BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dioscorea21_contig00000034
         (7276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_051161.1| polyprotein [Japanese yam mosaic virus] gi|6277...  4324   0.0  
dbj|BAA36278.1| polyprotein [Japanese yam mosaic virus]              4313   0.0  
gb|AFK82573.1| polyprotein [Narcissus late season yellows virus]     2712   0.0  
dbj|BAJ08151.1| polyprotein [Turnip mosaic virus]                    2687   0.0  
dbj|BAF31180.1| polyprotein [Turnip mosaic virus]                    2683   0.0  

>ref|NP_051161.1| polyprotein [Japanese yam mosaic virus] gi|6277343|dbj|BAA86288.1|
            polyprotein [Japanese yam mosaic virus]
          Length = 3132

 Score = 4324 bits (11215), Expect = 0.0
 Identities = 2132/2398 (88%), Positives = 2234/2398 (93%), Gaps = 1/2398 (0%)
 Frame = +1

Query: 85   MAVCIETLAVINSSNTSTFQLQFGTLPPVTIGAFVTSSETTAMEKEQKKENHVKSTEPRK 264
            MA C+  LA  + +NT  FQLQFGTLPPV IG   TS +T A +K  +     KSTE +K
Sbjct: 1    MATCVGKLAETSLNNTIAFQLQFGTLPPVFIGIPATSCKTIATDKNDEHVIQSKSTEAQK 60

Query: 265  EVNAN-KAFINNMQSEYIKQCAVLDKWEREYNKNRNKSPESYKIVLTKQQKKAMLKRSVE 441
            ++N N KAFI+ M +EY KQCAVLDKWE EYN  R+ +P SYK+VLTKQQK A+ + ++E
Sbjct: 61   KMNVNNKAFIHKMHAEYNKQCAVLDKWEEEYNTTRSTNPSSYKVVLTKQQKSAVHRYNME 120

Query: 442  RAHKKLKEQNDILDRCIIGPWGPPTNAFSIASGPLPSAMEEQIKWPLHKTHSKRIKKAPR 621
            +A KKLKEQ DIL++CIIGPWGP  NAFSIASGPLPSAME ++KWPLH+T S+RIK  P+
Sbjct: 121  KARKKLKEQEDILNKCIIGPWGPSMNAFSIASGPLPSAMEAELKWPLHQTRSQRIKGTPK 180

Query: 622  QPIELGQEKFKKFIRELTTLMIEKQFTLELCDKSMQRVSIQKQRRRFYLKMNTMHEKGFN 801
            QP+ LG+ +F KF++ LTTLM +K   LELC K + RV ++++ ++ YLK+NT HE+GFN
Sbjct: 181  QPVTLGRGEFAKFVKNLTTLMTQKSLLLELCGKHVHRVCVRREHKKVYLKINTKHEEGFN 240

Query: 802  RARDIVMDRFTQRMLEFMVVCTSGNNKHSVRNIKPGNSGFVLSRRNLHGAQSRAYGEIFI 981
            +ARD+VMD FTQR+LE M+  TSGNN+HSV+NIKPG+SGFVL+R  L G QSRAYG +FI
Sbjct: 241  KARDVVMDNFTQRLLELMITRTSGNNRHSVQNIKPGHSGFVLNRETLCGTQSRAYGRVFI 300

Query: 982  IRGNHEGKLYDARIKLSKTIRRKITHYSDPGAKFWNGFNTAFQKHRKQDREHTCETDLDV 1161
            +RGNHEGKLYDARIKLS+TIRRKI  ++DPG KFWNGFNTAFQ++RKQDREHTCETDLDV
Sbjct: 301  VRGNHEGKLYDARIKLSQTIRRKIVRFADPGVKFWNGFNTAFQRYRKQDREHTCETDLDV 360

Query: 1162 EECGEVAALLCLALFPCGGITCNRCVEENLLSEGQATHENILRKQQEIRQIVFKQHPQFK 1341
            EECGEVAALLCLALFPCG ITCN+CVEENLLSEGQATHENIL+KQQEIR IV ++HPQFK
Sbjct: 361  EECGEVAALLCLALFPCGKITCNKCVEENLLSEGQATHENILKKQQEIRHIVLQRHPQFK 420

Query: 1342 HALQILERQGKALQSVNKNYKDFTEIHSLSEGKTLSAFSYANRINDVLIKGGSATADELS 1521
            HALQILERQ KALQSVN NYKDFTEIHSLSEGKTL AFS ANRINDVLIKGGSATA+ELS
Sbjct: 421  HALQILERQSKALQSVNSNYKDFTEIHSLSEGKTLPAFSQANRINDVLIKGGSATAEELS 480

Query: 1522 EATRNLLEIVRYLKNREESLEKGTLKTFRNKISQKAHLNPALMCDNQLDENGNFVWGERG 1701
            EATRNLLEIVRYLKNR ES EKGTLKTFRNK SQKAHLNPALMCDNQLDENGNFVWGERG
Sbjct: 481  EATRNLLEIVRYLKNRTESSEKGTLKTFRNKTSQKAHLNPALMCDNQLDENGNFVWGERG 540

Query: 1702 YHAKRFLNNYFEIVNPSKGYIQFEARTNPRGQRKTAITRLIVPTNFEVLREQMQGESIGE 1881
            YHAKRF N YFEIV+PSKGY +FEAR NPRGQRKTAITRLIVPTNFEVLREQMQGESIGE
Sbjct: 541  YHAKRFFNKYFEIVDPSKGYAKFEARINPRGQRKTAITRLIVPTNFEVLREQMQGESIGE 600

Query: 1882 HPLTVECTSTLNGDFLFSCCCVTNEAGEPILSELQMPTKNHLVVGNSGDSKYVDMPQHEG 2061
            HPLTVECTS LNGDFLF CCCVTNEAGEPILSELQMPTKNHLVVGNSGDSKYVDMP  EG
Sbjct: 601  HPLTVECTSVLNGDFLFPCCCVTNEAGEPILSELQMPTKNHLVVGNSGDSKYVDMPPQEG 660

Query: 2062 QYMYIAKAGYCYMNIFLAMLVNVRKEEAKAFTKMVRDVLINQLGTWPTLLDVASACYLLK 2241
            Q MYIAKAG+CYMNIFLAMLVNVRKEEAKAFTKMVRDVLINQLGTWPTLLDVASACYLLK
Sbjct: 661  QSMYIAKAGFCYMNIFLAMLVNVRKEEAKAFTKMVRDVLINQLGTWPTLLDVASACYLLK 720

Query: 2242 VFFPDVSGAELPRIMIDHKTKTMHVIDSYGSLNTGYHILKANTVEQLIKFTRAGLKSDMK 2421
            VFFPDVS AELPRIM+DHKTKTMHV+DSYGSLNTGYHILKANTVEQLIKFTRAGLKSDMK
Sbjct: 721  VFFPDVSSAELPRIMVDHKTKTMHVVDSYGSLNTGYHILKANTVEQLIKFTRAGLKSDMK 780

Query: 2422 HYLVGGPILNNEDIDPIEYRTPSWHLKRLIKGIYNPQVLLDDIRIDRYLPLYALLSPGVL 2601
            HYLVGGPILNNEDIDP EYRTPSWHL+RLIKGIYNPQVLLDDIRIDRYLPLYALLSPGVL
Sbjct: 781  HYLVGGPILNNEDIDPTEYRTPSWHLRRLIKGIYNPQVLLDDIRIDRYLPLYALLSPGVL 840

Query: 2602 IAMYNSASLEILTREYLRKDDEFVAIVLILESLARKVSVSTSLMSQLMLIEGEAQYIIEA 2781
            IAMYNSASLEILTREYLRKDDEFV+IVLILESLARKVSVSTSLMSQLMLIEGEAQYIIEA
Sbjct: 841  IAMYNSASLEILTREYLRKDDEFVSIVLILESLARKVSVSTSLMSQLMLIEGEAQYIIEA 900

Query: 2782 VQGIKQRYPIPYTVVMEMLIILASRSESDAALDAAGFKKFQRESIQLMEKNYLRILEDEW 2961
            VQGIKQRYPIPYTVVMEMLIILASRSESDAALDAAGFKKFQRESIQLMEKNYLRILEDEW
Sbjct: 901  VQGIKQRYPIPYTVVMEMLIILASRSESDAALDAAGFKKFQRESIQLMEKNYLRILEDEW 960

Query: 2962 RGLSLRQKFSATLRSSKFSIHTRGGLRNGSIEDLGGRYSESMNFYFGEFKNGAGKMYAKF 3141
            R LSLRQ+FSATLRSSKF++ T GGLRN SIEDLGGRYSESMN+YFGE KNG  K+Y K 
Sbjct: 961  RELSLRQRFSATLRSSKFAMRTHGGLRNASIEDLGGRYSESMNYYFGELKNGVMKIYGKI 1020

Query: 3142 KTQVKAITQNTHTSIKRRIYSCFNYFIPDVFKFINVMVCLTMILTLMQELHTMVERARNC 3321
              Q K ITQ+THTSIKR++YSCFNY IPDV KFINVMVCLTMILTLMQELHTMVER RNC
Sbjct: 1021 TNQAKVITQSTHTSIKRKVYSCFNYLIPDVSKFINVMVCLTMILTLMQELHTMVERTRNC 1080

Query: 3322 KRLARRFENQEKEQKIKFMHQAFQNEHKADPTFEEFLEYLGKYTPELLTYFQEDEVVVHQ 3501
            KR+ARRFENQEKE KIKFMHQAFQNEHK DPTFEEFLEYLGK+TPELLTYFQEDEVVVHQ
Sbjct: 1081 KRIARRFENQEKEHKIKFMHQAFQNEHKVDPTFEEFLEYLGKHTPELLTYFQEDEVVVHQ 1140

Query: 3502 AKRRGELELERVVAFIALVMMVFDSERSDCVVKILNKLKNIISSTDADVYHQGLAEIEDD 3681
            AKRRGELELERVVAFIALVMMVFDSERSDCVVKILNKLKNIISSTDADVYHQGL+EIEDD
Sbjct: 1141 AKRRGELELERVVAFIALVMMVFDSERSDCVVKILNKLKNIISSTDADVYHQGLSEIEDD 1200

Query: 3682 INEKNLTIDFELSQDSIRTPPNVMEHTFNTWWNHQVSNGRTIPHYRTEGHFMTFTRANAH 3861
            INEKNLTIDFELSQD +RTPPNVMEHTF+TWW HQVSNGRTIPHYRTEGHFMTFTRANAH
Sbjct: 1201 INEKNLTIDFELSQDGVRTPPNVMEHTFSTWWTHQVSNGRTIPHYRTEGHFMTFTRANAH 1260

Query: 3862 HVATEIATSDHKDIMLMGAVGSGKSTGLPFHLSKRGKVLLVEPTRPLAENVYRQLSHEPF 4041
            HVATEIAT++HKDIMLMGAVGSGKSTGLPFHLSKRGKVLLVEPTRPLAENVYRQLSHEPF
Sbjct: 1261 HVATEIATNEHKDIMLMGAVGSGKSTGLPFHLSKRGKVLLVEPTRPLAENVYRQLSHEPF 1320

