BLASTX nr result
ID: Dioscorea21_contig00000015
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dioscorea21_contig00000015
(3555 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA36278.1| polyprotein [Japanese yam mosaic virus] 2308 0.0
ref|NP_051161.1| polyprotein [Japanese yam mosaic virus] gi|6277... 2286 0.0
dbj|BAF31166.1| polyprotein [Turnip mosaic virus] 1649 0.0
dbj|BAD69822.1| polyprotein [Turnip mosaic virus (isolate UK1)] 1648 0.0
dbj|BAD69820.1| polyprotein [Turnip mosaic virus (isolate UK1)] 1647 0.0
>dbj|BAA36278.1| polyprotein [Japanese yam mosaic virus]
Length = 3130
Score = 2308 bits (5980), Expect = 0.0
Identities = 1122/1184 (94%), Positives = 1144/1184 (96%)
Frame = -3
Query: 3553 RNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDIMIMIGVLLGGLMMVYKQFRN 3374
RNYISNFGALDAVYHQSEKAMSEHFKLKGRWNK ITRD+MIMIGVLLGGLMMVYKQF+
Sbjct: 1819 RNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKSPITRDVMIMIGVLLGGLMMVYKQFKT 1878
Query: 3373 QMSEEVYHEAKGKXXXXXXXXXXXXDNKLGREVYGDDGTMEHYFGEAYTKKGKTSGRTHG 3194
MSEEVYHEAKGK DNKLGREVYGDDGTMEHYFGEAYTKKGKTSGRTHG
Sbjct: 1879 YMSEEVYHEAKGKRQRQRLRFRDARDNKLGREVYGDDGTMEHYFGEAYTKKGKTSGRTHG 1938
Query: 3193 MGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQEHFTKIRSDMIESGE 3014
MGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQEHFTKIRSDMIESGE
Sbjct: 1939 MGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQEHFTKIRSDMIESGE 1998
Query: 3013 LESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANKPTIAGFPEREYELRQTGQP 2834
LESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCAN+PTIAGFPEREYELRQTGQP
Sbjct: 1999 LESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANRPTIAGFPEREYELRQTGQP 2058
Query: 2833 KAISLKDVPKANDLSELVQHESASLHRGLRDYNPISNNICKLINRSEGERDTMYGLGFGP 2654
KAISLKDVPK+NDLSE+VQHESA LHRGLRDYNPISNNICKLINRSEGERDTMYG+GFGP
Sbjct: 2059 KAISLKDVPKSNDLSEMVQHESALLHRGLRDYNPISNNICKLINRSEGERDTMYGIGFGP 2118
Query: 2653 IIITNRHLFEHNGGELDIKTRHGDFLIANMTKLQLYPVPNRDLILIRLPKDIPPFPQKLQ 2474
+IITNRHLFEHNGGELDIKTRHGDFLIAN TKLQLYPVPNRDLILIRLPKDIPPFPQKLQ
Sbjct: 2119 VIITNRHLFEHNGGELDIKTRHGDFLIANTTKLQLYPVPNRDLILIRLPKDIPPFPQKLQ 2178
Query: 2473 FRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWITTKDGQCGLPLVSTR 2294
FRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWITTKDGQCGLPLVSTR
Sbjct: 2179 FRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWITTKDGQCGLPLVSTR 2238
Query: 2293 DGNIVGIHSLGSFNNTINYFASFPENFVNQYLSTPENHHWIQHWRYNTDNISWGALKISN 2114
GNIVGIHSLGS NNTINYFASFPENFV+QYL TPENH WIQHW+YNTDNISWGALKISN
Sbjct: 2239 VGNIVGIHSLGSLNNTINYFASFPENFVSQYLLTPENHQWIQHWKYNTDNISWGALKISN 2298
Query: 2113 EAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASCPNQLVTKHVVKGKCP 1934
EAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASCPNQLVTKHVVKGKCP
Sbjct: 2299 EAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASCPNQLVTKHVVKGKCP 2358
Query: 1933 MFDMYLKLDEEGRKFFTPLLGQYQKSRLNKEAYIKDIMKYSTVIEAGNVQPRTFEEAVEL 1754
MFDMYLKLDEEGRKFFTPLLGQYQKSRLN+EAYIKDIMKYSTVIEAGNVQP TFEEAV L
Sbjct: 2359 MFDMYLKLDEEGRKFFTPLLGQYQKSRLNREAYIKDIMKYSTVIEAGNVQPHTFEEAVAL 2418
Query: 1753 LIQDLNELGFETCQYVTDEEVIFNALNMKSAVGALYGGKKREYFKDFTQEMKEQILKQSC 1574
+IQDL ELGFETCQY+TDE+VIFNALNMKSAVGALYGGKKREYFKDFTQEMK QILKQSC
Sbjct: 2419 VIQDLEELGFETCQYITDEDVIFNALNMKSAVGALYGGKKREYFKDFTQEMKHQILKQSC 2478
Query: 1573 ARLYTGKMGLWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLGGKTCVDDFNNQFYELNI 1394
ARLYTGKMGLWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLGGKTCVDDFNNQFYELNI
Sbjct: 2479 ARLYTGKMGLWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLGGKTCVDDFNNQFYELNI 2538
Query: 1393 KGPWSVGMTKFYGGWDELLTKLPDNWIHCDADGSQFDSSLSPYLINAVLNIRLHFMESWD 1214
KGPWSVGMTKFYGGW+ELLTKLPD W+HCDADGSQFDSSLSPYLINAVLNIRLHFMESWD
Sbjct: 2539 KGPWSVGMTKFYGGWNELLTKLPDKWVHCDADGSQFDSSLSPYLINAVLNIRLHFMESWD 2598
Query: 1213 IGEQMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVLLALKYSLLKDGV 1034
IGEQMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLM LLALKYSLLKDGV
Sbjct: 2599 IGEQMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMALLALKYSLLKDGV 2658
Query: 1033 KAEMHKQIIRYFVNGDDLLISIDPEYESLLDTMQGNFKELGLKYDFNSRTKDKSELWFMS 854
AE HK II+YFVNGDDLLIS+DP YESLLDTMQ NFKELGLKYDFNSRTKDKSELWFMS
Sbjct: 2659 NAETHKDIIKYFVNGDDLLISVDPSYESLLDTMQENFKELGLKYDFNSRTKDKSELWFMS 2718
Query: 853 HQGKRIENIWIPKLEQERIVSILEWDRSKEPSNRMEAICAAMIESWGHTELTHQIRRFYA 674
HQGKR+ENIWIPKLEQERIVSILEWDRSKEPSNR EAICAAMIESWGH ELTHQIRRFYA
Sbjct: 2719 HQGKRVENIWIPKLEQERIVSILEWDRSKEPSNRTEAICAAMIESWGHVELTHQIRRFYA 2778
Query: 673 WLLGQAPYSGLAEIGKAPYIAESALRKLYLDKDADQSAIEIYLKAIFEDYTTEPEDLFVY 494
WL+GQAPYSGLAEIGKAPYIAESALRKLYLDKDADQSAIEIYLKAIFEDYT EPEDLFVY
Sbjct: 2779 WLIGQAPYSGLAEIGKAPYIAESALRKLYLDKDADQSAIEIYLKAIFEDYTAEPEDLFVY 2838
Query: 493 HQSGEDTLDAGTSDPSRSKKQEGPKPAQGESSATEGFEPADDPTRKGKQQTVINLEKDVN 314
HQSGEDTLDAGTSDPS+SKKQE PK AQGES TEGFEPADDPTRKGKQQTVINLEKDVN
Sbjct: 2839 HQSGEDTLDAGTSDPSKSKKQEVPKSAQGESPTTEGFEPADDPTRKGKQQTVINLEKDVN 2898
Query: 313 VGTMGTFAIPRLKGLATKMNMPRVRGKAAMNLDHLLLYNPEQVDLANTRATRKQFDTWYD 134
VGTMGTFA+PRLKGLATKMNMPRVRGKAAMNLDHLLLYNPEQVDLANTRATRKQFDTWYD
Sbjct: 2899 VGTMGTFAVPRLKGLATKMNMPRVRGKAAMNLDHLLLYNPEQVDLANTRATRKQFDTWYD 2958
Query: 133 GVKRDYELDDSSMQIILNGLMVWCIENGTSPNVNGMWVMMDGEE 2
GVKRDYELDDSSMQIILNGLMVWCIENGTSPN+NGMWVMMDGEE
Sbjct: 2959 GVKRDYELDDSSMQIILNGLMVWCIENGTSPNINGMWVMMDGEE 3002
>ref|NP_051161.1| polyprotein [Japanese yam mosaic virus] gi|6277343|dbj|BAA86288.1|
polyprotein [Japanese yam mosaic virus]
