BLASTX nr result
ID: Dioscorea21_contig00002359
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00002359
(5976 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2810 0.0
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S... 2759 0.0
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z... 2756 0.0
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare] 2742 0.0
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su... 2732 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2810 bits (7283), Expect = 0.0
Identities = 1395/1536 (90%), Positives = 1449/1536 (94%)
Frame = +1
Query: 199 MDMRFPYSPAEVAKVRTVQFGILSPDEIRQMSVTEILHAETMERGKPKVGGLSDSRLGTI 378
MDMRFPYSPAEVAKVR VQFGILSPDEIRQMSV +I H+ET ERGKPK GGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 379 DRKLKCETCSANMAECPGHFGHLELAKPMFHIGFMKTVLAIMRCVCFNCSKILADPDEPR 558
DRK+KCETC+ANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRCVCFNCSKILAD ++ +
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 559 FKQALRIRNPKHRLKRIYDTXXXXXXXXXXXXXXXXXXXXSEEPVKKTRGGCGAQQPTIT 738
FKQA +IRNPK+RLK+I D S+EPVKK+RGGCGAQQP +T
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALD-SDEPVKKSRGGCGAQQPKLT 179
Query: 739 IDGMKMVAEYKAXXXXXXXXXXLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYA 918
I+GMKM+AEYK LPEPVERKQQLSAERVL+VLKRISDEDC+LLGLNPKYA
Sbjct: 180 IEGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYA 239
Query: 919 RPDWMILQXXXXXXXXXXXXXMMDTSSRSEDDLTHQLAMIIRHNDNLKRQEKNGAPAHII 1098
RPDWMILQ MMDTSSRSEDDLTHQLAMIIRHN+NL+RQE+NGAPAHII
Sbjct: 240 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299
Query: 1099 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 1278
+EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300 SEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359
Query: 1279 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 1458
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419
Query: 1459 REDGQRLDLRFLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 1638
REDGQRLDLR+LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420 REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479
Query: 1639 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 1818
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539
Query: 1819 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 1998
TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 599
Query: 1999 NLIRTSAWHSESERGFITPGDTQVRIEKGEVLSGTLCKRTLGSSNGSLIHVIWEEVGPDA 2178
NL+RTSAWHSESE GFITPGDTQVRIEKGE+L+GTLCK+TLG+S GSLIHVIWEEVGPDA
Sbjct: 600 NLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDA 659
Query: 2179 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2358
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKN+VKELI+ AQE+Q
Sbjct: 660 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQ 719
Query: 2359 LEAEPGRTMMDSFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2538
LEAEPGRTMM+SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779
Query: 2539 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2718
TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839
Query: 2719 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 2898
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ
Sbjct: 840 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 899
Query: 2899 KLDSLKMKKAEFDHVYRYEIDDDNWNPSYMLQEHVEDLKTIREFRNVFDAEARKLEADRY 3078
KLDSLKMKK EFD V++YEIDD+NWNPSYML EHVEDLKTIREFRNVFDAE +KLEADR+
Sbjct: 900 KLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRF 959
Query: 3079 QLGMEIATTGDSNWHLPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 3258
QLG EIATTGD++W +PVNLKRLIWNAQK FKVDLRRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 960 QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1019
Query: 3259 PGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 3438
PGDDL+SMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1079
Query: 3439 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 3618
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139
Query: 3619 KPEVHGKKEMAKNVQCSLEYTTLRSVTHATEVWYDPDPTSTIIEEDVEFVKSYYEMPDEE 3798
KP+V KE AKNVQC+LEYTTLRSVT ATEVWYDPDP STIIEEDV+FVKSYYEMPDEE
Sbjct: 1140 KPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE 1199
Query: 3799 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKIGHEFGDDLTCIFNDDNAEKLILRIRI 3978
VAPEKISPWLLRIELNREMMVDKKLSMADIAEKI EF DDLTCIFNDDNAEKLILRIRI
Sbjct: 1200 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259
Query: 3979 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQGKINKFDQEEGFK 4158
MND+APKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+NKFD+ EGFK
Sbjct: 1260 MNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFK 1319
Query: 4159 SESEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 4338
E EWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379
Query: 4339 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEAD 4518
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1439
Query: 4519 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPVSGT 4698
LRGVTENIMLGQLAPIGTG CALYLNDQMLQ AIELQLPSYMEGLDFGMTPSRSP++GT
Sbjct: 1440 FLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGT 1499
Query: 4699 PYHEGMMSPSYLLSPNARSSPITDAQFSPYVGGMGF 4806
PYH+GMMSP+YLLSPN R SPITDAQFSPYVGGM F
Sbjct: 1500 PYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein
SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 2759 bits (7152), Expect = 0.0
Identities = 1365/1537 (88%), Positives = 1440/1537 (93%), Gaps = 1/1537 (0%)
Frame = +1
Query: 199 MDMRFPYSPAEVAKVRTVQFGILSPDEIRQMSVTEILHAETMERGKPKVGGLSDSRLGTI 378
MD RFPYSPAEVAKV VQFGILSPDEIRQMSV +I HAETMERGKPK GGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 379 DRKLKCETCSANMAECPGHFGHLELAKPMFHIGFMKTVLAIMRCVCFNCSKILADPDEPR 558
DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILAD DE +
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120
Query: 559 FKQALRIRNPKHRLKRIYDTXXXXXXXXXXXXXXXXXXXXSEEPVKKTRGGCGAQQPTIT 738
FKQAL+IRNPK+RLKRIYD ++EPVKK RGGCGAQQP IT
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQD-TDEPVKK-RGGCGAQQPNIT 178
Query: 739 IDGMKMVAEYKAXXXXXXXXXXLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYA 918
+DGMKMVAE+KA LPEPVERKQ LSAERVL+VLKRISDEDCLLLGLNPKYA
Sbjct: 179 VDGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 238
Query: 919 RPDWMILQXXXXXXXXXXXXXMMDTSSRSEDDLTHQLAMIIRHNDNLKRQEKNGAPAHII 1098
RPDWMILQ MMDTSSRSEDDLTHQLAMIIRHN+NL+RQE+NGAPAHII
Sbjct: 239 RPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 298
Query: 1099 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 1278
TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 299 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 358
Query: 1279 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 1458
RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 359 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 418
Query: 1459 REDGQRLDLRFLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 1638
REDGQRLDLR++KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 419 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 478
Query: 1639 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 1818
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 479 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 538
Query: 1819 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 1998
TLLGCRKITKRDT IEKDVFMNILMWW+DFDGKIPAPAILKPRP+WTGKQVFNLIIPKQI
Sbjct: 539 TLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQI 598
Query: 1999 NLIRTSAWHSESERGFITPGDTQVRIEKGEVLSGTLCKRTLGSSNGSLIHVIWEEVGPDA 2178
NLIR SAWHSE E+GFITPGDT VRIEKGE+LSGTLCK++LG+ GSLIH+IWEEVGPDA
Sbjct: 599 NLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDA 658
Query: 2179 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2358
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TM+ IN+TI KAK++VKELIK A EKQ
Sbjct: 659 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQ 718
Query: 2359 LEAEPGRTMMDSFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2538
LEAEPGRTMM+SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 719 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 778
Query: 2539 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2718
TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 779 TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 838
Query: 2719 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 2898
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 839 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 898
Query: 2899 KLDSLKMKKAEFDHVYRYEIDDDNWNPSYMLQEHVEDLKTIREFRNVFDAEARKLEADRY 3078
KLDSLKMKK EFD+++RYE+DD+NW P+YML EHV+DLKTIREFRNVF+AE +KLEADRY
Sbjct: 899 KLDSLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRY 958
Query: 3079 QLGMEIATTGDSNWHLPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 3258
QLG EIATTGD++W +PVNLKRLIWNAQK F++D RRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 959 QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVV 1018
Query: 3259 PGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 3438