Query: 4042 YINATLLMRGLTTCGSSPVTIMTSGFALNQLAHNRHRIAEYDFVIFDECHVHDANAMALR 4221
            YINATLLMRGLTTCGSSPVTIMTSGFALNQLAHNRHRIAEYDFVIFDECHVHDANAMALR
Sbjct: 1321 YINATLLMRGLTTCGSSPVTIMTSGFALNQLAHNRHRIAEYDFVIFDECHVHDANAMALR 1380

Query: 4222 CLLHDAEFSGKIIKVSATPPGREVEFTTQHPVXXXXXXXXXXXXFVDAQGTGANCDVIRY 4401
            CLLHDAEF GK+IKVSATPPGREVEFTTQHPV            FVDAQGTG NCDVIR+
Sbjct: 1381 CLLHDAEFPGKVIKVSATPPGREVEFTTQHPVKLLTEETLGLKEFVDAQGTGVNCDVIRH 1440

Query: 4402 GDNILVYVASYNEVDIISKALIDKGYKVTKVDGRTMKVGKVEIITSGTPQRKHFVVATNI 4581
            GDNILVYVAS NEVDIISKALIDKG+KVTKVDGRTMKVGKVEIITSGTPQRKHFVVATNI
Sbjct: 1441 GDNILVYVASCNEVDIISKALIDKGHKVTKVDGRTMKVGKVEIITSGTPQRKHFVVATNI 1500

Query: 4582 IENGVTLDIEVVVDFGTKVIPFLDVDNRMMQYQKVAINYGERIQRLGRVGRHKAGTALRI 4761
            IENGVTLDIEVVVDFGTKV+PFLDVDNRMMQYQKVAINYGERIQRLGRVGRHKAGTALRI
Sbjct: 1501 IENGVTLDIEVVVDFGTKVVPFLDVDNRMMQYQKVAINYGERIQRLGRVGRHKAGTALRI 1560

Query: 4762 GHTERGLSEVPSCIATEAAFRCFTFGLPVITNNVTTSLLSNATVRQARTMAHFELSPFYT 4941
            GHTERGLSEVPSCIATEAAFRCFTFGLPVITNNVTTSLLSNATVRQARTMAHFELSPFYT
Sbjct: 1561 GHTERGLSEVPSCIATEAAFRCFTFGLPVITNNVTTSLLSNATVRQARTMAHFELSPFYT 1620

Query: 4942 YHFVRYDGTMHPEIHKVFKRFKLRDSEIVLNKTAIPNRGINTWMTSSAYQRLGANVGDSN 5121
            YHFVRYDGTMHPEIHKV KRFKLRDSEIVLNKTAIPNRG+NTWMTSSAYQRLGANVGDSN
Sbjct: 1621 YHFVRYDGTMHPEIHKVLKRFKLRDSEIVLNKTAIPNRGVNTWMTSSAYQRLGANVGDSN 1680

Query: 5122 EVRIPFLCKDIPETLHETIWDIITTYKSDAGFGRLSSASACKVAYTLKTDVMSIQRTIHI 5301
            E+RIPFLCK++PETLHETIWDIITT+KSDAGFGRLSSASACKVAYTLKTDVMSIQRTIHI
Sbjct: 1681 EIRIPFLCKEVPETLHETIWDIITTHKSDAGFGRLSSASACKVAYTLKTDVMSIQRTIHI 1740

Query: 5302 IDALIVEERQKQEYFRXXXXXXXXXXXXXXXXXXXAIRARFSSDHTVENISVLENAKAQL 5481
            IDALIVEERQKQEYFR                   AIRARFSSDHTVENISVLENAKAQL
Sbjct: 1741 IDALIVEERQKQEYFRTITTNSISSSNFSLQSIANAIRARFSSDHTVENISVLENAKAQL 1800

Query: 5482 CEFKNLNIDAAFQDFDSQVGRNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDI 5661
            CEFKNLNIDAAFQDFDSQVGR+YISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDI
Sbjct: 1801 CEFKNLNIDAAFQDFDSQVGRSYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDI 1860

Query: 5662 MIMIGVLLGGLMMVYKQFRNQMSEEVYHEAKGKXXXXXXXXXXXXXNKLGREVYGDDGTM 5841
            MIMIGVLLGGLMMVYKQF++QM+EEV+HEAKGK             +KLGREVYGDDGTM
Sbjct: 1861 MIMIGVLLGGLMMVYKQFKSQMTEEVHHEAKGKRQRQRLRFRDARDSKLGREVYGDDGTM 1920

Query: 5842 EHYFGEAYTKKGKTSGRTHGMGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITD 6021
            EHYFGEAYTKKGKTSGR HGMGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITD
Sbjct: 1921 EHYFGEAYTKKGKTSGRKHGMGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITD 1980

Query: 6022 LHLVQEHFTKIRSEMIESGELESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCAN 6201
            LHLVQEHFTKIRSEMIESGELESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCAN
Sbjct: 1981 LHLVQEHFTKIRSEMIESGELESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCAN 2040

Query: 6202 KPTIAGFPEREYELRQTGQPKAISLKDVPKANDLSELVQHESASLHRGLRDYNPISNNIC 6381
            KPTIAGFPEREYELRQTGQPKAISLKDVPKANDLSE+VQHESASLHRGLRDYNPISNNIC
Sbjct: 2041 KPTIAGFPEREYELRQTGQPKAISLKDVPKANDLSEMVQHESASLHRGLRDYNPISNNIC 2100

Query: 6382 KLVNRSEGERDTMYGLGFGPIIITNRHLFEHNGGELDIKTRHGDFLITNMTKLQLYPVPN 6561
            KL+NRSEGERDTMYGLGFGP+IITNRHLFEHNGGELDIKTRHGDFLITNMTKLQLYPVPN
Sbjct: 2101 KLINRSEGERDTMYGLGFGPVIITNRHLFEHNGGELDIKTRHGDFLITNMTKLQLYPVPN 2160

Query: 6562 RDLILIRLPKDIPPFPQKLQFRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHF 6741
            RDLILIRLPKDIPPFPQKLQFRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHF
Sbjct: 2161 RDLILIRLPKDIPPFPQKLQFRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHF 2220

Query: 6742 WKHWITTKDGQCGLPLVSTRDGNIVGIHSLGSFNNTINYFASFPENFVNQYLLTPENHHW 6921
            WKHWITTKDGQCGLPLVSTRDGNIVGIHSLGSFNNTINYFASFPENFVNQYLLTPENH W
Sbjct: 2221 WKHWITTKDGQCGLPLVSTRDGNIVGIHSLGSFNNTINYFASFPENFVNQYLLTPENHQW 2280

Query: 6922 IQHWKYNTDNISWGALKISNEAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLK 7101
            IQHWKYNTDNISWGALKISNEAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLK
Sbjct: 2281 IQHWKYNTDNISWGALKISNEAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLK 2340

Query: 7102 AIASCPNQLVKKHVVKGKCPMFDMYLKLDEEGRKFFTPLLGQYQKSRLNREAYIKDIM 7275
            AIASCPNQLV KHVVKGKCPMFDMYLKLDE GRKFFTPLLGQYQKSRLN+EAYIKDIM
Sbjct: 2341 AIASCPNQLVSKHVVKGKCPMFDMYLKLDEAGRKFFTPLLGQYQKSRLNKEAYIKDIM 2398


>dbj|BAA36278.1| polyprotein [Japanese yam mosaic virus]
          Length = 3130

 Score = 4313 bits (11185), Expect = 0.0
 Identities = 2126/2397 (88%), Positives = 2226/2397 (92%)
 Frame = +1

Query: 85   MAVCIETLAVINSSNTSTFQLQFGTLPPVTIGAFVTSSETTAMEKEQKKENHVKSTEPRK 264
            MA+CIE L   N S++  FQLQFGTLPPVTI     S+  TAME + K     K T+ ++
Sbjct: 1    MAICIEKLTNPNLSDSPVFQLQFGTLPPVTISV-TDSTNVTAMETDLKPGKQNKPTDAQR 59

Query: 265  EVNANKAFINNMQSEYIKQCAVLDKWEREYNKNRNKSPESYKIVLTKQQKKAMLKRSVER 444
            +VN NKAFI +M SEY KQC  LDKWE EYNK R+  P SYK+V T+QQ+KAMLKRS+E+
Sbjct: 60   KVNDNKAFIQSMHSEYTKQCTTLDKWEEEYNKARSMRPNSYKLVQTRQQRKAMLKRSMEK 119

Query: 445  AHKKLKEQNDILDRCIIGPWGPPTNAFSIASGPLPSAMEEQIKWPLHKTHSKRIKKAPRQ 624
              K+LKEQ DIL++C+IGPWGPP N FSIA+GPLPSAME + KWPLH+T S+RIKK+  +
Sbjct: 120  TSKQLKEQTDILEKCVIGPWGPPMNTFSIAAGPLPSAMETEKKWPLHQTRSQRIKKSQMR 179

Query: 625  PIELGQEKFKKFIRELTTLMIEKQFTLELCDKSMQRVSIQKQRRRFYLKMNTMHEKGFNR 804
            P++L Q  FKK +RELTTLM+ K  T ELCDK  Q+VS+ ++ ++ YLK++TMHEKGFNR
Sbjct: 180  PVKLDQGGFKKLVRELTTLMMLKSATFELCDKHTQKVSVCRRHKKIYLKVHTMHEKGFNR 239

Query: 805  ARDIVMDRFTQRMLEFMVVCTSGNNKHSVRNIKPGNSGFVLSRRNLHGAQSRAYGEIFII 984
            ARD+ ++ F Q +LE MV  TSGNN HSVR+IKPG SGFV++R+ LHGAQSRAYGEIFII
Sbjct: 240  ARDVKIENFAQHILELMVARTSGNNWHSVRDIKPGYSGFVINRKTLHGAQSRAYGEIFII 299

Query: 985  RGNHEGKLYDARIKLSKTIRRKITHYSDPGAKFWNGFNTAFQKHRKQDREHTCETDLDVE 1164
            RGNHEGKLYDARIKLS TIRRKITHYSDPG KFW GF+TAFQ++RKQDREHTCETDLDVE
Sbjct: 300  RGNHEGKLYDARIKLSSTIRRKITHYSDPGVKFWKGFDTAFQRYRKQDREHTCETDLDVE 359

Query: 1165 ECGEVAALLCLALFPCGGITCNRCVEENLLSEGQATHENILRKQQEIRQIVFKQHPQFKH 1344
            ECGEVAALLCLALFPCG ITCN+CVEENLLSEGQATHENILRKQQEIRQIVF++HPQFKH
Sbjct: 360  ECGEVAALLCLALFPCGKITCNKCVEENLLSEGQATHENILRKQQEIRQIVFQRHPQFKH 419