Length = 3132
Score = 2286 bits (5923), Expect = 0.0
Identities = 1106/1184 (93%), Positives = 1145/1184 (96%)
Frame = -3
Query: 3553 RNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDIMIMIGVLLGGLMMVYKQFRN 3374
R+YISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDIMIMIGVLLGGLMMVYKQF++
Sbjct: 1821 RSYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDIMIMIGVLLGGLMMVYKQFKS 1880
Query: 3373 QMSEEVYHEAKGKXXXXXXXXXXXXDNKLGREVYGDDGTMEHYFGEAYTKKGKTSGRTHG 3194
QM+EEV+HEAKGK D+KLGREVYGDDGTMEHYFGEAYTKKGKTSGR HG
Sbjct: 1881 QMTEEVHHEAKGKRQRQRLRFRDARDSKLGREVYGDDGTMEHYFGEAYTKKGKTSGRKHG 1940
Query: 3193 MGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQEHFTKIRSDMIESGE 3014
MGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQEHFTKIRS+MIESGE
Sbjct: 1941 MGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQEHFTKIRSEMIESGE 2000
Query: 3013 LESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANKPTIAGFPEREYELRQTGQP 2834
LESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANKPTIAGFPEREYELRQTGQP
Sbjct: 2001 LESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANKPTIAGFPEREYELRQTGQP 2060
Query: 2833 KAISLKDVPKANDLSELVQHESASLHRGLRDYNPISNNICKLINRSEGERDTMYGLGFGP 2654
KAISLKDVPKANDLSE+VQHESASLHRGLRDYNPISNNICKLINRSEGERDTMYGLGFGP
Sbjct: 2061 KAISLKDVPKANDLSEMVQHESASLHRGLRDYNPISNNICKLINRSEGERDTMYGLGFGP 2120
Query: 2653 IIITNRHLFEHNGGELDIKTRHGDFLIANMTKLQLYPVPNRDLILIRLPKDIPPFPQKLQ 2474
+IITNRHLFEHNGGELDIKTRHGDFLI NMTKLQLYPVPNRDLILIRLPKDIPPFPQKLQ
Sbjct: 2121 VIITNRHLFEHNGGELDIKTRHGDFLITNMTKLQLYPVPNRDLILIRLPKDIPPFPQKLQ 2180
Query: 2473 FRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWITTKDGQCGLPLVSTR 2294
FRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWITTKDGQCGLPLVSTR
Sbjct: 2181 FRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWITTKDGQCGLPLVSTR 2240
Query: 2293 DGNIVGIHSLGSFNNTINYFASFPENFVNQYLSTPENHHWIQHWRYNTDNISWGALKISN 2114
DGNIVGIHSLGSFNNTINYFASFPENFVNQYL TPENH WIQHW+YNTDNISWGALKISN
Sbjct: 2241 DGNIVGIHSLGSFNNTINYFASFPENFVNQYLLTPENHQWIQHWKYNTDNISWGALKISN 2300
Query: 2113 EAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASCPNQLVTKHVVKGKCP 1934
EAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASCPNQLV+KHVVKGKCP
Sbjct: 2301 EAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASCPNQLVSKHVVKGKCP 2360
Query: 1933 MFDMYLKLDEEGRKFFTPLLGQYQKSRLNKEAYIKDIMKYSTVIEAGNVQPRTFEEAVEL 1754
MFDMYLKLDE GRKFFTPLLGQYQKSRLNKEAYIKDIMKYSTVIEAGNVQP+TFE+AV L
Sbjct: 2361 MFDMYLKLDEAGRKFFTPLLGQYQKSRLNKEAYIKDIMKYSTVIEAGNVQPQTFEDAVRL 2420
Query: 1753 LIQDLNELGFETCQYVTDEEVIFNALNMKSAVGALYGGKKREYFKDFTQEMKEQILKQSC 1574
LIQDL+ELGFETCQY+TDE+VIFNALNMKSAVGALYGGKK++YFKDFTQEMKE ILKQSC
Sbjct: 2421 LIQDLSELGFETCQYITDEDVIFNALNMKSAVGALYGGKKKDYFKDFTQEMKETILKQSC 2480