PGDD MS+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAP
Sbjct: 1019 PGDDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1078
Query: 3439 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 3618
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1079 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1138
Query: 3619 KPEVHGKKEMAKNVQCSLEYTTLRSVTHATEVWYDPDPTSTIIEEDVEFVKSYYEMPDEE 3798
KPEV+ KKE+AKNVQC+LEYTTLRSVTHATE+WYDPDP TIIEED EFV+SYYEMPDE+
Sbjct: 1139 KPEVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDED 1198
Query: 3799 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKIGHEFGDDLTCIFNDDNAEKLILRIRI 3978
+ P+KISPWLLRIELNREMMVDKKLSMADIA+KI EF DDL+CIFNDDNA+KLILRIRI
Sbjct: 1199 IDPDKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNADKLILRIRI 1258
Query: 3979 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQGKINKFDQEEGFK 4158
ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK+GK+N F Q+EGFK
Sbjct: 1259 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFK 1318
Query: 4159 SESEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 4338
+ +EWMLDTEGVNLLAV+CHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1319 AANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1378
Query: 4339 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEAD 4518
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D
Sbjct: 1379 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1438
Query: 4519 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPVSGT 4698
HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY+EGLDFGMTP+RSP+SGT
Sbjct: 1439 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGT 1498
Query: 4699 PYHEGMMSPSYLLSPNARSSPI-TDAQFSPYVGGMGF 4806
PYHEGMMSPSYLLSPN R+SPI TDA FSPYVG M F
Sbjct: 1499 PYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535
>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 2756 bits (7145), Expect = 0.0
Identities = 1363/1537 (88%), Positives = 1438/1537 (93%), Gaps = 1/1537 (0%)
Frame = +1
Query: 199 MDMRFPYSPAEVAKVRTVQFGILSPDEIRQMSVTEILHAETMERGKPKVGGLSDSRLGTI 378
MD RFPYSPAEVAKV VQFGILSPDEIRQMSV +I HAETMERGKPK GGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAKVEFVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 379 DRKLKCETCSANMAECPGHFGHLELAKPMFHIGFMKTVLAIMRCVCFNCSKILADPDEPR 558
DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILAD DE +
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120
Query: 559 FKQALRIRNPKHRLKRIYDTXXXXXXXXXXXXXXXXXXXXSEEPVKKTRGGCGAQQPTIT 738
FKQAL+IRNPK+RLKRIYD ++EP+KK RGGCGAQQP IT
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQD-TDEPIKK-RGGCGAQQPNIT 178
Query: 739 IDGMKMVAEYKAXXXXXXXXXXLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYA 918
+DGMKMVAE+KA LPEPVERKQ LSAERVL+VLKRISDEDCLLLGLNPKYA
Sbjct: 179 VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 238
Query: 919 RPDWMILQXXXXXXXXXXXXXMMDTSSRSEDDLTHQLAMIIRHNDNLKRQEKNGAPAHII 1098
RPDWMILQ MMDTSSRSEDDLTHQLAMIIRHN+NL+RQE+NGAPAHII
Sbjct: 239 RPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 298
Query: 1099 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 1278
TEFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 299 TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 358
Query: 1279 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 1458
RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 359 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 418
Query: 1459 REDGQRLDLRFLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 1638
REDGQRLDLR++KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 419 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 478
Query: 1639 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 1818
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 479 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 538
Query: 1819 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 1998
TLLGCRKITKRDT IEKDVFMNILMWW+DFDGKIPAP ILKPRP+WTGKQVFNLIIPKQI
Sbjct: 539 TLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQI 598
Query: 1999 NLIRTSAWHSESERGFITPGDTQVRIEKGEVLSGTLCKRTLGSSNGSLIHVIWEEVGPDA 2178
NLIR SAWHSE E+GFITPGDT VRIEKGE+LSGTLCK++LG+ +GSLIHVIWEEVGPDA
Sbjct: 599 NLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDA 658
Query: 2179 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2358
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TME IN+TISKAKN VKELIK A EKQ
Sbjct: 659 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQ 718
Query: 2359 LEAEPGRTMMDSFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2538