Query: 1345 ALQILERQGKALQSVNKNYKDFTEIHSLSEGKTLSAFSYANRINDVLIKGGSATADELSE 1524
            ALQILERQ KALQSVN NYKDFTEIHSLSEGKTLSAFS+A+RINDVLIKGGSATA+ELSE
Sbjct: 420  ALQILERQSKALQSVNSNYKDFTEIHSLSEGKTLSAFSHASRINDVLIKGGSATAEELSE 479

Query: 1525 ATRNLLEIVRYLKNREESLEKGTLKTFRNKISQKAHLNPALMCDNQLDENGNFVWGERGY 1704
            ATRNLLEIVRYLKNR ES EKGTLKTFRNKISQKAHLNPALMCDNQLDENGNFVWGERGY
Sbjct: 480  ATRNLLEIVRYLKNRMESSEKGTLKTFRNKISQKAHLNPALMCDNQLDENGNFVWGERGY 539

Query: 1705 HAKRFLNNYFEIVNPSKGYIQFEARTNPRGQRKTAITRLIVPTNFEVLREQMQGESIGEH 1884
            HAKRF N YFEIV+PSKGY +FE R NPRGQRKTAITRLIVPTNFEVLREQMQGESIGEH
Sbjct: 540  HAKRFFNKYFEIVDPSKGYEKFETRINPRGQRKTAITRLIVPTNFEVLREQMQGESIGEH 599

Query: 1885 PLTVECTSTLNGDFLFSCCCVTNEAGEPILSELQMPTKNHLVVGNSGDSKYVDMPQHEGQ 2064
            PLTVECTS LNGDFLFSCCCVTNE+GEPILSELQMPTKNHLVVGNSGDSKYVDMP  +GQ
Sbjct: 600  PLTVECTSVLNGDFLFSCCCVTNESGEPILSELQMPTKNHLVVGNSGDSKYVDMPPQDGQ 659

Query: 2065 YMYIAKAGYCYMNIFLAMLVNVRKEEAKAFTKMVRDVLINQLGTWPTLLDVASACYLLKV 2244
             MYIAKAGYCYMNIFLAMLVNVRKEEAKAFTKMVRDVLINQLGTWP+LLDVASACYLLKV
Sbjct: 660  SMYIAKAGYCYMNIFLAMLVNVRKEEAKAFTKMVRDVLINQLGTWPSLLDVASACYLLKV 719

Query: 2245 FFPDVSGAELPRIMIDHKTKTMHVIDSYGSLNTGYHILKANTVEQLIKFTRAGLKSDMKH 2424
            FFPDVSGAELPRIM+DHKTKTMHVIDSYGSLNTGYHILKANTVEQLIKFTRAGLKSDMKH
Sbjct: 720  FFPDVSGAELPRIMVDHKTKTMHVIDSYGSLNTGYHILKANTVEQLIKFTRAGLKSDMKH 779

Query: 2425 YLVGGPILNNEDIDPIEYRTPSWHLKRLIKGIYNPQVLLDDIRIDRYLPLYALLSPGVLI 2604
            YL+GGP+LNNEDIDPIEYRTPSWHLKRLIKGIYNPQVLLDDIRIDRYLPLYALLSPGVLI
Sbjct: 780  YLIGGPVLNNEDIDPIEYRTPSWHLKRLIKGIYNPQVLLDDIRIDRYLPLYALLSPGVLI 839

Query: 2605 AMYNSASLEILTREYLRKDDEFVAIVLILESLARKVSVSTSLMSQLMLIEGEAQYIIEAV 2784
            AMYNSASLEILTREY+RKDDEFVAIVLILESLARKVSVSTSL+SQL LIEGEAQYIIEAV
Sbjct: 840  AMYNSASLEILTREYMRKDDEFVAIVLILESLARKVSVSTSLLSQLTLIEGEAQYIIEAV 899

Query: 2785 QGIKQRYPIPYTVVMEMLIILASRSESDAALDAAGFKKFQRESIQLMEKNYLRILEDEWR 2964
            QGIKQRYPIPYTVVMEMLIILASRSESDAALDAAGFKKFQRES+QLMEKNYLRILEDEWR
Sbjct: 900  QGIKQRYPIPYTVVMEMLIILASRSESDAALDAAGFKKFQRESVQLMEKNYLRILEDEWR 959

Query: 2965 GLSLRQKFSATLRSSKFSIHTRGGLRNGSIEDLGGRYSESMNFYFGEFKNGAGKMYAKFK 3144
            GLS RQKFSA LRSSKF+IHTRGGL N SIEDLGGRY ESM+ YFGE KNGA     K  
Sbjct: 960  GLSWRQKFSAILRSSKFAIHTRGGLHNKSIEDLGGRYGESMSSYFGELKNGAANACKKLT 1019

Query: 3145 TQVKAITQNTHTSIKRRIYSCFNYFIPDVFKFINVMVCLTMILTLMQELHTMVERARNCK 3324
            TQ K ITQ+THT+IKRR+YSCFNYFIPDVFKFINVMVCLTMILTLMQELHTM+ER RNCK
Sbjct: 1020 TQAKTITQSTHTNIKRRLYSCFNYFIPDVFKFINVMVCLTMILTLMQELHTMIERTRNCK 1079

Query: 3325 RLARRFENQEKEQKIKFMHQAFQNEHKADPTFEEFLEYLGKYTPELLTYFQEDEVVVHQA 3504
            R+ARRFENQEKE KIKFMHQAFQNEHK DPTFEEFLEYLGKYTPELLTYFQEDEVVVHQA
Sbjct: 1080 RIARRFENQEKEHKIKFMHQAFQNEHKTDPTFEEFLEYLGKYTPELLTYFQEDEVVVHQA 1139

Query: 3505 KRRGELELERVVAFIALVMMVFDSERSDCVVKILNKLKNIISSTDADVYHQGLAEIEDDI 3684
            KRRGELELER+VAFIALVMMVFDSERSDCVVKILNKLKNIIS TDADVYHQ L+EIEDDI
Sbjct: 1140 KRRGELELERIVAFIALVMMVFDSERSDCVVKILNKLKNIISPTDADVYHQALSEIEDDI 1199

Query: 3685 NEKNLTIDFELSQDSIRTPPNVMEHTFNTWWNHQVSNGRTIPHYRTEGHFMTFTRANAHH 3864
            NEKNLTIDFELSQD +RTPPNV EHTF+TWW HQ+SNGRTIPHYRTEGHFMTFTRANAHH
Sbjct: 1200 NEKNLTIDFELSQDGVRTPPNVTEHTFSTWWAHQLSNGRTIPHYRTEGHFMTFTRANAHH 1259

Query: 3865 VATEIATSDHKDIMLMGAVGSGKSTGLPFHLSKRGKVLLVEPTRPLAENVYRQLSHEPFY 4044
            VATEIATS+HKDIMLMGAVGSGKSTGLPFHLSKRGKVLLVEPTRPLAENVYRQLSHEPFY
Sbjct: 1260 VATEIATSEHKDIMLMGAVGSGKSTGLPFHLSKRGKVLLVEPTRPLAENVYRQLSHEPFY 1319

Query: 4045 INATLLMRGLTTCGSSPVTIMTSGFALNQLAHNRHRIAEYDFVIFDECHVHDANAMALRC 4224
            INATLLMRGLTTCGSSPVTIMTSGFALNQLAHNRHRIAEYDFVIFDECHVHDANAMALRC
Sbjct: 1320 INATLLMRGLTTCGSSPVTIMTSGFALNQLAHNRHRIAEYDFVIFDECHVHDANAMALRC 1379

Query: 4225 LLHDAEFSGKIIKVSATPPGREVEFTTQHPVXXXXXXXXXXXXFVDAQGTGANCDVIRYG 4404
            LLHDAEF GKIIKVSATPPGREVEFTTQHPV            FVDAQGTGANCDV+RYG
Sbjct: 1380 LLHDAEFPGKIIKVSATPPGREVEFTTQHPVKLVTEETLGLKEFVDAQGTGANCDVVRYG 1439

Query: 4405 DNILVYVASYNEVDIISKALIDKGYKVTKVDGRTMKVGKVEIITSGTPQRKHFVVATNII 4584
            DNILVYVAS+NEVDIISKALIDKGYKVTKVDGRTMKVGKVEI TSGTPQRKHFVVATNII
Sbjct: 1440 DNILVYVASHNEVDIISKALIDKGYKVTKVDGRTMKVGKVEITTSGTPQRKHFVVATNII 1499

Query: 4585 ENGVTLDIEVVVDFGTKVIPFLDVDNRMMQYQKVAINYGERIQRLGRVGRHKAGTALRIG 4764
            ENGVTLDIEVVVDFGTKV+PFLDVDNRMMQYQKVAINYGERIQRLGRVGRHK+GTALRIG
Sbjct: 1500 ENGVTLDIEVVVDFGTKVVPFLDVDNRMMQYQKVAINYGERIQRLGRVGRHKSGTALRIG 1559

Query: 4765 HTERGLSEVPSCIATEAAFRCFTFGLPVITNNVTTSLLSNATVRQARTMAHFELSPFYTY 4944
            HTERGLSEVPSCIATEAAFRCFTFGLP ITNNVTTSLLSNATVRQARTMAHFELSPFYTY
Sbjct: 1560 HTERGLSEVPSCIATEAAFRCFTFGLPAITNNVTTSLLSNATVRQARTMAHFELSPFYTY 1619

Query: 4945 HFVRYDGTMHPEIHKVFKRFKLRDSEIVLNKTAIPNRGINTWMTSSAYQRLGANVGDSNE 5124
            HFVRYDGTMHPEIHKV KRFKLRDSEIVLNKTAIP+RG+NTWMTSS+YQRLGANVGDSNE
Sbjct: 1620 HFVRYDGTMHPEIHKVLKRFKLRDSEIVLNKTAIPSRGVNTWMTSSSYQRLGANVGDSNE 1679

Query: 5125 VRIPFLCKDIPETLHETIWDIITTYKSDAGFGRLSSASACKVAYTLKTDVMSIQRTIHII 5304
            VRIPFLCK++PETLHETIWDII  YKSDAGFGRLSSASACKVAYTLKTDVMSIQRTIHII
Sbjct: 1680 VRIPFLCKEVPETLHETIWDIIVKYKSDAGFGRLSSASACKVAYTLKTDVMSIQRTIHII 1739

Query: 5305 DALIVEERQKQEYFRXXXXXXXXXXXXXXXXXXXAIRARFSSDHTVENISVLENAKAQLC 5484
            DALI+EERQKQEYFR                   AIRARFSSDHT+ENISVLENAKAQLC
Sbjct: 1740 DALIIEERQKQEYFRTITTNSISSSSFSLQSIANAIRARFSSDHTIENISVLENAKAQLC 1799

Query: 5485 EFKNLNIDAAFQDFDSQVGRNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDIM 5664
            EFKNLNIDAAFQDFDSQVGRNYISNFGALDAVYHQSEKAMSEHFKLKGRWNK  ITRD+M
Sbjct: 1800 EFKNLNIDAAFQDFDSQVGRNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKSPITRDVM 1859

