BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00000939
         (1063 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|2...   358   1e-96
ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus c...   348   1e-93
ref|NP_001041935.1| Os01g0132800 [Oryza sativa Japonica Group] g...   347   3e-93
gb|EEC69884.1| hypothetical protein OsI_00266 [Oryza sativa Indi...   345   8e-93
ref|NP_001104963.1| chloroplastic group IIB intron splicing faci...   345   1e-92

>ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|222848787|gb|EEE86334.1|
           predicted protein [Populus trichocarpa]
          Length = 244

 Score =  358 bits (919), Expect = 1e-96
 Identities = 167/213 (78%), Positives = 193/213 (90%)
 Frame = +2

Query: 113 ILASIPDPAEHAQEEYTPWLIVGLGNPGNKYYGTRHNVGFEMVDRIARDERIPLNTIQSK 292
           + AS+PD A   + EYTPWLIVGLGNPG KY+GTRHNVGFEM+DRIA+ E + +NTIQSK
Sbjct: 32  VRASLPDNANGVKVEYTPWLIVGLGNPGTKYHGTRHNVGFEMIDRIAQAEGVLMNTIQSK 91

Query: 293 ALLGIGSIGEVPILLVKPQAYMNYSGESVGSLAAYYKVPLRHILLIYDEMSLPNGVLRFQ 472
           AL+GIG IGEVPILL KPQAYMN+SGESVG LAA+YK+PLRHILLIYDEM+LPNG+LR Q
Sbjct: 92  ALIGIGCIGEVPILLAKPQAYMNFSGESVGPLAAHYKIPLRHILLIYDEMNLPNGILRVQ 151

Query: 473 PKGGHGHHNGVKSVIEHLDGSREFPRLCIGIGNPPGSMDMRAFLLQKFSPTERDQVDSAL 652
           PKGGHGHHNGVKSV++HLDG REFPRLCIGIGNPPG+MDM+AFLLQKFSPTER+Q+D++L
Sbjct: 152 PKGGHGHHNGVKSVMDHLDGCREFPRLCIGIGNPPGTMDMKAFLLQKFSPTEREQIDASL 211

Query: 653 EQGVDAVRTLVLKGFSTNINRFNLVQKYKYHKV 751
           EQGV+A+RTL+L GF+  I RFNL QKYKYHKV
Sbjct: 212 EQGVEAMRTLILGGFTNKITRFNLGQKYKYHKV 244


>ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]
           gi|223544111|gb|EEF45636.1| peptidyl-tRNA hydrolase,
           putative [Ricinus communis]
          Length = 253

 Score =  348 bits (894), Expect = 1e-93
 Identities = 173/238 (72%), Positives = 196/238 (82%), Gaps = 9/238 (3%)
 Frame = +2

Query: 65  RRGLHLSKRTPTRRRRILASIPDPAEH-AQEEYTPWLIVGLGNPGNKYYGTRHNV----- 226
           R      +   + R  I  S+P+     A+ EYTPWLIVGLGNPGNKY+GTRHNV     
Sbjct: 16  RNSFFRPRHLASTRLSIRVSLPENGNGVAKIEYTPWLIVGLGNPGNKYHGTRHNVTNASL 75

Query: 227 ---GFEMVDRIARDERIPLNTIQSKALLGIGSIGEVPILLVKPQAYMNYSGESVGSLAAY 397
              GFEM+D+IA+ E + +NTIQSKAL+GIG I EVPILLVKPQAYMN+SGESVG LAA+
Sbjct: 76  DLVGFEMIDKIAKAEAVAMNTIQSKALIGIGCIKEVPILLVKPQAYMNFSGESVGPLAAH 135

Query: 398 YKVPLRHILLIYDEMSLPNGVLRFQPKGGHGHHNGVKSVIEHLDGSREFPRLCIGIGNPP 577
           Y+VPLRHILLIYDEMSLPNGV+R QPKGGHGHHNGVKSV+EHLDG REFPRLCIGIGNPP
Sbjct: 136 YQVPLRHILLIYDEMSLPNGVMRLQPKGGHGHHNGVKSVMEHLDGCREFPRLCIGIGNPP 195

Query: 578 GSMDMRAFLLQKFSPTERDQVDSALEQGVDAVRTLVLKGFSTNINRFNLVQKYKYHKV 751
           G+MDMRAFLLQKFS TER+Q+D+AL QG+DAVRTLVL GF+ NI RFNL QKYKYHKV
Sbjct: 196 GTMDMRAFLLQKFSSTEREQIDAALGQGIDAVRTLVLSGFNQNITRFNLGQKYKYHKV 253


>ref|NP_001041935.1| Os01g0132800 [Oryza sativa Japonica Group]
           gi|75288538|sp|Q5ZCL8.1|CRS2_ORYSJ RecName:
           Full=Chloroplastic group IIB intron splicing facilitator
           CRS2, chloroplastic; AltName: Full=CRS2-like protein;
           AltName: Full=Chloroplastic RNA splicing factor 2;
           Flags: Precursor gi|53792159|dbj|BAD52792.1| putative
           peptidyl-tRNA hydrolase [Oryza sativa Japonica Group]
           gi|113531466|dbj|BAF03849.1| Os01g0132800 [Oryza sativa
           Japonica Group] gi|215687059|dbj|BAG90905.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|222617682|gb|EEE53814.1| hypothetical protein
           OsJ_00257 [Oryza sativa Japonica Group]
          Length = 259