LEAEPGRTMM+SFENRVNQVLNKARDDAGSSAQ SLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 719 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQM 778
Query: 2539 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2718
TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 779 TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 838
Query: 2719 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 2898
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 839 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 898
Query: 2899 KLDSLKMKKAEFDHVYRYEIDDDNWNPSYMLQEHVEDLKTIREFRNVFDAEARKLEADRY 3078
KLDSLKMKK EFD+V+RYE+DD+NW P+YML EHV+DLKTIREFRNVF+AE +KLEADRY
Sbjct: 899 KLDSLKMKKPEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRY 958
Query: 3079 QLGMEIATTGDSNWHLPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 3258
QLG EI TTGD++W +PVNLKRLIWNAQK FK+D RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 959 QLGSEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVV 1018
Query: 3259 PGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 3438
PGDD MS+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAP
Sbjct: 1019 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1078
Query: 3439 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 3618
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1079 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1138
Query: 3619 KPEVHGKKEMAKNVQCSLEYTTLRSVTHATEVWYDPDPTSTIIEEDVEFVKSYYEMPDEE 3798
KP+V+ KKE+AKNVQC+LEYTTLRSVTHATE+WYDPDP TIIEED EFV+SYYEMPDE+
Sbjct: 1139 KPQVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDTEFVQSYYEMPDED 1198
Query: 3799 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKIGHEFGDDLTCIFNDDNAEKLILRIRI 3978
+ P+KISPWLLRIELNREMMVDKKLSMADIAEKI EF DDL+CIFNDDNA+KLILRIRI
Sbjct: 1199 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRI 1258
Query: 3979 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQGKINKFDQEEGFK 4158
ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK+GK+N F Q++GFK
Sbjct: 1259 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDDGFK 1318
Query: 4159 SESEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 4338
+ +EWMLDTEGVNLLAV+CHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1319 AANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1378
Query: 4339 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEAD 4518
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D
Sbjct: 1379 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1438
Query: 4519 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPVSGT 4698
HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY+EGLDFGMTP+RSP++GT
Sbjct: 1439 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPITGT 1498
Query: 4699 PYHEGMMSPSYLLSPNARSSPI-TDAQFSPYVGGMGF 4806
PYHEGMMSPSYLLSPN R+SPI TDA FSPYVG M F
Sbjct: 1499 PYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535
>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 2742 bits (7107), Expect = 0.0
Identities = 1354/1537 (88%), Positives = 1434/1537 (93%), Gaps = 1/1537 (0%)
Frame = +1
Query: 199 MDMRFPYSPAEVAKVRTVQFGILSPDEIRQMSVTEILHAETMERGKPKVGGLSDSRLGTI 378
MD RFPYSPAEVAKV+ VQFGILSPDEIRQMSV I HAETMERGK K GGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI 60
Query: 379 DRKLKCETCSANMAECPGHFGHLELAKPMFHIGFMKTVLAIMRCVCFNCSKILADPDEPR 558
DRK+KC+TC A MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILAD +E +
Sbjct: 61 DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEEETK 120
Query: 559 FKQALRIRNPKHRLKRIYDTXXXXXXXXXXXXXXXXXXXXSEEPVKKTRGGCGAQQPTIT 738
FKQAL+IRNPKHRL+RIYD ++EPVKK R GCGAQQP IT
Sbjct: 121 FKQALKIRNPKHRLRRIYDACKSKKICAGGDELDVQDQQDTDEPVKK-RSGCGAQQPNIT 179
Query: 739 IDGMKMVAEYKAXXXXXXXXXXLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYA 918
+DGMKMVAE+KA LPEPVERKQ LSAERVL+VLKRISDEDCLLLGLNPKYA
Sbjct: 180 VDGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 239
Query: 919 RPDWMILQXXXXXXXXXXXXXMMDTSSRSEDDLTHQLAMIIRHNDNLKRQEKNGAPAHII 1098
RPDWMILQ MMDTSSRSEDDLTHQLAMIIRHN+NL++QE+NGAPAHII
Sbjct: 240 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHII 299
Query: 1099 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 1278
TEFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300 TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359
Query: 1279 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 1458
RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360 RTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419