Query: 5665 IMIGVLLGGLMMVYKQFRNQMSEEVYHEAKGKXXXXXXXXXXXXXNKLGREVYGDDGTME 5844
            IMIGVLLGGLMMVYKQF+  MSEEVYHEAKGK             NKLGREVYGDDGTME
Sbjct: 1860 IMIGVLLGGLMMVYKQFKTYMSEEVYHEAKGKRQRQRLRFRDARDNKLGREVYGDDGTME 1919

Query: 5845 HYFGEAYTKKGKTSGRTHGMGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDL 6024
            HYFGEAYTKKGKTSGRTHGMGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDL
Sbjct: 1920 HYFGEAYTKKGKTSGRTHGMGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDL 1979

Query: 6025 HLVQEHFTKIRSEMIESGELESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANK 6204
            HLVQEHFTKIRS+MIESGELESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCAN+
Sbjct: 1980 HLVQEHFTKIRSDMIESGELESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANR 2039

Query: 6205 PTIAGFPEREYELRQTGQPKAISLKDVPKANDLSELVQHESASLHRGLRDYNPISNNICK 6384
            PTIAGFPEREYELRQTGQPKAISLKDVPK+NDLSE+VQHESA LHRGLRDYNPISNNICK
Sbjct: 2040 PTIAGFPEREYELRQTGQPKAISLKDVPKSNDLSEMVQHESALLHRGLRDYNPISNNICK 2099

Query: 6385 LVNRSEGERDTMYGLGFGPIIITNRHLFEHNGGELDIKTRHGDFLITNMTKLQLYPVPNR 6564
            L+NRSEGERDTMYG+GFGP+IITNRHLFEHNGGELDIKTRHGDFLI N TKLQLYPVPNR
Sbjct: 2100 LINRSEGERDTMYGIGFGPVIITNRHLFEHNGGELDIKTRHGDFLIANTTKLQLYPVPNR 2159

Query: 6565 DLILIRLPKDIPPFPQKLQFRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFW 6744
            DLILIRLPKDIPPFPQKLQFRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFW
Sbjct: 2160 DLILIRLPKDIPPFPQKLQFRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFW 2219

Query: 6745 KHWITTKDGQCGLPLVSTRDGNIVGIHSLGSFNNTINYFASFPENFVNQYLLTPENHHWI 6924
            KHWITTKDGQCGLPLVSTR GNIVGIHSLGS NNTINYFASFPENFV+QYLLTPENH WI
Sbjct: 2220 KHWITTKDGQCGLPLVSTRVGNIVGIHSLGSLNNTINYFASFPENFVSQYLLTPENHQWI 2279

Query: 6925 QHWKYNTDNISWGALKISNEAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKA 7104
            QHWKYNTDNISWGALKISNEAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKA
Sbjct: 2280 QHWKYNTDNISWGALKISNEAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKA 2339

Query: 7105 IASCPNQLVKKHVVKGKCPMFDMYLKLDEEGRKFFTPLLGQYQKSRLNREAYIKDIM 7275
            IASCPNQLV KHVVKGKCPMFDMYLKLDEEGRKFFTPLLGQYQKSRLNREAYIKDIM
Sbjct: 2340 IASCPNQLVTKHVVKGKCPMFDMYLKLDEEGRKFFTPLLGQYQKSRLNREAYIKDIM 2396


>gb|AFK82573.1| polyprotein [Narcissus late season yellows virus]
          Length = 3105

 Score = 2712 bits (7030), Expect = 0.0
 Identities = 1335/2333 (57%), Positives = 1711/2333 (73%), Gaps = 7/2333 (0%)
 Frame = +1

Query: 298  MQSEYIKQCAVLDKWEREYNKNRNKSPESYKIVLTKQQKKAMLK--RSVERAHKKLKEQN 471
            M+ E +++     KWE     ++  S +  +   T  + +   K  R  + A K L +  
Sbjct: 63   MEWEELQRDIAFRKWEAMRFGDKQGSKDRGETHKTSTEVEPTWKEMRKAQLAEKALVKS- 121

Query: 472  DILDRCIIGPWGPPTNAFSIASGPLPSAMEEQI--KWPLHKTHSKRIKKAPRQPIELGQE 645
              L  C  GPWGP TN  ++++         Q+  K PL+KT S+++ +A    ++L   
Sbjct: 122  --LQECHCGPWGPQTNGVALSTMRRTREQPPQVVEKVPLNKTRSRKVSRAKPDFVKLSTT 179

Query: 646  KFKKFIRELTTLMIEKQFTLELCDKSMQ-RVSIQKQRRRFYLKMNTMHEKGFNRARDIVM 822
            +   F ++L  +        E+ D+S   R+  +      Y + +  H  G  R  D+  
Sbjct: 180  QLNAFCKQLLKIASRYHKVTEVADRSKAIRLKFEYFNGGTYARAHVHHMDGRMRPVDVSS 239

Query: 823  DRFTQRMLEFMVVCTSGNNKHSVRNIKPGNSGFVLSRRNLHGAQSRAYGEIFIIRGNHEG 1002
              F  ++LE  +  TSGN  H+   I  G SG +L+R  LHG +       FI+RG    
Sbjct: 240  TPFIDKILESAMRVTSGNGAHTSDEITHGWSGLLLNRDKLHGIRIHKTRRSFIVRGKDGK 299

Query: 1003 KLYDARIKLSKTIRRKITHYSDPGAKFWNGFNTAFQKHRKQDREHTCETDLDVEECGEVA 1182
            +L DARI++S    +++ H+S PG KFW GFNTAF  +R  DREH CET+LDVEECG VA
Sbjct: 300  QLIDARIRVSTVRMKRMHHFSSPGEKFWKGFNTAFLTNRVYDREHVCETNLDVEECGTVA 359

Query: 1183 ALLCLALFPCGGITCNRCVEENLLSEGQATHENILRKQQEIRQIVFKQHPQFKHALQILE 1362
            A++CLA++PCG ITC +CV++N+ SEGQAT   I  K  +   IV ++HP F HAL I+E
Sbjct: 360  AIMCLAMYPCGRITCMKCVDDNINSEGQATQHKISEKVSKAIDIVREKHPSFTHALMIME 419

Query: 1363 RQGKALQSVNKNYKDFTEIHSLSEGKTLSAFSYANRINDVLIKGGSATADELSEATRNLL 1542
            R   +L  V+ NY  F EI  ++ G+ +SAF++ N++N +L+KG  AT  E  E   +LL
Sbjct: 420  RYMNSLADVSSNYDAFAEIQGITGGRNISAFAHLNKLNAILVKGPMATQVEFLEGMTHLL 479

Query: 1543 EIVRYLKNREESLEKGTLKTFRNKISQKAHLNPALMCDNQLDENGNFVWGERGYHAKRFL 1722
            E+ RY+KNR E++EKGTLK+FRNKISQKAH+NP LMCDNQLD+NGNF+WGERGYHAKRF 
Sbjct: 480  EVARYMKNRTENIEKGTLKSFRNKISQKAHINPTLMCDNQLDKNGNFIWGERGYHAKRFF 539

Query: 1723 NNYFEIVNPSKGYIQFEARTNPRGQRKTAITRLIVPTNFEVLREQMQGESIGEHPLTVEC 1902
             NYF++++P +GY ++E R NP G RK AI RL+VPTNFE LREQM+GE +   PLT EC
Sbjct: 540  GNYFDVIDPMEGYSKYEVRPNPNGTRKLAIGRLLVPTNFEALREQMRGECVKPQPLTKEC 599

Query: 1903 TSTLNGDFLFSCCCVTNEAGEPILSELQMPTKNHLVVGNSGDSKYVDMPQHEGQYMYIAK 2082
             S L GD+  +CCCVT + GEP+LS L+MPTK+HLV+GNSGDSKYVD+P  EG  MYIAK
Sbjct: 600  VSMLRGDYAHACCCVTTDGGEPLLSNLRMPTKHHLVIGNSGDSKYVDLPTTEGNKMYIAK 659

Query: 2083 AGYCYMNIFLAMLVNVRKEEAKAFTKMVRDVLINQLGTWPTLLDVASACYLLKVFFPDVS 2262
             GYCY+NIFLAMLVNV + +AKAFTKMVRDVLI++LGTWP+LLDVA+AC LLK FFPDVS
Sbjct: 660  NGYCYINIFLAMLVNVNESDAKAFTKMVRDVLIDKLGTWPSLLDVATACCLLKFFFPDVS 719

Query: 2263 GAELPRIMIDHKTKTMHVIDSYGSLNTGYHILKANTVEQLIKFTRAGLKSDMKHYLVGGP 2442
             AELPR+ +DH++KT+HVIDSYGS  TGYHILK NT+EQL+KFT  GL+SD+KHYLVGG 
Sbjct: 720  NAELPRMFVDHESKTIHVIDSYGSQTTGYHILKTNTIEQLVKFTEFGLESDLKHYLVGGD 779

Query: 2443 ILNNEDIDPIEYRTPSWHLKRLIKGIYNPQVLLDDIRIDRYLPLYALLSPGVLIAMYNSA 2622
             L  E  + I    P+W+LK L++GIY P V+ +++  +RYLPLYA+LSPG+L+A+YNS 
Sbjct: 780  PLAEETTEEI-LSDPNWNLKLLVQGIYKPSVMRENLIWNRYLPLYAMLSPGILLALYNSG 838

Query: 2623 SLEILTREYLRKDDEFVAIVLILESLARKVSVSTSLMSQLMLIEGEAQYIIEAVQGIKQR 2802
            SLE L + +L+KD++ V ++++LESLA+KVS S+S+++QL ++E  A ++IEAVQ +KQ+
Sbjct: 839  SLESLIKYFLQKDNDLVVLLVVLESLAQKVSKSSSVLAQLRILEHGAPHVIEAVQNVKQK 898

Query: 2803 YPIPYTVVMEMLIILASRSESDAALDAAGFKKFQRESIQLMEKNYLRILEDEWRGLSLRQ 2982
            + +PY  VM+ML++L++R+E++  LDAAG+ + +  SI++MEKNYL+ILED+W+ LS   
Sbjct: 899  HILPYNTVMKMLMVLSARAETNLELDAAGYNQIRLTSIEVMEKNYLQILEDQWKELSWSS 958

Query: 2983 KFSATLRSSKFSIHTRGGLRNGSIEDLGGRYSESMNFYFGEFKNGAG--KMYAKFKTQVK 3156
            K     RSSKF++ TR  L   S  DL GRYSES+  YFG+ +      K  A  + Q K
Sbjct: 959  KLLVIFRSSKFAMRTRKCLTPESTADLRGRYSESITSYFGQARQKLHDIKHCALLRFQEK 1018

Query: 3157 AITQNTHTSIKRRIYSCFNYFIPDVFKFINVMVCLTMILTLMQELHTMVERARNCKRLAR 3336
            A     +TS  RR  S  NY IPDV KFINV++ ++++L++ +E   ++   +  K  A 
Sbjct: 1019 AQAARMYTS--RRACSIINYMIPDVVKFINVLLVVSLLLSIAREFQRLLLAHKEMKSQAA 1076