Query: 1573 ARLYTGKMGLWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLGGKTCVDDFNNQFYELNI 1394
ARLYTGKMGLWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLGGK CVDDFNNQFYELNI
Sbjct: 2481 ARLYTGKMGLWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLGGKACVDDFNNQFYELNI 2540
Query: 1393 KGPWSVGMTKFYGGWDELLTKLPDNWIHCDADGSQFDSSLSPYLINAVLNIRLHFMESWD 1214
KGPWSVGMTKFYGGW+ELLTKLPD WIHCDADGSQFDSSLSPYLINAVLNIRLHFME+WD
Sbjct: 2541 KGPWSVGMTKFYGGWNELLTKLPDGWIHCDADGSQFDSSLSPYLINAVLNIRLHFMETWD 2600
Query: 1213 IGEQMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVLLALKYSLLKDGV 1034
IGEQMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVLLALKYSLLKDGV
Sbjct: 2601 IGEQMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVLLALKYSLLKDGV 2660
Query: 1033 KAEMHKQIIRYFVNGDDLLISIDPEYESLLDTMQGNFKELGLKYDFNSRTKDKSELWFMS 854
+AE HKQ+I+YFVNGDDLLISIDP YE LLDTMQGNFKELGLKYDFNSRT+DK ELWFMS
Sbjct: 2661 EAEKHKQVIKYFVNGDDLLISIDPAYEGLLDTMQGNFKELGLKYDFNSRTRDKGELWFMS 2720
Query: 853 HQGKRIENIWIPKLEQERIVSILEWDRSKEPSNRMEAICAAMIESWGHTELTHQIRRFYA 674
HQGKR+E+IWIPKLEQERIVSILEWDRSKEP NRMEAICAAMIESWGH ELTHQIRRFYA
Sbjct: 2721 HQGKRVEDIWIPKLEQERIVSILEWDRSKEPGNRMEAICAAMIESWGHQELTHQIRRFYA 2780
Query: 673 WLLGQAPYSGLAEIGKAPYIAESALRKLYLDKDADQSAIEIYLKAIFEDYTTEPEDLFVY 494
WL+GQAPYSGLAEIGKAPYIAESALRKLYLDKDADQSAIE+YL+AIFEDYTTEPEDLFVY
Sbjct: 2781 WLIGQAPYSGLAEIGKAPYIAESALRKLYLDKDADQSAIEVYLRAIFEDYTTEPEDLFVY 2840
Query: 493 HQSGEDTLDAGTSDPSRSKKQEGPKPAQGESSATEGFEPADDPTRKGKQQTVINLEKDVN 314
HQSG+DTLDAGTS PS+++KQE QG + EGFEPADDPT K KQQTVINLEKDVN
Sbjct: 2841 HQSGDDTLDAGTSAPSKARKQESASSTQGIAPTMEGFEPADDPTGKSKQQTVINLEKDVN 2900
Query: 313 VGTMGTFAIPRLKGLATKMNMPRVRGKAAMNLDHLLLYNPEQVDLANTRATRKQFDTWYD 134
VGT+GTFA+PRLKGLATKM+MPRVRGKAAMNLDHLL+YNPEQVDLANTRATRKQFDTWYD
Sbjct: 2901 VGTVGTFAVPRLKGLATKMSMPRVRGKAAMNLDHLLVYNPEQVDLANTRATRKQFDTWYD 2960
Query: 133 GVKRDYELDDSSMQIILNGLMVWCIENGTSPNVNGMWVMMDGEE 2
GVKRDYELDDSSMQIILNGLMVWCIENGTSPN+NGMWVMMDGEE
Sbjct: 2961 GVKRDYELDDSSMQIILNGLMVWCIENGTSPNINGMWVMMDGEE 3004
>dbj|BAF31166.1| polyprotein [Turnip mosaic virus]
Length = 3164
Score = 1649 bits (4270), Expect = 0.0
Identities = 784/1186 (66%), Positives = 959/1186 (80%), Gaps = 2/1186 (0%)
Frame = -3
Query: 3553 RNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDIMIMIGVLLGGLMMVYKQFRN 3374
R+++S +GAL+AV+HQ+ MS+ KLKG+WNK LITRD++++ GVL GGL MV + R+
Sbjct: 1856 RHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDVLVLCGVLGGGLWMVIQHLRS 1915
Query: 3373 QMSEEVYHEAKGKXXXXXXXXXXXXDNKLGREVYGDDGTMEHYFGEAYTKKGKTSGRTHG 3194
++SE V HEAKGK DNK+GREVYGDD T+EH+FG+AYTKKGK+ GRT G
Sbjct: 1916 KISEPVTHEAKGKRQRQKLKFRNTRDNKMGREVYGDDDTIEHFFGDAYTKKGKSKGRTRG 1975
Query: 3193 MGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQEHFTKIRSDMIESGE 3014
+G K RKF+NMY FDPEDFSAVRFVD LTGATLD+ P+TD+ LVQEHF IR D++ E
Sbjct: 1976 LGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPLTDITLVQEHFGNIRMDLLGEDE 2035
Query: 3013 LESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANKPTIAGFPEREYELRQTGQP 2834
L+S + K + AYYMNN+TGKAL+VDLTPH PL VC TIAGFPERE+ELRQTG+
Sbjct: 2036 LDSNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKVCDLHATIAGFPEREHELRQTGKA 2095
Query: 2833 KAISLKDVPKANDLSELVQHESASLHRGLRDYNPISNNICKLINRSEGERDTMYGLGFGP 2654
+ I++ +VP+AN+ V HES S+ RGLRDYNPISNNIC L N S+G +++YG+GFGP
Sbjct: 2096 QPINIDEVPRANNELVPVDHESNSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGP 2155
Query: 2653 IIITNRHLFEHNGGELDIKTRHGDFLIANMTKLQLYPVPNRDLILIRLPKDIPPFPQKLQ 2474
+I+TNRHLFE N GEL IK+RHG+F+I N T+L L P+P+RDL+LIRLPKDIPPFPQKL
Sbjct: 2156 LILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHLLPIPDRDLLLIRLPKDIPPFPQKLG 2215
Query: 2473 FRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWITTKDGQCGLPLVSTR 2294
FRQPE+ E+ICMVGSNFQ KS+T+ VSETS I+P+++ FWKHWI+TKDGQCG P+VST+
Sbjct: 2216 FRQPEKGERICMVGSNFQTKSITSIVSETSTIMPVENSQFWKHWISTKDGQCGSPMVSTK 2275
Query: 2293 DGNIVGIHSLGSFNNTINYFASFPENFVNQYLSTPENHHWIQHWRYNTDNISWGALKISN 2114
DG I+G+HSL +F N+INYFA+FP+NF +YL T E H W++HW+YNT ISWG+L I
Sbjct: 2276 DGKILGLHSLANFQNSINYFAAFPDNFAEKYLHTIEAHEWVKHWKYNTSAISWGSLNIQA 2335
Query: 2113 EAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASCPNQLVTKHVVKGKCP 1934
P+GLFK +KLI DL+S V Q ++ +W++ QL+GNLKAIA CP+QLVTKH VKGKC
Sbjct: 2336 SQPSGLFKVSKLISDLDSTAVYAQTQQNRWMFEQLNGNLKAIAHCPSQLVTKHTVKGKCQ 2395
Query: 1933 MFDMYLKLDEEGRKFFTPLLGQYQKSRLNKEAYIKDIMKYSTVIEAGNVQPRTFEEAVEL 1754
MFD+YLKL +E R++F P+LGQYQKS+LN+EAY KD++KY+T IEAGN+ FE+ VE+
Sbjct: 2396 MFDLYLKLHDEAREYFQPMLGQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEI 2455
Query: 1753 LIQDLNELGFETCQYVTDEEVIFNALNMKSAVGALYGGKKREYFKDFTQEMKEQILKQSC 1574
+I DL GFETC YVTDE IF ALNMKSAVGALY GKK++YF +FT EMKE+ILKQSC
Sbjct: 2456 VISDLRGYGFETCNYVTDENDIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSC 2515
Query: 1573 ARLYTGKMGLWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLGGKTCVDDFNNQFYELNI 1394
RL+ GKMG+WNGSLKAELRPLEKV+ANKTRTFTAAPLDTLLGGK CVDDFNNQFY+ N+
Sbjct: 2516 ERLFLGKMGVWNGSLKAELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNL 2575
Query: 1393 KGPWSVGMTKFYGGWDELLTKLPDNWIHCDADGSQFDSSLSPYLINAVLNIRLHFMESWD 1214
+ PWSVGMTKFY GWD LL LPD+W++CDADGSQFDSSLSPYLINAVLNIRL FME WD
Sbjct: 2576 RAPWSVGMTKFYCGWDRLLESLPDSWVYCDADGSQFDSSLSPYLINAVLNIRLEFMEEWD 2635
Query: 1213 IGEQMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVLLALKYSLLKDGV 1034
+GE MLRNLYTEIVYTPI+TPDGT+VKKFKGNNSGQPSTVVDNTLMV+LA+ YSL K G+
