BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00003127
         (1006 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptid...   301   1e-79
ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group] g...   300   3e-79
gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japo...   298   2e-78
gb|AEO35178.1| hypothetical protein [Amblyomma maculatum]             294   2e-77
ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea ma...   293   4e-77

>gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Elaeis
           guineensis]
          Length = 204

 Score =  301 bits (772), Expect = 1e-79
 Identities = 149/192 (77%), Positives = 171/192 (89%)
 Frame = +3

Query: 90  EELSSRLFRVRRTVMQMLRDRGYLVVDRDVNMTKAEFVQKFGESVNRDDLIFNKAKKNDP 269
           E+  SRLFR+RRTVMQMLRDRGYLV+D ++NM K +F++KFGE V R+DL+ NKAKKNDP
Sbjct: 3   EDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKNDP 62

Query: 270 SDQIYVFFPNDAKVGVKHIKKYVELMKAENVPRAILVVQQNLTPFARSSLQDISPKFHLE 449
           +DQIYVFFPNDAKVGVK IK+YVE MKAENV R ILVVQQ LTPFAR SL ++S K+ LE
Sbjct: 63  ADQIYVFFPNDAKVGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSLAEVSQKYMLE 122

Query: 450 VFQEGELLVNIKDHSLVPEHQVLSSEEKATLLQRYTVKETQLPRIQVTDPVARYYGMTRG 629
           VFQ+ ELLVNIK+H LVPEHQVL+SEEK TLL+RYT+KETQLPRIQVTDP+ARYYG+ RG
Sbjct: 123 VFQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRG 182

Query: 630 QVVKIIRPSETA 665
           QVVKIIRPSETA
Sbjct: 183 QVVKIIRPSETA 194


>ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group]
           gi|55296830|dbj|BAD68174.1| putative DNA-directed RNA
           polymerase II 23K chain [Oryza sativa Japonica Group]
           gi|113534095|dbj|BAF06478.1| Os01g0805800 [Oryza sativa
           Japonica Group] gi|215737136|dbj|BAG96065.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215765546|dbj|BAG87243.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218189238|gb|EEC71665.1| hypothetical protein
           OsI_04128 [Oryza sativa Indica Group]
          Length = 210

 Score =  300 bits (769), Expect = 3e-79
 Identities = 143/192 (74%), Positives = 172/192 (89%)
 Frame = +3

Query: 90  EELSSRLFRVRRTVMQMLRDRGYLVVDRDVNMTKAEFVQKFGESVNRDDLIFNKAKKNDP 269
           E +  RL R+RRTVMQMLRDRGYLVV+ ++ M + +F++K+GES +R+DL+ NK KKNDP
Sbjct: 9   EVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDP 68

Query: 270 SDQIYVFFPNDAKVGVKHIKKYVELMKAENVPRAILVVQQNLTPFARSSLQDISPKFHLE 449
           SDQIYVFFPND KVG+KHIKKYVE+MKAENV RA+LV+QQNLTPFARS LQ++ PK HLE
Sbjct: 69  SDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLE 128

Query: 450 VFQEGELLVNIKDHSLVPEHQVLSSEEKATLLQRYTVKETQLPRIQVTDPVARYYGMTRG 629
           +FQE ELL+NIK+H LVPEHQVL++EEK TLL+RYT+KETQLPRIQ+TDP+ARYYG+ RG
Sbjct: 129 IFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRG 188

Query: 630 QVVKIIRPSETA 665
           QVVKIIRPSETA
Sbjct: 189 QVVKIIRPSETA 200


>gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japonica Group]
          Length = 210

 Score =  298 bits (762), Expect = 2e-78
 Identities = 142/192 (73%), Positives = 171/192 (89%)
 Frame = +3

Query: 90  EELSSRLFRVRRTVMQMLRDRGYLVVDRDVNMTKAEFVQKFGESVNRDDLIFNKAKKNDP 269
           E +  RL R+RRTVMQMLRDRGYLVV+ ++ M + +F++K+GES +R+DL+ NK KKNDP
Sbjct: 9   EVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDP 68