 Score =  347 bits (890), Expect = 3e-93
 Identities = 174/236 (73%), Positives = 199/236 (84%), Gaps = 6/236 (2%)
 Frame = +2

Query: 62  QRRGLHLSKRTPTRRRR------ILASIPDPAEHAQEEYTPWLIVGLGNPGNKYYGTRHN 223
           +RR L LS   P RR R      ++AS+PDPA    E YTPWLI GLGNPG+KY+GTRHN
Sbjct: 25  RRRRLLLSAAAPLRRTRLRRRIAVVASVPDPAARPAE-YTPWLIAGLGNPGSKYHGTRHN 83

Query: 224 VGFEMVDRIARDERIPLNTIQSKALLGIGSIGEVPILLVKPQAYMNYSGESVGSLAAYYK 403
           VGFEMVDRIARDE I +NTIQSK+LLGIGSIGEVP+LLVKPQ+Y+NYSGE++G LAAYY+
Sbjct: 84  VGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQ 143

Query: 404 VPLRHILLIYDEMSLPNGVLRFQPKGGHGHHNGVKSVIEHLDGSREFPRLCIGIGNPPGS 583
           VPLRHIL++YDEMSLPNGVLR Q KGGHG HNG+++V+E LD SRE PRL IGIG+PPG 
Sbjct: 144 VPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGK 203

Query: 584 MDMRAFLLQKFSPTERDQVDSALEQGVDAVRTLVLKGFSTNINRFNLVQKYKYHKV 751
           MD RAFLLQKFS  ER Q+D+ALEQGVDAVRTLVLKGFS +I RFNLVQKYK+H V
Sbjct: 204 MDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259


>gb|EEC69884.1| hypothetical protein OsI_00266 [Oryza sativa Indica Group]
          Length = 259

 Score =  345 bits (886), Expect = 8e-93
 Identities = 173/236 (73%), Positives = 199/236 (84%), Gaps = 6/236 (2%)
 Frame = +2

Query: 62  QRRGLHLSKRTPTRRRR------ILASIPDPAEHAQEEYTPWLIVGLGNPGNKYYGTRHN 223
           +RR L LS   P RR R      ++AS+PDPA    E YTPWLI GLGNPG+KY+GTRHN
Sbjct: 25  RRRRLLLSAAAPLRRTRLRRRIAVVASVPDPAARPAE-YTPWLIAGLGNPGSKYHGTRHN 83

Query: 224 VGFEMVDRIARDERIPLNTIQSKALLGIGSIGEVPILLVKPQAYMNYSGESVGSLAAYYK 403
           VGFEMVDRIARDE I +NTIQSK+LLGIGSIGEVP+LLVKPQ+Y+NYSGE++G LAAYY+
Sbjct: 84  VGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQ 143

Query: 404 VPLRHILLIYDEMSLPNGVLRFQPKGGHGHHNGVKSVIEHLDGSREFPRLCIGIGNPPGS 583
           VPLRHIL++YDEMSLPNGVLR Q KGGHG HNG+++V+E LD SRE PRL IGIG+PPG 
Sbjct: 144 VPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGK 203

Query: 584 MDMRAFLLQKFSPTERDQVDSALEQGVDAVRTLVLKGFSTNINRFNLVQKYKYHKV 751
           MD RAFLLQKFS  E+ Q+D+ALEQGVDAVRTLVLKGFS +I RFNLVQKYK+H V
Sbjct: 204 MDTRAFLLQKFSSEEQLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259


>ref|NP_001104963.1| chloroplastic group IIB intron splicing facilitator CRS2,
           chloroplastic precursor [Zea mays]
           gi|75312019|sp|Q9M5P4.1|CRS2_MAIZE RecName:
           Full=Chloroplastic group IIB intron splicing facilitator
           CRS2, chloroplastic; AltName: Full=Chloroplastic RNA
           splicing factor 2; AltName: Full=Protein CHLOROPLAST RNA
           SPLICING 2; Flags: Precursor
           gi|6752919|gb|AAF27939.1|AF225708_1 CRS2 [Zea mays]
          Length = 256

 Score =  345 bits (884), Expect = 1e-92
 Identities = 166/213 (77%), Positives = 189/213 (88%)
 Frame = +2

Query: 113 ILASIPDPAEHAQEEYTPWLIVGLGNPGNKYYGTRHNVGFEMVDRIARDERIPLNTIQSK 292
           +++S+PDPA     EYTPWLI GLGNPGNKYYGTRHNVGFEMVDRIA +E I +NTIQSK
Sbjct: 45  VVSSVPDPAA-GPVEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSK 103

Query: 293 ALLGIGSIGEVPILLVKPQAYMNYSGESVGSLAAYYKVPLRHILLIYDEMSLPNGVLRFQ 472
           +LLGIGSIGEVP+L+VKPQ+YMNYSGE++G LAAYY+VPLRHILLIYD+ SLPNGVLR Q
Sbjct: 104 SLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQ 163

Query: 473 PKGGHGHHNGVKSVIEHLDGSREFPRLCIGIGNPPGSMDMRAFLLQKFSPTERDQVDSAL 652
            KGGHG HNG+++VIEHLDG REFPRL IGIG+PPG MD RAFLLQKFS  ER Q+D+AL
Sbjct: 164 KKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTAL 223

Query: 653 EQGVDAVRTLVLKGFSTNINRFNLVQKYKYHKV 751
           EQGVDAVRTLVLKGFS +  RFNLVQKYK+H+V
Sbjct: 224 EQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256