Sbjct: 2636 VGEVMLRNLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGI 2695
Query: 1033 KAEMHKQIIRYFVNGDDLLISIDPEYESLLDTMQGNFKELGLKYDFNSRTKDKSELWFMS 854
+E+ IIR+FVNGDDLL+S+ PEYE +LDTM NF+ELGLKY F+SRTK+K +LWFMS
Sbjct: 2696 PSELRNSIIRFFVNGDDLLLSVHPEYEYILDTMADNFRELGLKYTFDSRTKEKGDLWFMS 2755
Query: 853 HQGKRIENIWIPKLEQERIVSILEWDRSKEPSNRMEAICAAMIESWGHTELTHQIRRFYA 674
HQG + E IWIPKLE ERIVSILEWDRSKEP +R+EAICAAMIESWG+ +LTH+IR+FYA
Sbjct: 2756 HQGHKREGIWIPKLEPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYA 2815
Query: 673 WLLGQAPYSGLAEIGKAPYIAESALRKLYLDKDADQSAIEIYLKAIFEDYTTEPEDLFVY 494
W++ QAP+S LA+ GKAPYIAE+ALRKLYLDK+ Q + YL+AIFEDY + + VY
Sbjct: 2816 WMIEQAPFSSLAQEGKAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDY-EDGAEACVY 2874
Query: 493 HQSGEDTLDAGTSDPSRSKKQEGPKPAQGESSATEGFEPADDPTRKGKQ--QTVINLEKD 320
HQ+GE TLDAG +D + ++E + + E + A +KGK Q +K+
Sbjct: 2875 HQAGE-TLDAGLTDEQKQAEKEKKEREKAEKERERQKQLA---LKKGKNAAQEEGERDKE 2930
Query: 319 VNVGTMGTFAIPRLKGLATKMNMPRVRGKAAMNLDHLLLYNPEQVDLANTRATRKQFDTW 140
VN GT GTF++PRLK L +KM +PR + A+NLDHL+LY PEQ DL+NTR+TRKQFDTW
Sbjct: 2931 VNAGTSGTFSVPRLKSLTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNTRSTRKQFDTW 2990
Query: 139 YDGVKRDYELDDSSMQIILNGLMVWCIENGTSPNVNGMWVMMDGEE 2
++GV DYEL + MQIILNGLMVWCIENGTSPN+NGMWVMMDG++
Sbjct: 2991 FEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDD 3036
>dbj|BAD69822.1| polyprotein [Turnip mosaic virus (isolate UK1)]
Length = 3164
Score = 1648 bits (4267), Expect = 0.0
Identities = 784/1186 (66%), Positives = 960/1186 (80%), Gaps = 2/1186 (0%)
Frame = -3
Query: 3553 RNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDIMIMIGVLLGGLMMVYKQFRN 3374
R+++S +GAL+AV+HQ+ MS+ KLKG+WNK LITRD++++ GVL GGL MV++ R+
Sbjct: 1856 RHFMSEYGALEAVHHQNTSEMSKFLKLKGKWNKTLITRDVLVLCGVLGGGLWMVFQHLRS 1915
Query: 3373 QMSEEVYHEAKGKXXXXXXXXXXXXDNKLGREVYGDDGTMEHYFGEAYTKKGKTSGRTHG 3194
+MSE V HEAKGK DNK+GREVYGDD T+EH+FG+AYTKKGK+ GRT G
Sbjct: 1916 KMSEPVTHEAKGKRQRQKLKFRXARDNKMGREVYGDDDTIEHFFGDAYTKKGKSKGRTRG 1975
Query: 3193 MGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQEHFTKIRSDMIESGE 3014
+G K RKF+NMY FDPEDFSAVRFVD LTGATLD+ P+TD+ LVQEHF IR D++ E
Sbjct: 1976 IGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPLTDITLVQEHFGNIRMDLLGEDE 2035
Query: 3013 LESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANKPTIAGFPEREYELRQTGQP 2834
L+S + K + AYYMNN+TGKAL+VDLTPH PL VCA TIAGFPERE ELRQTG+
Sbjct: 2036 LDSNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKVCALHATIAGFPERENELRQTGKA 2095
Query: 2833 KAISLKDVPKANDLSELVQHESASLHRGLRDYNPISNNICKLINRSEGERDTMYGLGFGP 2654
+ I++ +VP+AN+ V HES S+ RGLRDYNPISNNIC L N S+G +++YG+GFGP
Sbjct: 2096 QPINIDEVPRANNELVPVDHESNSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGP 2155
