BLASTX nr result

ID: Dioscorea21_contig00003547 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00003547
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002889368.1| hypothetical protein ARALYDRAFT_470137 [Arab...    56   3e-06
ref|XP_002320186.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06
ref|NP_001054930.1| Os05g0214900 [Oryza sativa Japonica Group] g...    55   4e-06

>ref|XP_002889368.1| hypothetical protein ARALYDRAFT_470137 [Arabidopsis lyrata subsp.
           lyrata] gi|297335210|gb|EFH65627.1| hypothetical protein
           ARALYDRAFT_470137 [Arabidopsis lyrata subsp. lyrata]
          Length = 448

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
 Frame = +1

Query: 154 VFFKFIGSVLLASAACYLFIGNFNAWTPETKNHSLPLEEQDGLNIRPLRKE----SSVRE 321
           +F K +   LL   A Y FI   +  +P T   +LP  +  GL  +         +++  
Sbjct: 27  IFLKSVAFFLLIGLA-YRFIVTDSTVSPVTNVQTLPPADPSGLTAQASLDSPGNITTIIP 85

Query: 322 QQLKKEVCDLSVGEWVPNPAGPAYTDKTCDGIPGYNNC 435
            Q     CD+ +G WVP+P+GPAYT+ +C  I  Y NC
Sbjct: 86  SQNVSTKCDIFIGNWVPDPSGPAYTNVSCRHIQDYQNC 123


>ref|XP_002320186.1| predicted protein [Populus trichocarpa] gi|222860959|gb|EEE98501.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
 Frame = +1

Query: 154 VFFKFIGSVLLASAACYLFIGNFNAWT--------------PETKNHSLPLEEQDGLNIR 291
           V  KF  S LL   A +L I +   ++              PE+   SLP EE       
Sbjct: 20  VIIKFAVSFLLVGLAFHLLISDSFRFSSVVETLVPANEETEPESLVASLPAEE------- 72

Query: 292 PLRKESSVREQQLKKE-VCDLSVGEWVPNPAGPAYTDKTCDGIPGYNNC 435
           P+  + +  E Q  +   CDL VG+W+P+P+GP YT+++C  I G+ NC
Sbjct: 73  PVSNDFAANESQTSQPGKCDLFVGDWIPDPSGPFYTNQSCLQIEGHQNC 121


>ref|NP_001054930.1| Os05g0214900 [Oryza sativa Japonica Group]
           gi|48843851|gb|AAT47110.1| unknown protein [Oryza sativa
           Japonica Group] gi|113578481|dbj|BAF16844.1|
           Os05g0214900 [Oryza sativa Japonica Group]
           gi|218196293|gb|EEC78720.1| hypothetical protein
           OsI_18899 [Oryza sativa Indica Group]
          Length = 245

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +1

Query: 307 SSVREQQLKKEVCDLSVGEWVPNPAGPAYTDKTCDGIPGYNNC 435
           SS    ++ +  C+L  GEW+PNP+GPAYT+KTC  I G+ NC
Sbjct: 61  SSTSSPEISEGKCNLFDGEWIPNPSGPAYTNKTCRFIDGHQNC 103


Top