Query: 3337 RFENQEKEQKIKFMHQAFQNEHKADPTFEEFLEYLGKYTPELLTYFQEDEVVVHQAKRRG 3516
            + +  +  Q+I  +++ +  EHK  PT E FL Y+ +  PELL YF++DE V HQ KRR 
Sbjct: 1077 QIKEDKDAQQINLLYKMYMMEHKETPTKEGFLAYIKEQQPELLEYFRQDEEVEHQVKRRS 1136

Query: 3517 ELELERVVAFIALVMMVFDSERSDCVVKILNKLKNIISSTDADVYHQGLAEIEDDINEKN 3696
            E ELE++VAFIAL++M+FDSERSDCV KILNKLKN++SS + DVYHQ L +I+D+++EKN
Sbjct: 1137 EQELEKIVAFIALILMMFDSERSDCVTKILNKLKNLMSSAEPDVYHQSLDDIQDELSEKN 1196

Query: 3697 LTIDFELSQDSIRTPPNVMEHTFNTWWNHQVSNGRTIPHYRTEGHFMTFTRANAHHVATE 3876
            LTIDFEL+QD  +T   + E TF  WW+ Q++ G T+PHYRTEGH +TFTR  A  VA +
Sbjct: 1197 LTIDFELAQDESQTQAPMRERTFQEWWDQQITRGTTVPHYRTEGHLVTFTRNTAAQVAND 1256

Query: 3877 IATSDHKDIMLMGAVGSGKSTGLPFHLSKRGKVLLVEPTRPLAENVYRQLSHEPFYINAT 4056
            IA  +  DI+LMGAVGSGKSTGLPF+LSK+G VLL+EPTRPLAENV++QL+ EPFY N T
Sbjct: 1257 IAHDNKTDILLMGAVGSGKSTGLPFYLSKKGNVLLLEPTRPLAENVHKQLAKEPFYTNTT 1316

Query: 4057 LLMRGLTTCGSSPVTIMTSGFALNQLAHNRHRIAEYDFVIFDECHVHDANAMALRCLLHD 4236
            L MRGLT  G++P+TIMT+GFAL+  AHNR R+ EYD++I DECHVHDANAMALRCL+HD
Sbjct: 1317 LRMRGLTIFGAAPITIMTTGFALHYFAHNRVRLNEYDYIILDECHVHDANAMALRCLIHD 1376

Query: 4237 AEFSGKIIKVSATPPGREVEFTTQHPVXXXXXXXXXXXXFVDAQGTGANCDVIRYGDNIL 4416
             +++GK+IK SATPPGRE+ F  QHPV            FV AQG+G+NCDV ++GDNIL
Sbjct: 1377 NQYNGKLIKASATPPGREITFDPQHPVNIIPEEILSLQGFVQAQGSGSNCDVTQHGDNIL 1436

Query: 4417 VYVASYNEVDIISKALIDKGYKVTKVDGRTMKVGKVEIITSGTPQRKHFVVATNIIENGV 4596
            VYVASY EVDI+S  L++K YKVTKVDGRTMK+GKVEI+T+GTP +KHFVVATNIIENGV
Sbjct: 1437 VYVASYGEVDILSALLLEKNYKVTKVDGRTMKIGKVEIVTNGTPNKKHFVVATNIIENGV 1496

Query: 4597 TLDIEVVVDFGTKVIPFLDVDNRMMQYQKVAINYGERIQRLGRVGRHKAGTALRIGHTER 4776
            TLD+EVVVDFGTKV+PFLD DNRMM Y KVAINYGERIQR+GRVGRHK G ALRIGHTE+
Sbjct: 1497 TLDVEVVVDFGTKVVPFLDCDNRMMCYNKVAINYGERIQRVGRVGRHKPGCALRIGHTEK 1556

Query: 4777 GLSEVPSCIATEAAFRCFTFGLPVITNNVTTSLLSNATVRQARTMAHFELSPFYTYHFVR 4956
            GLSEVPS IATEAAF+CFT+GLPVITNNV+TSLL++ATV QARTMA FEL+PFY  +FVR
Sbjct: 1557 GLSEVPSSIATEAAFKCFTYGLPVITNNVSTSLLAHATVPQARTMAQFELTPFYMVNFVR 1616

Query: 4957 YDGTMHPEIHKVFKRFKLRDSEIVLNKTAIPNRGINTWMTSSAYQRLGANVGDSNEVRIP 5136
            +DG+MHP +H +FK+FKLRDSEI LNK AIPN+G+  WMT + Y RLG  V D  ++RIP
Sbjct: 1617 FDGSMHPALHSLFKKFKLRDSEIFLNKLAIPNKGLRNWMTGAEYARLGCQVDDRQDIRIP 1676

Query: 5137 FLCKDIPETLHETIWDIITTYKSDAGFGRLSSASACKVAYTLKTDVMSIQRTIHIIDALI 5316
            F+CK IP+ LH  +W+ IT +K+DAGFGRL+SASACK+AYTL+TD+ +IQRT+ IID LI
Sbjct: 1677 FVCKGIPDKLHTEVWETITKFKADAGFGRLTSASACKIAYTLQTDITAIQRTVRIIDTLI 1736

Query: 5317 VEERQKQEYFRXXXXXXXXXXXXXXXXXXXAIRARFSSDHTVENISVLENAKAQLCEFKN 5496
             EER KQEYF+                   AIR+RF+SDHT ENI VLE AKAQLCEF+N
Sbjct: 1737 AEERVKQEYFKTVTSNVVSSSNFSLQSISNAIRSRFASDHTRENIGVLEAAKAQLCEFRN 1796

Query: 5497 LNIDAAFQDFDSQVGRNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDIMIMIG 5676
            LN+D +F   +  V +N+I +FGAL++V HQS   +S    +KGRWN  LITRD++++ G
Sbjct: 1797 LNMDHSFTRINDTVSQNFIRDFGALESVQHQSTHDVSRCLGIKGRWNTSLITRDVLVLAG 1856

Query: 5677 VLLGGLMMVYKQFRNQMSEEVYHEAKGKXXXXXXXXXXXXXNKLGREVYGDDGTMEHYFG 5856
            VL GG+ M+   +    SE V+HEAKGK             NK GREVYGDDGT+EHYFG
Sbjct: 1857 VLGGGIWMLLSHYATAASEIVHHEAKGKRQQQKLKFRQARDNKNGREVYGDDGTIEHYFG 1916

Query: 5857 EAYTKKGKTSGRTHGMGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQ 6036
             AY +KGK +G+  GMG KQR+FVNMY FDPEDFSAVRFVD LTGATLDE P TD+HLVQ
Sbjct: 1917 AAYREKGKVAGKVRGMGAKQRRFVNMYGFDPEDFSAVRFVDPLTGATLDENPNTDIHLVQ 1976

Query: 6037 EHFTKIRSEMIESGELESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANKPTIA 6216
            EHFT IR E I   EL+ Q +    G+ AYY+NNRTGKAL+VDLTPHNPL  C  K TIA
Sbjct: 1977 EHFTLIREEKIGQDELDVQRVRMSPGIEAYYINNRTGKALKVDLTPHNPLRSCDKKATIA 2036

Query: 6217 GFPEREYELRQTGQPKAISLKDVPKANDLSELVQHESASLHRGLRDYNPISNNICKLVNR 6396
            GFPERE+ELRQTG PK I +++VPK  D    V HES SL +GLRDYNPI++++CKL N 
Sbjct: 2037 GFPEREFELRQTGAPKPIRMEEVPKEQD-DAGVNHESESLFKGLRDYNPIASSVCKLTNN 2095

Query: 6397 SEGERDTMYGLGFGPIIITNRHLFEHNGGELDIKTRHGDFLITNMTKLQLYPVPNRDLIL 6576
            S+G  D++Y +GF P+I+TNRHLFE N G L I+TR+GDFLI N T+L L+P+P+RDLIL
Sbjct: 2096 SDGHTDSLYSVGFDPLILTNRHLFERNNGTLLIQTRNGDFLIRNTTQLNLFPIPDRDLIL 2155

Query: 6577 IRLPKDIPPFPQKLQFRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWI 6756
            +RLPKD+P FPQ+L FR P  NE+ICMVGSNFQAKSV++ VSE+S  L +   +FWKHWI
Sbjct: 2156 VRLPKDVPRFPQRLIFRSPVDNERICMVGSNFQAKSVSSLVSESSTTLHVKGSNFWKHWI 2215

Query: 6757 TTKDGQCGLPLVSTRDGNIVGIHSLGSFNNTINYFASFPENFVNQYLLTPENHHWIQHWK 6936
            +TKDGQCG P+VSTRDG I+G+HSL +F ++ NYF SFPE F  QYL T +NH W +HWK
Sbjct: 2216 STKDGQCGTPIVSTRDGAILGLHSLSNFAHSTNYFTSFPEEFTKQYLDTHDNHEWAKHWK 2275

Query: 6937 YNTDNISWGALKISNEAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASC 7116
            YNTD+ISWG+L I    P GLFKT+KL+ DL+   V  QM R  W+  Q+ GNLKAIAS 
Sbjct: 2276 YNTDSISWGSLNIKAAQPKGLFKTSKLVMDLDDTAVYSQMSRGGWMRDQIYGNLKAIASV 2335

Query: 7117 PNQLVKKHVVKGKCPMFDMYLKLDEEGRKFFTPLLGQYQKSRLNREAYIKDIM 7275
            PNQLV KH VKGKC MFD+YL+L E+ R+FFTP+LG YQKSRLNREAY KD++
Sbjct: 2336 PNQLVTKHTVKGKCQMFDLYLRLHEDAREFFTPMLGFYQKSRLNREAYAKDLL 2388


>dbj|BAJ08151.1| polyprotein [Turnip mosaic virus]
          Length = 3164

 Score = 2687 bits (6966), Expect = 0.0
 Identities = 1328/2404 (55%), Positives = 1739/2404 (72%), Gaps = 11/2404 (0%)
 Frame = +1

Query: 97   IETLAVINSSNTSTFQLQFGTLPPVTI-GAFVTSSETTAMEKEQKKENHVKSTEPRKEVN 273
            I T  V   +    + +QFG+L PV + G   +S++ T  +   K++ +++ T   +   
Sbjct: 38   IVTTVVTPVAQPKLYTVQFGSLDPVVVKGVAGSSAKETRQQLNVKEDVNLRGTAALEVAK 97

Query: 274  ANKAFINNMQSEYIKQCAVLDKWEREYNKNRNKSPESYKIVLTKQQKKAMLKRSV-ERAH 450
               +    MQ E  K+ A+  + E +  +      E+ KI++T +    ++ RS  E  H
Sbjct: 98   PQPSIEERMQEEARKERAIFQELENKLGRRPYGIAENEKIIMTARGFSKIVPRSKKEMKH 157

