKGKTVEVG
Sbjct: 83  DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVG 142

Query: 181 RAHFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASQADVGVLVISARKGEFET 360
           RAHF                                    ASQAD+GVLVISARKGEFET
Sbjct: 143 RAHF-----------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 191

Query: 361 GYEKGGQTREHVQLAKTLGVSKLVVVV 441
           GYE+GGQTREHVQLAKTLGV+KL+VVV
Sbjct: 192 GYERGGQTREHVQLAKTLGVTKLLVVV 218


>ref|XP_003532534.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding
           subunit ERF3A-like [Glycine max]
          Length = 570

 Score =  195 bits (496), Expect = 3e-48
 Identities = 106/147 (72%), Positives = 111/147 (75%)
 Frame = +1

Query: 1   DAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTSEEERVKGKTVEVG 180
           DAGKSTTGGQILFLSGQVD+RTIQKYEKEAKDKSRESWYMAYIMDT+EEERVKGKTVEVG
Sbjct: 156 DAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVG 215

Query: 181 RAHFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASQADVGVLVISARKGEFET 360
           RAHF                                    ASQAD+GVLVISARKGEFET
Sbjct: 216 RAHF-----------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 264

Query: 361 GYEKGGQTREHVQLAKTLGVSKLVVVV 441
           GYE+GGQTREHVQLAKTLGVSKL+VVV
Sbjct: 265 GYERGGQTREHVQLAKTLGVSKLLVVV 291


Top