Query: 2653 IIITNRHLFEHNGGELDIKTRHGDFLIANMTKLQLYPVPNRDLILIRLPKDIPPFPQKLQ 2474
+I+TNRHLFE N GEL IK+RHG+F+I N T+L L P+P+RDL+LIRLPKD+PPFPQKL
Sbjct: 2156 LILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHLLPIPDRDLLLIRLPKDVPPFPQKLG 2215
Query: 2473 FRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWITTKDGQCGLPLVSTR 2294
FRQPE+ E+ICMVGSNFQ KS+T+ VSETS I+P+++ FWKHWI+TKDGQCG P+VST+
Sbjct: 2216 FRQPEKGERICMVGSNFQTKSITSIVSETSTIMPVENSQFWKHWISTKDGQCGSPMVSTK 2275
Query: 2293 DGNIVGIHSLGSFNNTINYFASFPENFVNQYLSTPENHHWIQHWRYNTDNISWGALKISN 2114
DG I+G+HSL +F N+INYFA+FP++F +YL T E H W++HW+YNT ISWG+L I
Sbjct: 2276 DGKILGLHSLANFQNSINYFAAFPDDFAEKYLHTIEAHEWVKHWKYNTSAISWGSLNIQA 2335
Query: 2113 EAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASCPNQLVTKHVVKGKCP 1934
P+GLFK +KLI DL+S V Q ++ +W++ QL+GNLKAIA CP+QLVTKH VKGKC
Sbjct: 2336 SQPSGLFKVSKLISDLDSTAVYAQTQQNRWMFEQLNGNLKAIAHCPSQLVTKHTVKGKCQ 2395
Query: 1933 MFDMYLKLDEEGRKFFTPLLGQYQKSRLNKEAYIKDIMKYSTVIEAGNVQPRTFEEAVEL 1754
MFD+YLKL +E R++F P+LGQYQKS+LN+EAY KD++KY+T IEAGN+ FE+ VE+
Sbjct: 2396 MFDLYLKLHDEAREYFQPMLGQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEI 2455
Query: 1753 LIQDLNELGFETCQYVTDEEVIFNALNMKSAVGALYGGKKREYFKDFTQEMKEQILKQSC 1574
++ DL GFETC YVTDE IF ALNMKSAVGALY GKK++YF +FT EMKE+ILKQSC
Sbjct: 2456 VVSDLRGYGFETCNYVTDENDIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSC 2515
Query: 1573 ARLYTGKMGLWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLGGKTCVDDFNNQFYELNI 1394
RL+ GKMG+WNGSLKAELRPLEKV+ANKTRTFTAAPLDTLLGGK CVDDFNNQFY+ N+
Sbjct: 2516 ERLFLGKMGVWNGSLKAELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNL 2575
Query: 1393 KGPWSVGMTKFYGGWDELLTKLPDNWIHCDADGSQFDSSLSPYLINAVLNIRLHFMESWD 1214
+ PWSVGMTKFY GWD LL LPD W++CDADGSQFDSSLSPYLINAVLNIRL FME WD
Sbjct: 2576 RAPWSVGMTKFYCGWDRLLESLPDGWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWD 2635
Query: 1213 IGEQMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVLLALKYSLLKDGV 1034
IGE MLRNLYTEIVYTPI+TPDGT+VKKFKGNNSGQPSTVVDNTLMV+LA+ YSL K G+
Sbjct: 2636 IGEVMLRNLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGI 2695
Query: 1033 KAEMHKQIIRYFVNGDDLLISIDPEYESLLDTMQGNFKELGLKYDFNSRTKDKSELWFMS 854
+E+ IIR+FVNGDDLL+S+ PEYE +LDTM NF+ELGLKY F+SRT++K +LWFMS
Sbjct: 2696 PSELRDSIIRFFVNGDDLLLSVHPEYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMS 2755
Query: 853 HQGKRIENIWIPKLEQERIVSILEWDRSKEPSNRMEAICAAMIESWGHTELTHQIRRFYA 674
HQG + E IWIPKLE ERIVSILEWDRSKEP +R+EAICAAMIESWG+ +LTH+IR+FYA
Sbjct: 2756 HQGHKREGIWIPKLEPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYA 2815
Query: 673 WLLGQAPYSGLAEIGKAPYIAESALRKLYLDKDADQSAIEIYLKAIFEDYTTEPEDLFVY 494
W++ QAP+S LA+ GKAPYIAE+ALRKLYLDK+ Q + YL+AIFEDY + + VY