Query: 451  KKLKEQNDILDRCIIGPWGPPTNAFSIASGPLPSAMEEQ---IKWPLHKTHSKRIKKAPR 621
            K+ KE+ + L + ++  W    +  SI  GP  +AME +   IK PLHKT S + KK   
Sbjct: 158  KRTKERRN-LQQSVVLEWDSTVSKISIGGGPSANAMEAEAVRIKRPLHKTPSMK-KKTVH 215

Query: 622  QPIELGQEKFKKFIRELTTLMIEKQFTLELCDKSMQRVSIQKQRRRFYLKMNTMHEKGFN 801
            +   +  +     IR L  +   K  ++E   +   ++   K+ R  + ++   H  G  
Sbjct: 216  KVCRMNGQGTDMLIRSLIKIFKAKNASIEYTGRKSIKIDFVKKERVKFARVQVAHLLGKR 275

Query: 802  RARDIVMDRFTQRMLEFMVVCTSGNNKHSVRNIKPGNSGFVLSRRNLHGAQSRAYGEIFI 981
              RD+       R ++ +   + G    +   +  G SG ++S   L   QSR+  + F+
Sbjct: 276  AQRDLSTGVEENRFIDILSEYSGGKRAINPGVVCAGWSGIIISGGALTQKQSRSPSKAFV 335

Query: 982  IRGNHEGKLYDARIKLSKTIRRKITHYSDPGAKFWNGFNTAFQKHRKQDREHTCETDLDV 1161
            +RG HEGKLYDARIK++K +  KI H+S  GA FW GF+  F  +R  +REHTC T LDV
Sbjct: 336  VRGEHEGKLYDARIKVTKMMSHKIVHFSAAGANFWKGFDRCFLAYRSDNREHTCYTGLDV 395

Query: 1162 EECGEVAALLCLALFPCGGITCNRCVEENLLSEGQATHENILRKQQEIRQIVFKQHPQFK 1341
             ECGEVAAL+CLA+FPCG ITC  CV ++ LS+GQA+  ++  +  ++R+++   +P+FK
Sbjct: 396  TECGEVAALMCLAMFPCGKITCPDCVTDSELSQGQASGPSMKNRLLQLREVIKSSYPRFK 455

Query: 1342 HALQILERQGKALQSVNKNYKDFTEIHSLSEGKTLSAFSYANRINDVLIKGGSATADELS 1521
            HA+QIL+R  ++L S N+NY+DF EI SL++G   +AF +AN++N +LIKG +AT++E +
Sbjct: 456  HAVQILDRYEQSLNSANENYQDFAEIQSLTDGMEKAAFPHANKLNAILIKGATATSEEFA 515

Query: 1522 EATRNLLEIVRYLKNREESLEKGTLKTFRNKISQKAHLNPALMCDNQLDENGNFVWGERG 1701
            +AT+ LLEI RY+KNR E++EKG+LK+FRNKISQKAH+NP LMCDNQLD NGNF+WGERG
Sbjct: 516  QATKYLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDRNGNFIWGERG 575

Query: 1702 YHAKRFLNNYFEIVNPSKGYIQFEARTNPRGQRKTAITRLIVPTNFEVLREQMQGESIGE 1881
            YHAKRF +NYFEI++P KGY Q+E R  P G RK AI +LIVPTNFEVLREQM+GE +  
Sbjct: 576  YHAKRFFSNYFEIIDPKKGYTQYETRIVPNGARKLAIGKLIVPTNFEVLREQMRGEPVEP 635

Query: 1882 HPLTVECTSTLNGDFLFSCCCVTNEAGEPILSELQMPTKNHLVVGNSGDSKYVDMPQHEG 2061
            HP+TVEC S   GDF+++CCCVT E+G+P+LSE++MPTK+HLV+GNSGD KYVD+P+ E 
Sbjct: 636  HPITVECVSKSQGDFVYACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYVDLPEIEE 695

Query: 2062 QYMYIAKAGYCYMNIFLAMLVNVRKEEAKAFTKMVRDVLINQLGTWPTLLDVASACYLLK 2241
              MYIAK GYCY+NIFLAMLVNV++ +AK FTK+VRD L+ +LG WPTLLDVA+ACY LK
Sbjct: 696  NKMYIAKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLK 755

Query: 2242 VFFPDVSGAELPRIMIDHKTKTMHVIDSYGSLNTGYHILKANTVEQLIKFTRAGLKSDMK 2421
            VF+PDV+ AELPR+++DHKTK +HV+DSYGSL+TGYHILK NTVEQLIKFTR  L+S +K
Sbjct: 756  VFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHNLESSLK 815

Query: 2422 HYLVGGPILNNEDIDPIE-YRTPSWHLKRLIKGIYNPQVLLDDIRIDRYLPLYALLSPGV 2598
            HY VGG     ED+   +    P W +KRL+KG+Y P+ L +D+  + +LPLYALLSPGV
Sbjct: 816  HYRVGGT--KWEDVHGAKNIDDPQWCIKRLVKGVYRPKQLKEDMLANPFLPLYALLSPGV 873

Query: 2599 LIAMYNSASLEILTREYLRKDDEFVAIVLILESLARKVSVSTSLMSQLMLIEGEAQYIIE 2778
            ++A YNS SLE L   Y+R D     ++++L+SLA+KVSVS S+++QL +IE     ++E
Sbjct: 874  ILAFYNSGSLEYLMNHYIRVDSNVAVLLVVLKSLAKKVSVSQSVLAQLQIIERSLPELVE 933

Query: 2779 AVQGIKQRYPIPYTVVMEMLIILASRSESDAALDAAGFKKFQRESIQLMEKNYLRILEDE 2958
            A   I +            L +L  RSE +  L   G+   +  SI ++EK+YL+IL++ 
Sbjct: 934  ARANIAESDGAAAQACNRFLGMLIHRSEPNNELLDGGYTTLRDHSIAILEKSYLQILDEA 993

Query: 2959 WRGLSLRQKFSATLRSSKFSIHTRGGLRNGSIEDLGGRYSESMNFYFGEFKNGAGKMYAK 3138
            W  LS  ++ +    SSK +I ++  L   S  DLGGRYSES+   +   K    K+Y+ 
Sbjct: 994  WSELSWLERCAVRYYSSKQAIFSQRDLPMQSGVDLGGRYSESVVSSYEWSKQRMKKLYSS 1053

Query: 3139 FKTQVKAITQNTHTSIKRRIYSCF----NYFIPDVFKFINVMVCLTMILTLMQELHTMVE 3306
              ++    T+N+ + + R++ S      NY +PD+F+FINV++C++++LT+  E + +V 
Sbjct: 1054 MCSK----TRNSMSCVSRKVSSSICRTINYLVPDIFRFINVLICISLLLTIASETNRIVT 1109

Query: 3307 RARNCKRLARRFENQEKEQKIKFMHQAFQNEHKADPTFEEFLEYLGKYTPELLTYFQ-ED 3483
              R  K      E ++ E ++ F H    +     PTF+EF+EY+    P L  Y + E+
Sbjct: 1110 AQRKLKLDVVEAERKKIEWELAFHHSILTHSANQHPTFDEFVEYINAKAPHLSEYIEPEE 1169

Query: 3484 EVVVHQAKRRGELELERVVAFIALVMMVFDSERSDCVVKILNKLKNIISSTDADVYHQGL 3663
            + VVHQAKR+ E ELER++AFIALV+M+FD+ERSDCV KILNKLK ++S+ +  VYHQ L
Sbjct: 1170 KAVVHQAKRQSEQELERIIAFIALVLMMFDAERSDCVTKILNKLKGLVSTVEPTVYHQAL 1229

Query: 3664 AEIEDDINEKNLTIDFELSQDSIRTPPNVMEHTFNTWWNHQVSNGRTIPHYRTEGHFMTF 3843
             +IEDD++E+NL +DFEL+ D         E TF +WWNHQ+S G TIPHYRTEG FMTF
Sbjct: 1230 NDIEDDLSERNLFVDFELNNDGELIQQLPAEKTFASWWNHQLSRGYTIPHYRTEGKFMTF 1289

Query: 3844 TRANAHHVATEIATSDHKDIMLMGAVGSGKSTGLPFHLSKRGKVLLVEPTRPLAENVYRQ 4023
            TRA A  +A  IA    KDI+LMGAVGSGKSTGLP+HLS++G VLL+EPTRPLAENV++Q
Sbjct: 1290 TRATATEIAGRIAHESDKDILLMGAVGSGKSTGLPYHLSRKGNVLLLEPTRPLAENVHKQ 1349

Query: 4024 LSHEPFYINATLLMRGLTTCGSSPVTIMTSGFALNQLAHNRHRIAEYDFVIFDECHVHDA 4203
            LS  PF+ N TL MRGLT  GS+P+++MTSGFALN  A+NR RI E+DF+IFDECHVHDA
Sbjct: 1350 LSQAPFHQNTTLRMRGLTAFGSAPISVMTSGFALNYFANNRARIEEFDFIIFDECHVHDA 1409

Query: 4204 NAMALRCLLHDAEFSGKIIKVSATPPGREVEFTTQHPVXXXXXXXXXXXXFVDAQGTGAN 4383
            +AMA+RCLLHD ++SGKIIKVSATPPGREVEF+TQ+PV            FV+AQG+G+N
Sbjct: 1410 SAMAMRCLLHDCDYSGKIIKVSATPPGREVEFSTQYPVTISTEDTLSFQNFVNAQGSGSN 1469

Query: 4384 CDVIRYGDNILVYVASYNEVDIISKALIDKGYKVTKVDGRTMKVGKVEIITSGTPQRKHF 4563
            CDVI  GDNILVYVASYNEVD +SK L +K +KVTKVDGRTMKVG +EI TSGTP +KHF
Sbjct: 1470 CDVISKGDNILVYVASYNEVDTLSKLLAEKDFKVTKVDGRTMKVGNIEITTSGTPSKKHF 1529

Query: 4564 VVATNIIENGVTLDIEVVVDFGTKVIPFLDVDNRMMQYQKVAINYGERIQRLGRVGRHKA 4743
            +VATNIIENGVTLDI+VV DFGTKV+P+LD DNRM+   K +INYGERIQRLGRVGRHK 
Sbjct: 1530 IVATNIIENGVTLDIDVVADFGTKVLPYLDTDNRMLSTTKTSINYGERIQRLGRVGRHKP 1589

Query: 4744 GTALRIGHTERGLSEVPSCIATEAAFRCFTFGLPVITNNVTTSLLSNATVRQARTMAHFE 4923
            G ALRIGHTE+GLSEVPSCIATEAA +CFT+GLPVITNNV+TS+L N TV+QARTM+ FE
Sbjct: 1590 GHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVTVKQARTMSVFE 1649

Query: 4924 LSPFYTYHFVRYDGTMHPEIHKVFKRFKLRDSEIVLNKTAIPNRGINTWMTSSAYQRLGA 5103
            ++PFYT   VRYDG+MHP++H++ KRFKLRDSEIVLNK AIPNRG+N W+T+S Y RLGA
Sbjct: 1650 ITPFYTSQVVRYDGSMHPQVHELLKRFKLRDSEIVLNKLAIPNRGVNAWLTASEYARLGA 1709

