BLASTX nr result
ID: Dioscorea21_contig00000886
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00000886
(1165 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Goss... 139 9e-59
gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides] 139 7e-58
ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [P... 139 7e-58
ref|XP_002519950.1| chlorophyll A/B binding protein, putative [R... 132 6e-57
ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein C... 139 2e-56
>gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 139 bits (351), Expect(2) = 9e-59
Identities = 65/68 (95%), Positives = 67/68 (98%)
Frame = -1
Query: 694 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 515
AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL
Sbjct: 123 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 182
Query: 514 VLAIAAEV 491
V+A+ AEV
Sbjct: 183 VVAVVAEV 190
Score = 115 bits (287), Expect(2) = 9e-59
Identities = 58/96 (60%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Frame = -2
Query: 1065 LGVSEIFGSPLNFNGATRXXXXXXXXXXXSKVVALFSXXXXXXXXXXXPTFV--DEELAK 892
LGVSE+ G+PLNF+G R K VALFS DEELAK
Sbjct: 13 LGVSEMLGNPLNFSGGARSSAPTPSNSSIFKTVALFSKKKAAPPKPKAAAVAPADEELAK 72
Query: 891 WYGPDRRIYLPEGLLDRSEVPEYLNGEVPGDYGYDP 784
WYGPDRRI+LPEGLLDRSE+PEYLNGEVPGDYGYDP
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDP 108
>gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 139 bits (350), Expect(2) = 7e-58
Identities = 65/68 (95%), Positives = 67/68 (98%)
Frame = -1
Query: 694 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 515
A+ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL
Sbjct: 122 AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 181
Query: 514 VLAIAAEV 491
VLA+ AEV
Sbjct: 182 VLAVVAEV 189
Score = 112 bits (280), Expect(2) = 7e-58
Identities = 57/95 (60%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Frame = -2
Query: 1065 LGVSEIFGSPLNFNGATRXXXXXXXXXXXSKVVALFSXXXXXXXXXXXPTF-VDEELAKW 889
LGVSE+ G+PLNF+GATR K VALFS D ELAKW
Sbjct: 13 LGVSEMLGNPLNFSGATRSASPAATTPATFKTVALFSKKKAAPKPKPSAVSPADVELAKW 72
Query: 888 YGPDRRIYLPEGLLDRSEVPEYLNGEVPGDYGYDP 784
YGPDRRI+LP+GLLDRSE+PEYL GEVPGDYGYDP
Sbjct: 73 YGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDP 107
Score = 59.3 bits (142), Expect = 2e-06
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = -3
Query: 353 ILKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 261
+LKVKEIKNGRLAMFAMLGFFLQAYVTG+ P
Sbjct: 230 LLKVKEIKNGRLAMFAMLGFFLQAYVTGDVP 260
>ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus
trichocarpa] gi|222870973|gb|EEF08104.1|
light-harvesting complex II protein Lhcb5 [Populus
trichocarpa]
Length = 290
Score = 139 bits (350), Expect(2) = 7e-58
Identities = 65/68 (95%), Positives = 67/68 (98%)
Frame = -1
Query: 694 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 515
A+ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL
Sbjct: 122 AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 181
Query: 514 VLAIAAEV 491
VLA+ AEV
Sbjct: 182 VLAVVAEV 189
Score = 112 bits (280), Expect(2) = 7e-58
Identities = 57/95 (60%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Frame = -2
Query: 1065 LGVSEIFGSPLNFNGATRXXXXXXXXXXXSKVVALFSXXXXXXXXXXXPTF-VDEELAKW 889
LGVSE+ G+PLNF+GATR K VALFS D ELAKW
Sbjct: 13 LGVSEMLGNPLNFSGATRSASPAASTPATFKTVALFSKKKPAPKPKPSAVSPADVELAKW 72