Query: 1459 REDGQRLDLRFLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 1638
REDGQRLDLR++KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479
Query: 1639 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 1818
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 480 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 539
Query: 1819 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 1998
TLLGCRKITKRDT IEKDVFMNILMWWEDFDGK+PAPAIL+PRP+WTGKQVFNLIIPK I
Sbjct: 540 TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLI 599
Query: 1999 NLIRTSAWHSESERGFITPGDTQVRIEKGEVLSGTLCKRTLGSSNGSLIHVIWEEVGPDA 2178
NLIR SAWH+E+E GFITPGDT VRIEKGE+LSGTLCK+TLG+S GSLIHVIWEEVGPDA
Sbjct: 600 NLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659
Query: 2179 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2358
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETI AKN+VKELIK AQEK
Sbjct: 660 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKN 719
Query: 2359 LEAEPGRTMMDSFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2538
LE EPGRTMM+SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720 LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779
Query: 2539 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2718
TACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780 TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839
Query: 2719 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 2898
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 840 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899
Query: 2899 KLDSLKMKKAEFDHVYRYEIDDDNWNPSYMLQEHVEDLKTIREFRNVFDAEARKLEADRY 3078
KLDSLKMKKAEFD+V+RYE+DD+NW P+YML +HV+DLKTIREFRNVF+AE +KLEADR
Sbjct: 900 KLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRL 959
Query: 3079 QLGMEIATTGDSNWHLPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 3258
QLG EI TTGD+ W +PVNLKRLIWNAQK FK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960 QLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019
Query: 3259 PGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 3438
PGDD MS+EAQKNATLFFNILLRSTFASKRVLKEYRLT+E+FEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 1079
Query: 3439 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 3618
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139
Query: 3619 KPEVHGKKEMAKNVQCSLEYTTLRSVTHATEVWYDPDPTSTIIEEDVEFVKSYYEMPDEE 3798
KPEV KKE+AKNVQC+LEYTTLRSVTHATE+WYDPDP TIIEEDVEFV+SYYEMPDE+
Sbjct: 1140 KPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199
Query: 3799 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKIGHEFGDDLTCIFNDDNAEKLILRIRI 3978
+ P+KISPWLLRIELNREMMVDKKLSMADIAEKI HEF DDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259
Query: 3979 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQGKINKFDQEEGFK 4158
ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+NKFD+ EGFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNKFDESEGFK 1319
Query: 4159 SESEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 4338
++EWMLDTEGVNLLAV+CHEDVD+TRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379
Query: 4339 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEAD 4518
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439
Query: 4519 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPVSGT 4698
+LRGVTENIMLGQLAPIGTGGC LYLNDQMLQQAIELQLPSY+EGLD+GMTP+RSP+S T
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLDYGMTPARSPMSAT 1499
Query: 4699 PYHE-GMMSPSYLLSPNARSSPITDAQFSPYVGGMGF 4806
PY + GMMSP +LSPN R+SPITDAQFSPYVGGM F
Sbjct: 1500 PYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534
>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 2732 bits (7083), Expect = 0.0
Identities = 1351/1538 (87%), Positives = 1435/1538 (93%), Gaps = 2/1538 (0%)
Frame = +1
Query: 199 MDMRFPYSPAEVAKVRTVQFGILSPDEIRQMSVTEILHAETMERGKPKVGGLSDSRLGTI 378
MD RFPYSPAEVAKV+ VQFGILSPDEIRQMSV I +AETME+GK K GGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEYAETMEKGKAKPGGLSDPRLGTI 60
Query: 379 DRKLKCETCSANMAECPGHFGHLELAKPMFHIGFMKTVLAIMRCVCFNCSKILADPDEPR 558
DRK+KC+TC A MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILAD D+ +
Sbjct: 61 DRKVKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDAK 120
Query: 559 FKQALRIRNPKHRLKRIYDTXXXXXXXXXXXXXXXXXXXXSEEPVKKTRGGCGAQQPTIT 738
FKQAL+IRNPK++L+RIYD ++EPVKK RGGCGAQQP IT
Sbjct: 121 FKQALKIRNPKNKLRRIYDACKSKKICAGGDDLEVEDQQDTDEPVKKKRGGCGAQQPNIT 180
Query: 739 IDGMKMVAEYKAXXXXXXXXXXLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYA 918
+DGMKMVAE+K LPEPVERKQ LSAERVL+VLKRISDEDCLLLGLNPK+A