Query: 5104 NVGDSNEVRIPFLCKDIPETLHETIWDIITTYKSDAGFGRLSSASACKVAYTLKTDVMSI 5283
            NV D  +VRIPF+C+DIPE LH  +WD+I  +K DAGFGRLSSASA KVAYTL+TDV SI
Sbjct: 1710 NVEDRRDVRIPFMCRDIPEKLHLEMWDVIVKFKGDAGFGRLSSASASKVAYTLQTDVNSI 1769

Query: 5284 QRTIHIIDALIVEERQKQEYFRXXXXXXXXXXXXXXXXXXXAIRARFSSDHTVENISVLE 5463
            QRT+ IID LI EER+KQEYF+                   AI++R   DHT ENIS+LE
Sbjct: 1770 QRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSSFSLQSITNAIKSRMMKDHTCENISILE 1829

Query: 5464 NAKAQLCEFKNLNIDAAFQDFDSQVGRNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKP 5643
             AK+QL EF+NLN D +F      + R+++S +GAL+AV+HQS   MS+  KLKG+WNK 
Sbjct: 1830 GAKSQLLEFRNLNADHSFTTKTDGISRHFMSEYGALEAVHHQSTNDMSKFLKLKGKWNKT 1889

Query: 5644 LITRDIMIMIGVLLGGLMMVYKQFRNQMSEEVYHEAKGKXXXXXXXXXXXXXNKLGREVY 5823
            LITRD++++ GVL GG+ M+ ++ ++ ++E V HEAKGK             NK+GREVY
Sbjct: 1890 LITRDVLVICGVLGGGIWMILQRLQSGVTEPVIHEAKGKRQRQKLKFRNARDNKMGREVY 1949

Query: 5824 GDDGTMEHYFGEAYTKKGKTSGRTHGMGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLD 6003
            GDD T+EH+FG+AYTKKGK+ GRT G+G K RKFVNMY FDPEDFSAVRFVD LTGATLD
Sbjct: 1950 GDDDTIEHFFGDAYTKKGKSKGRTRGLGHKNRKFVNMYGFDPEDFSAVRFVDPLTGATLD 2009

Query: 6004 ETPITDLHLVQEHFTKIRSEMIESGELESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNP 6183
            E+P TD+ L+Q+HF  IR++++E  ELE Q +   K + AYY NN+TGKAL+VDLTPH P
Sbjct: 2010 ESPFTDITLIQKHFGDIRNDLLEEDELEPQAIQYHKTIQAYYTNNKTGKALKVDLTPHIP 2069

Query: 6184 LLVCANKPTIAGFPEREYELRQTGQPKAISLKDVPKANDLSELVQHESASLHRGLRDYNP 6363
            L VC    TIAGFPERE+ELRQTG+ + IS+ +VPKAN     V HES+S+ RGLRDYNP
Sbjct: 2070 LKVCDLHATIAGFPEREFELRQTGKAQPISIDEVPKANTELVPVDHESSSMFRGLRDYNP 2129

Query: 6364 ISNNICKLVNRSEGERDTMYGLGFGPIIITNRHLFEHNGGELDIKTRHGDFLITNMTKLQ 6543
            ISNNIC L N S+G  +++YG+GFGP+I+TNRHLFE N GEL IK+RHG+F+I N T+L 
Sbjct: 2130 ISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFVIRNTTQLH 2189

Query: 6544 LYPVPNRDLILIRLPKDIPPFPQKLQFRQPERNEKICMVGSNFQAKSVTNTVSETSIILP 6723
            L P+P+RDL+LIRLPKDIPPFPQKL FRQPE+ E+ICMVGSNFQ KS+T+ VSETS ++P
Sbjct: 2190 LLPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTVMP 2249

Query: 6724 MDDCHFWKHWITTKDGQCGLPLVSTRDGNIVGIHSLGSFNNTINYFASFPENFVNQYLLT 6903
            +++  FWKHWI+TKDGQCG P+VST+DG I+G+HSL +F N+INYFA+FP++F  +YL T
Sbjct: 2250 VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLYT 2309

Query: 6904 PENHHWIQHWKYNTDNISWGALKISNEAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQ 7083
             E H W++HWKYNT  ISWG+L I    P GLFK +KLI DL+S  V  Q ++ +W+Y Q
Sbjct: 2310 IETHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQTQQNRWMYEQ 2369

Query: 7084 LDGNLKAIASCPNQLVKKHVVKGKCPMFDMYLKLDEEGRKFFTPLLGQYQKSRLNREAYI 7263
            L GNLKAIA CP+QLV KH VKGKC MFD+YLKL +E R++F P+LGQYQKSRLNREAY 
Sbjct: 2370 LTGNLKAIAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQPMLGQYQKSRLNREAYA 2429

Query: 7264 KDIM 7275
            KD++
Sbjct: 2430 KDLL 2433


>dbj|BAF31180.1| polyprotein [Turnip mosaic virus]
          Length = 3164

 Score = 2683 bits (6954), Expect = 0.0
 Identities = 1319/2383 (55%), Positives = 1715/2383 (71%), Gaps = 6/2383 (0%)
 Frame = +1

Query: 145  LQFGTLPPVTI-GAFVTSSETTAMEKEQKKENHVKSTEPRKEVNANKAFINNMQSEYIKQ 321
            +QFG+L PV + G   +S++ T  +   + +  ++     +        +  M  E  K+
Sbjct: 54   VQFGSLDPVVVKGGAGSSAKATRQQPNGEIDVSLREAAALEVAKPKPNAVLRMHEEINKE 113

Query: 322  CAVLDKWEREYNKNRNKSPESYKIVLTKQQKKAMLKRSVERAHKKLKEQNDILDRCIIGP 501
             A+   WE    +      E+ KI++T      ++ RS     +K   +     + I+  
Sbjct: 114  RALFLDWETSLKRRSYGIAENEKIIMTTHGVSKIVPRSSRAMKQKRARERRRAQQPIVLK 173

Query: 502  WGPPTNAFSIASGPLPSAMEEQ---IKWPLHKTHSKRIKKAPRQPIELGQEKFKKFIREL 672
            W P  + FSI  GP  + +E +   +KWPLHKT S + KK   +   +  +     +R L
Sbjct: 174  WEPKLSEFSIGGGPSANTIEAEEFCVKWPLHKTPSMK-KKTVHKVCRMNNQGIDMLMRSL 232

Query: 673  TTLMIEKQFTLELCDKSMQRVSIQKQRRRFYLKMNTMHEKGFNRARDIVMDRFTQRMLEF 852
              +   K   +E   +   ++   K+ R  + ++   H  G    RD+         ++ 
Sbjct: 233  IKIFKAKSANIEYTGRKSIKIDFIKKERAKFARVQVAHLLGKRAQRDLSTGVEENHFIDV 292

Query: 853  MVVCTSGNNKHSVRNIKPGNSGFVLSRRNLHGAQSRAYGEIFIIRGNHEGKLYDARIKLS 1032
            +   +      +   +  G SG ++    L   +SR   + F++RG HEGKLYDARIK++
Sbjct: 293  LSGYSGNKKAINPGMVCAGWSGIIIRDGVLTQKRSRCPSKAFVVRGEHEGKLYDARIKVT 352

Query: 1033 KTIRRKITHYSDPGAKFWNGFNTAFQKHRKQDREHTCETDLDVEECGEVAALLCLALFPC 1212
            KT+  KITH+S  GA FW GF+  F  +R  +REHTC + LDV ECGEVAAL+CLA+FPC
Sbjct: 353  KTMSHKITHFSAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCLAMFPC 412

Query: 1213 GGITCNRCVEENLLSEGQATHENILRKQQEIRQIVFKQHPQFKHALQILERQGKALQSVN 1392
            G ITC  CV ++ LS+GQA+  ++  +  ++R+++   +P+FKHA+QIL+R  ++L S N
Sbjct: 413  GKITCPDCVTDSELSQGQASGPSMKHRLAQLREVIKSSYPRFKHAVQILDRYEQSLSSAN 472

Query: 1393 KNYKDFTEIHSLSEGKTLSAFSYANRINDVLIKGGSATADELSEATRNLLEIVRYLKNRE 1572
             NY+DF EI SL++G   +AF +AN++N +LIKG +AT +E  +AT++LLEI RY+KNR 
Sbjct: 473  GNYQDFAEIQSLTDGMERAAFPHANKLNAILIKGATATGEEYEQATKHLLEITRYMKNRT 532

Query: 1573 ESLEKGTLKTFRNKISQKAHLNPALMCDNQLDENGNFVWGERGYHAKRFLNNYFEIVNPS 1752
            E++EKG+LK+FRNKISQKAH+NP LMCDNQLD+NGNF+WGERGYHAKRF +NYFEI++P 
Sbjct: 533  ENIEKGSLKSFRNKISQKAHINPTLMCDNQLDKNGNFIWGERGYHAKRFFSNYFEIIDPK 592

Query: 1753 KGYIQFEARTNPRGQRKTAITRLIVPTNFEVLREQMQGESIGEHPLTVECTSTLNGDFLF 1932
            KGY Q+E R  P G RK AI +LIVPTNFEVLREQM+GE +  HP+TVEC S   GDF+ 
Sbjct: 593  KGYTQYETRIVPNGSRKLAIGKLIVPTNFEVLREQMKGEPVEPHPITVECVSKSQGDFVH 652

Query: 1933 SCCCVTNEAGEPILSELQMPTKNHLVVGNSGDSKYVDMPQHEGQYMYIAKAGYCYMNIFL 2112
            +CCCVT E+G+P+LSE++MPTK+HLV+GNSGD KYVD+P+ E   MYIAK GYCY+NIFL
Sbjct: 653  ACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYVDLPEIEENKMYIAKEGYCYINIFL 712

Query: 2113 AMLVNVRKEEAKAFTKMVRDVLINQLGTWPTLLDVASACYLLKVFFPDVSGAELPRIMID 2292
            AMLVNV++ +AK FTK+VRD L+ +LG WPTLLDVA+ACY LKVF+PDV+ AELPR+++D
Sbjct: 713  AMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDVANAELPRMLVD 772

Query: 2293 HKTKTMHVIDSYGSLNTGYHILKANTVEQLIKFTRAGLKSDMKHYLVGGPILNNED-IDP 2469
            HKTK +HV+DSYGSL+TGYHILK NTVEQLIKFTR  L+S +KHY VGG    +E  ++ 
Sbjct: 773  HKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHNLESSLKHYRVGGTKWEDEHGVNN 832

Query: 2470 IEYRTPSWHLKRLIKGIYNPQVLLDDIRIDRYLPLYALLSPGVLIAMYNSASLEILTREY 2649
            I+   P W +KRLIKG+Y P++L  D+  + +LPLYALLSPGV++A YNS SLE L   Y
Sbjct: 833  ID--DPQWCIKRLIKGVYRPKLLKQDMLTNPFLPLYALLSPGVILAFYNSGSLEYLMSHY 890