Query: 888 YGPDRRIYLPEGLLDRSEVPEYLNGEVPGDYGYDP 784
YGPDRRI+LP+GLLDRSE+PEYL GEVPGDYGYDP
Sbjct: 73 YGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDP 107
Score = 115 bits (289), Expect = 2e-23
Identities = 56/61 (91%), Positives = 59/61 (96%)
Frame = -3
Query: 353 ILKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFGNNLLTVISGGAERAPT 174
+LKVKEIKNGRLAMFAMLGFF QAYVTGEGPVENLAKHLSDPFGNNLLTVI+G AERAP+
Sbjct: 230 LLKVKEIKNGRLAMFAMLGFFFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPS 289
Query: 173 L 171
L
Sbjct: 290 L 290
>ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding
protein, putative [Ricinus communis]
Length = 292
Score = 132 bits (333), Expect(2) = 6e-57
Identities = 61/68 (89%), Positives = 65/68 (95%)
Frame = -1
Query: 694 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 515
AYELIHARWAMLGAAGFI+PEAFNKFGANCGPEAVWFKTGALLLDG TLNYFG +IPINL
Sbjct: 124 AYELIHARWAMLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSIPINL 183
Query: 514 VLAIAAEV 491
V+A+ AEV
Sbjct: 184 VVAVIAEV 191
Score = 115 bits (289), Expect(2) = 6e-57
Identities = 60/97 (61%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
Frame = -2
Query: 1065 LGVSEIFGSPLNFNGATRXXXXXXXXXXXSKVVALFSXXXXXXXXXXXPTFV---DEELA 895
LGVSE+ G+PLNF+GATR K VALFS P V D+ELA
Sbjct: 13 LGVSEMLGNPLNFSGATRSAAPTSSTPSTLKTVALFSKKKAAPPPKAKPAAVSPVDDELA 72
Query: 894 KWYGPDRRIYLPEGLLDRSEVPEYLNGEVPGDYGYDP 784
KWYGPDRRI+LPEGLLDRSE+PEYL GEVPGDYGYDP
Sbjct: 73 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 109
Score = 116 bits (290), Expect = 1e-23
Identities = 56/61 (91%), Positives = 59/61 (96%)
Frame = -3
Query: 353 ILKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFGNNLLTVISGGAERAPT 174
ILKVKEIKNGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPFGNNLLTV++G AERAPT
Sbjct: 232 ILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVLAGSAERAPT 291
Query: 173 L 171
L
Sbjct: 292 L 292
>ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera] gi|147770824|emb|CAN76428.1|
hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product
[Vitis vinifera]
Length = 290
Score = 139 bits (349), Expect(2) = 2e-56
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = -1
Query: 694 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 515
AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL
Sbjct: 122 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 181
Query: 514 VLAIAAEV 491
+ A+ AEV
Sbjct: 182 IFAVVAEV 189
Score = 107 bits (268), Expect(2) = 2e-56
Identities = 57/96 (59%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Frame = -2
Query: 1065 LGVSEIFGSPLNFNGATRXXXXXXXXXXXSKVVALFSXXXXXXXXXXXPTF--VDEELAK 892
LGVSE+ G+PLNF+GA+R K VALFS DEELAK
Sbjct: 13 LGVSEMLGNPLNFSGASRTAPSASSPATF-KTVALFSKKKAAPAKAKPAPVSPADEELAK 71
Query: 891 WYGPDRRIYLPEGLLDRSEVPEYLNGEVPGDYGYDP 784
WYGPDRRI+LPEGLLDRSE+P YL GEVPGDYGYDP
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDP 107
Score = 115 bits (287), Expect = 3e-23
Identities = 56/61 (91%), Positives = 59/61 (96%)
Frame = -3
Query: 353 ILKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFGNNLLTVISGGAERAPT 174
+LKVKEIKNGRLAMFAMLGFF+QAYVTGEGPVENLA HLSDPFGNNLLTVI+G AERAPT
Sbjct: 230 LLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAAHLSDPFGNNLLTVIAGTAERAPT 289
Query: 173 L 171
L
Sbjct: 290 L 290