Sbjct: 181 VDGMKMVAEFKQTKKKNDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 240
Query: 919 RPDWMILQXXXXXXXXXXXXXMMDTSSRSEDDLTHQLAMIIRHNDNLKRQEKNGAPAHII 1098
RPDWMILQ MMDTSSRSEDDLTHQLAMIIRHN+NL+RQE+NGAPAHII
Sbjct: 241 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 300
Query: 1099 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 1278
TEFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301 TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
Query: 1279 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 1458
RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 361 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
Query: 1459 REDGQRLDLRFLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 1638
REDGQRLDLR++KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 421 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
Query: 1639 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 1818
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 481 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540
Query: 1819 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 1998
TLLGCRKITKRDT IEKDVFMNILMWWEDFDGK+PAPAILKPRP+WTGKQVFNLIIPK I
Sbjct: 541 TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKLI 600
Query: 1999 NLIRTSAWHSESERGFITPGDTQVRIEKGEVLSGTLCKRTLGSSNGSLIHVIWEEVGPDA 2178
NLIR SAWH+ESE GFITPGDT VRIEKGE+LSGTLCK+TLG+ GSLIHVIWEEVGPDA
Sbjct: 601 NLIRFSAWHAESESGFITPGDTMVRIEKGELLSGTLCKKTLGTGTGSLIHVIWEEVGPDA 660
Query: 2179 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2358
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TMEKINETISKAK++V ELIK AQ+K
Sbjct: 661 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKSEVTELIKQAQDKL 720
Query: 2359 LEAEPGRTMMDSFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2538
LE EPGRTMM+SFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 721 LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
Query: 2539 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2718
TACVGQQNVEGKRIP+GF+DRTLPHFTK+DYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781 TACVGQQNVEGKRIPFGFVDRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
Query: 2719 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 2898
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ
Sbjct: 841 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 900
Query: 2899 KLDSLKMKKAEFDHVYRYEIDDDNWNPSYMLQEHVEDLKTIREFRNVFDAEARKLEADRY 3078
KLDSLKMKKAEFD+VYRYE+DD+NW P+YML EHV+DLKTIREFRNVF+AE +KLEADR
Sbjct: 901 KLDSLKMKKAEFDNVYRYELDDENWRPTYMLPEHVDDLKTIREFRNVFEAEVQKLEADRL 960
Query: 3079 QLGMEIATTGDSNWHLPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 3258
QLG EI TTGD++W +PVNLKRLIWNAQK FK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 QLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1020
Query: 3259 PGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 3438
PGDD MS+EAQKNATLFFNILLRSTFASKRVLKEYRLT+E+FEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 1080
Query: 3439 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 3618
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1140
Query: 3619 KPEVHGKKEMAKNVQCSLEYTTLRSVTHATEVWYDPDPTSTIIEEDVEFVKSYYEMPDEE 3798
KPEV KKE+AKNVQC+LEYTTLRSVTHATE+WYDPDP TIIEED++FVKSYYEMPDE+
Sbjct: 1141 KPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDMDFVKSYYEMPDED 1200
Query: 3799 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKIGHEFGDDLTCIFNDDNAEKLILRIRI 3978
+ P+KISPWLLRIELNREMMVDKKLSMADIAEKI HEF DDL+CIFNDDNA+KLILR+RI
Sbjct: 1201 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1260
Query: 3979 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQGKINKFDQEEGFK 4158
ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKINKFD+ +GFK
Sbjct: 1261 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKINKFDENDGFK 1320
Query: 4159 SESEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 4338
++EWMLDTEGVNLLAV+CHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1321 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
Query: 4339 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEAD 4518
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1440
Query: 4519 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLDF-GMTPSRSPVSG 4695
+LRGVTENIMLGQLAPIGTGGC LYLNDQMLQQAIELQLPSY+EGL++ GMTP+R+ SG
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLEYIGMTPARASPSG 1500
Query: 4696 TPYHE-GMMSPSYLLSPNARSSPITDAQFSPYVGGMGF 4806
TPYH+ GMMSP +LSPN RSSPI+DAQFSPYVGGM F
Sbjct: 1501 TPYHDGGMMSP--MLSPNFRSSPISDAQFSPYVGGMAF 1536