Query: 270 SDQIYVFFPNDAKVGVKHIKKYVELMKAENVPRAILVVQQNLTPFARSSLQDISPKFHLE 449
           SDQIYVFFPND KVG+KHIKKYVE+MKAENV RA+LV+QQNLTPFARS LQ++ PK HLE
Sbjct: 69  SDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLE 128

Query: 450 VFQEGELLVNIKDHSLVPEHQVLSSEEKATLLQRYTVKETQLPRIQVTDPVARYYGMTRG 629
           +FQE ELL+NIK+H LVPEHQVL++ EK TLL+RYT+KETQLPRIQ+TDP+ARYYG+ RG
Sbjct: 129 IFQEAELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRG 188

Query: 630 QVVKIIRPSETA 665
           QVVKIIRPSETA
Sbjct: 189 QVVKIIRPSETA 200


>gb|AEO35178.1| hypothetical protein [Amblyomma maculatum]
          Length = 205

 Score =  294 bits (753), Expect = 2e-77
 Identities = 145/192 (75%), Positives = 167/192 (86%)
 Frame = +3

Query: 90  EELSSRLFRVRRTVMQMLRDRGYLVVDRDVNMTKAEFVQKFGESVNRDDLIFNKAKKNDP 269
           E+  SRLFR+RRTVM+MLRDR YLVVD ++NMTK +F+ KFGE V RDDL  NK KK DP
Sbjct: 4   EQQISRLFRIRRTVMEMLRDRNYLVVDYELNMTKLDFLHKFGEGVKRDDLTINKYKKGDP 63

Query: 270 SDQIYVFFPNDAKVGVKHIKKYVELMKAENVPRAILVVQQNLTPFARSSLQDISPKFHLE 449
           SDQIYVFFPND KVG+KHIKK VELMK ENV R+ILVVQQNLTPFA++ L +++PKF LE
Sbjct: 64  SDQIYVFFPNDDKVGMKHIKKCVELMKTENVTRSILVVQQNLTPFAKAHLLELTPKFILE 123

Query: 450 VFQEGELLVNIKDHSLVPEHQVLSSEEKATLLQRYTVKETQLPRIQVTDPVARYYGMTRG 629
           VF E ELLVNIK H L+PEHQVL++EEK TLL+RYT+KETQLPRIQ+TDP+ARYYG+ RG
Sbjct: 124 VFLEAELLVNIKKHVLIPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRG 183

Query: 630 QVVKIIRPSETA 665
           QVVKIIRPSETA
Sbjct: 184 QVVKIIRPSETA 195


>ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea mays]
           gi|226533456|ref|NP_001152590.1| DNA-directed RNA
           polymerases II 24 kDa polypeptide [Zea mays]
           gi|194703030|gb|ACF85599.1| unknown [Zea mays]
           gi|195657875|gb|ACG48405.1| DNA-directed RNA polymerases
           II 24 kDa polypeptide [Zea mays]
           gi|413952167|gb|AFW84816.1| DNA-directed RNA polymerase
           II polypeptide [Zea mays]
          Length = 210

 Score =  293 bits (750), Expect = 4e-77
 Identities = 139/192 (72%), Positives = 169/192 (88%)
 Frame = +3

Query: 90  EELSSRLFRVRRTVMQMLRDRGYLVVDRDVNMTKAEFVQKFGESVNRDDLIFNKAKKNDP 269
           E    RL+R+RRTVMQMLRDRGYLVVD ++  ++ +F++KFGES +R+DL+ NK KKNDP
Sbjct: 9   EATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDP 68

Query: 270 SDQIYVFFPNDAKVGVKHIKKYVELMKAENVPRAILVVQQNLTPFARSSLQDISPKFHLE 449
           SDQIYVFFPND KVG+KHIKKYVE+M  ENV RA+LV+QQNLTPFA+S L ++ PK HLE
Sbjct: 69  SDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLE 128

Query: 450 VFQEGELLVNIKDHSLVPEHQVLSSEEKATLLQRYTVKETQLPRIQVTDPVARYYGMTRG 629
           +FQE E+L+NIK+H LVPEHQVL++EEK TLL+RYT+KETQLPRIQ+TDP+ARYYG+ RG
Sbjct: 129 IFQEAEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRG 188

Query: 630 QVVKIIRPSETA 665
           QVVKIIRPSETA
Sbjct: 189 QVVKIIRPSETA 200