Query: 2650 LRKDDEFVAIVLILESLARKVSVSTSLMSQLMLIEGEAQYIIEAVQGIKQRYPIPYTVVM 2829
            +R D     ++++L+SLARKVS S S+++QL +IE     ++EA   I            
Sbjct: 891  IRADSNVAVLLVVLKSLARKVSNSQSVLAQLQIIERSLPELVEATANINGADNAASLACN 950

Query: 2830 EMLIILASRSESDAALDAAGFKKFQRESIQLMEKNYLRILEDEWRGLSLRQKFSATLRSS 3009
            + L +L + +E +  L   G+   +  SI +MEK+YL+IL++ W  LS  ++F+    SS
Sbjct: 951  KFLGMLINMAEPNNELADGGYTILRDHSISIMEKSYLQILDEAWNELSWSERFAIKYYSS 1010

Query: 3010 KFSIHTRGGLRNGSIEDLGGRYSESMNFYFGEFKNGAGKMYAKFKTQVKAITQNTHTSIK 3189
            K +I ++  L   S  DLGGRYSES+   +   K     +Y+K     ++    T + + 
Sbjct: 1011 KQAIFSQKDLPMRSDADLGGRYSESVTSSYEWSKQRLKGIYSKMSNATRSSVSWTSSKVS 1070

Query: 3190 RRIYSCFNYFIPDVFKFINVMVCLTMILTLMQELHTMVERARNCKRLARRFENQEKEQKI 3369
              I S  NY +PD+FKFIN++VC++++ T+  E + +V   R  K      E ++ E ++
Sbjct: 1071 NSICSTINYLVPDIFKFINILVCISVLATIAAEANRIVATQRKLKLDIDEAERKKIEWEL 1130

Query: 3370 KFMHQAFQNEHKADPTFEEFLEYLGKYTPELLTYFQ-EDEVVVHQAKRRGELELERVVAF 3546
             F H          PT EEF  Y+G+  P L  + + E++VVVHQAKR+ E +LER++AF
Sbjct: 1131 TFHHALLTQNAGQHPTLEEFTAYIGEKAPHLSEHIEHEEKVVVHQAKRQSEQDLERIIAF 1190

Query: 3547 IALVMMVFDSERSDCVVKILNKLKNIISSTDADVYHQGLAEIEDDINEKNLTIDFELSQD 3726
            IALV+M+FD+ERSDCV KILNKLK ++S+ +  VYHQ L +IEDD++E+NL +DFEL+ D
Sbjct: 1191 IALVLMMFDAERSDCVTKILNKLKGLVSTVEPSVYHQTLNDIEDDLSERNLFVDFELTND 1250

Query: 3727 SIRTPPNVMEHTFNTWWNHQVSNGRTIPHYRTEGHFMTFTRANAHHVATEIATSDHKDIM 3906
            S        E TF +WWNHQ+S G TIPHYRTEG FMTFTRA A  VA +IA    KDI+
Sbjct: 1251 SEMLHQLPAEKTFASWWNHQLSRGFTIPHYRTEGKFMTFTRATATEVAGKIAHESDKDIL 1310

Query: 3907 LMGAVGSGKSTGLPFHLSKRGKVLLVEPTRPLAENVYRQLSHEPFYINATLLMRGLTTCG 4086
            LMGAVGSGKSTGLP+HLS+RG VLL+EPTRPLAENV++QLS  PF+ N TL MRGLT  G
Sbjct: 1311 LMGAVGSGKSTGLPYHLSRRGNVLLLEPTRPLAENVHKQLSQAPFHQNTTLRMRGLTAFG 1370

Query: 4087 SSPVTIMTSGFALNQLAHNRHRIAEYDFVIFDECHVHDANAMALRCLLHDAEFSGKIIKV 4266
            S+P+++MTSGFALN  A+NR RI E+DFVIFDECHVHDANAMA+RCLLH+ +++GKIIKV
Sbjct: 1371 SAPISVMTSGFALNYFANNRARIEEFDFVIFDECHVHDANAMAMRCLLHECDYTGKIIKV 1430

Query: 4267 SATPPGREVEFTTQHPVXXXXXXXXXXXXFVDAQGTGANCDVIRYGDNILVYVASYNEVD 4446
            SATPPGREVEF+TQ+PV            FV+AQG+G+NCDVI  GDNILVYVASYNEVD
Sbjct: 1431 SATPPGREVEFSTQYPVTISTEDTLSFQDFVNAQGSGSNCDVISKGDNILVYVASYNEVD 1490

Query: 4447 IISKALIDKGYKVTKVDGRTMKVGKVEIITSGTPQRKHFVVATNIIENGVTLDIEVVVDF 4626
             +SK LI++ +KVTKVDGRTMKVG +EI TSGTP RKHF+VATNIIENGVTLDI+VV DF
Sbjct: 1491 TLSKLLIERNFKVTKVDGRTMKVGNIEITTSGTPSRKHFIVATNIIENGVTLDIDVVADF 1550

Query: 4627 GTKVIPFLDVDNRMMQYQKVAINYGERIQRLGRVGRHKAGTALRIGHTERGLSEVPSCIA 4806
            GTKV+P+LD DNRM+   K +INYGERIQRLGRVGRHK G ALRIGHTE+GLSEVPSCIA
Sbjct: 1551 GTKVLPYLDTDNRMLSTTKTSINYGERIQRLGRVGRHKPGHALRIGHTEKGLSEVPSCIA 1610

Query: 4807 TEAAFRCFTFGLPVITNNVTTSLLSNATVRQARTMAHFELSPFYTYHFVRYDGTMHPEIH 4986
            TEAA +CFT+GLPVITNNV+TS+L N TV+QARTM+ FE++PFYT   +RYDG+MHP++H
Sbjct: 1611 TEAALKCFTYGLPVITNNVSTSILGNVTVKQARTMSVFEITPFYTSQVIRYDGSMHPQVH 1670

Query: 4987 KVFKRFKLRDSEIVLNKTAIPNRGINTWMTSSAYQRLGANVGDSNEVRIPFLCKDIPETL 5166
             + KRFKLRDSEIVLNK AIPNRG+N W+T+S Y RLGANV D  +VRIPF+C+DIPE L
Sbjct: 1671 ALLKRFKLRDSEIVLNKLAIPNRGVNAWLTASEYARLGANVEDRRDVRIPFMCRDIPEKL 1730

Query: 5167 HETIWDIITTYKSDAGFGRLSSASACKVAYTLKTDVMSIQRTIHIIDALIVEERQKQEYF 5346
            H  +WD+I  +K DAGFGRLSSASA KVAYTL+TDV SIQRT+ IID LI EER+KQEYF
Sbjct: 1731 HLEMWDVILKFKGDAGFGRLSSASASKVAYTLQTDVNSIQRTVTIIDTLIAEERRKQEYF 1790

Query: 5347 RXXXXXXXXXXXXXXXXXXXAIRARFSSDHTVENISVLENAKAQLCEFKNLNIDAAFQDF 5526
            +                   AI++R   DHT ENISVLE AK+QL EFKNLN D +F   
Sbjct: 1791 KTVTSNCVSSSNFSLQSITNAIKSRMMKDHTCENISVLEGAKSQLLEFKNLNADHSFTTK 1850

Query: 5527 DSQVGRNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDIMIMIGVLLGGLMMVY 5706
            +  + R+++S +GAL+AV+HQ+   MS+  KLKG+WNK LITRD++++ GVL GG+ M++
Sbjct: 1851 NDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDVLVICGVLGGGIWMIF 1910

Query: 5707 KQFRNQMSEEVYHEAKGKXXXXXXXXXXXXXNKLGREVYGDDGTMEHYFGEAYTKKGKTS 5886
            +  R+++SE V HEAKGK             NK+GREV+GDD T+EH+FG+AYTKKGK+ 
Sbjct: 1911 QHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKIGREVFGDDDTIEHFFGDAYTKKGKSK 1970

Query: 5887 GRTHGMGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQEHFTKIRSEM 6066
            GRT G+G K RKF+NMY FDPEDFSAVRFVD LTGATLDETP TD+ L+Q+HF  IR ++
Sbjct: 1971 GRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDETPFTDITLIQKHFGDIRMDL 2030

Query: 6067 IESGELESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANKPTIAGFPEREYELR 6246
            +   EL+   L + + + AYYMNN+TGKAL+VDLTPH P  VC    TIAGFPERE ELR
Sbjct: 2031 LAEDELDPNELRTNRTIQAYYMNNKTGKALKVDLTPHVPFKVCDFHATIAGFPEREDELR 2090

Query: 6247 QTGQPKAISLKDVPKANDLSELVQHESASLHRGLRDYNPISNNICKLVNRSEGERDTMYG 6426
            QTG+ + IS+ ++PKAN     V HES+S+ RGLRDYNPISNNIC L N S+G  +++YG
Sbjct: 2091 QTGKAQPISINEIPKANTELVPVDHESSSMFRGLRDYNPISNNICHLTNVSDGASNSLYG 2150

Query: 6427 LGFGPIIITNRHLFEHNGGELDIKTRHGDFLITNMTKLQLYPVPNRDLILIRLPKDIPPF 6606
            +GFGP+I+TNRHLFE N GEL IK+RHG+F+I N T+L L P+P+RDL+LIRLPKDIPPF
Sbjct: 2151 VGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHLLPIPDRDLLLIRLPKDIPPF 2210

Query: 6607 PQKLQFRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWITTKDGQCGLP 6786
            PQKL FRQPER E+ICMVGSNFQ KS+T+ VSETS I+P+++ HFWKHWI+TKDGQCG P
Sbjct: 2211 PQKLGFRQPERGERICMVGSNFQTKSITSVVSETSTIMPVENSHFWKHWISTKDGQCGSP 2270

Query: 6787 LVSTRDGNIVGIHSLGSFNNTINYFASFPENFVNQYLLTPENHHWIQHWKYNTDNISWGA 6966
            +VST+DG I+G+HSL +F N+INYFA+FP++F  +YL T E H WI+HWKYNT  ISWG+
Sbjct: 2271 MVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLHTIEAHEWIKHWKYNTSAISWGS 2330

Query: 6967 LKISNEAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASCPNQLVKKHVV 7146
            L I    P GLFK +KLI DL+S  V  Q +  +W+Y QL GNLKAIA CP+QLV KH V
Sbjct: 2331 LNIQASQPAGLFKVSKLISDLDSTAVYAQTQHNRWMYEQLTGNLKAIAHCPSQLVTKHTV 2390

Query: 7147 KGKCPMFDMYLKLDEEGRKFFTPLLGQYQKSRLNREAYIKDIM 7275
            KGKC MFD+YLKL +E R++F P+LGQYQKSRLNREAY KD++
Sbjct: 2391 KGKCQMFDLYLKLHDEAREYFQPMLGQYQKSRLNREAYAKDLL 2433