Sbjct: 2816 WMIEQAPFSSLAQEGKAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDY-EDGAEACVY 2874
Query: 493 HQSGEDTLDAGTSDPSRSKKQEGPKPAQGESSATEGFEPADDPTRKGKQ--QTVINLEKD 320
HQ+GE TLDAG +D + ++E + + E + A +KGK Q +K+
Sbjct: 2875 HQAGE-TLDAGLTDEQKQAEKEKKEREKAEKERERQKQLA---LKKGKDVAQEEGKRDKE 2930
Query: 319 VNVGTMGTFAIPRLKGLATKMNMPRVRGKAAMNLDHLLLYNPEQVDLANTRATRKQFDTW 140
VN GT GTF++PRLK L +KM +PR + A+NLDHL+LY PEQ DL+NTR+TRKQFDTW
Sbjct: 2931 VNAGTSGTFSVPRLKSLTSKMRVPRYEKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTW 2990
Query: 139 YDGVKRDYELDDSSMQIILNGLMVWCIENGTSPNVNGMWVMMDGEE 2
++GV DYEL + MQIILNGLMVWCIENGTSPN+NGMWVMMDG++
Sbjct: 2991 FEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDD 3036
>dbj|BAD69820.1| polyprotein [Turnip mosaic virus (isolate UK1)]
Length = 3164
Score = 1647 bits (4266), Expect = 0.0
Identities = 783/1186 (66%), Positives = 959/1186 (80%), Gaps = 2/1186 (0%)
Frame = -3
Query: 3553 RNYISNFGALDAVYHQSEKAMSEHFKLKGRWNKPLITRDIMIMIGVLLGGLMMVYKQFRN 3374
R+++S +GAL+AV+HQ+ MS+ KLKG+WNK LITRD++++ GVL GGL MV++ R+
Sbjct: 1856 RHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDVLVLCGVLGGGLWMVFQHLRS 1915
Query: 3373 QMSEEVYHEAKGKXXXXXXXXXXXXDNKLGREVYGDDGTMEHYFGEAYTKKGKTSGRTHG 3194
+MSE V HEAKGK DNK+GREVYGDD T+EH+FG+AYTKKGK+ GRT G
Sbjct: 1916 KMSEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDTIEHFFGDAYTKKGKSKGRTRG 1975
Query: 3193 MGQKQRKFVNMYSFDPEDFSAVRFVDVLTGATLDETPITDLHLVQEHFTKIRSDMIESGE 3014
+G K RKF+NMY FDPEDFSAVRFVD LTGATLD+ P+TD+ LVQEHF IR D++ E
Sbjct: 1976 IGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPLTDITLVQEHFGNIRMDLLGEDE 2035
Query: 3013 LESQHLYSGKGVNAYYMNNRTGKALQVDLTPHNPLLVCANKPTIAGFPEREYELRQTGQP 2834
L+S + K + AYYMNN+TGKAL+VDLTPH PL VCA TIAGFPERE ELRQTG+
Sbjct: 2036 LDSNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKVCALHATIAGFPERENELRQTGKA 2095
Query: 2833 KAISLKDVPKANDLSELVQHESASLHRGLRDYNPISNNICKLINRSEGERDTMYGLGFGP 2654
+ I++ +VP+AN+ V HES S+ RGLRDYNPISNNIC L N S+G +++YG+GFGP
Sbjct: 2096 QPINIDEVPRANNELVPVDHESNSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGP 2155
Query: 2653 IIITNRHLFEHNGGELDIKTRHGDFLIANMTKLQLYPVPNRDLILIRLPKDIPPFPQKLQ 2474
+I+TNRHLFE N GEL IK+RHG+F+I N T+L L P+P+RDL+LIRLPKD+PPFPQKL
Sbjct: 2156 LILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHLLPIPDRDLLLIRLPKDVPPFPQKLG 2215
Query: 2473 FRQPERNEKICMVGSNFQAKSVTNTVSETSIILPMDDCHFWKHWITTKDGQCGLPLVSTR 2294
FRQPE+ E+ICMVGSNFQ KS+T+ VSETS I+P+++ FWKHWI+TKDGQCG P+VST+
Sbjct: 2216 FRQPEKGERICMVGSNFQTKSITSIVSETSTIMPVENSQFWKHWISTKDGQCGSPMVSTK 2275
Query: 2293 DGNIVGIHSLGSFNNTINYFASFPENFVNQYLSTPENHHWIQHWRYNTDNISWGALKISN 2114
DG I+G+HSL +F N+INYFA+FP++F +YL T E H W++HW+YNT ISWG+L I
Sbjct: 2276 DGKILGLHSLANFQNSINYFAAFPDDFAEKYLHTIEAHEWVKHWKYNTSAISWGSLNIQA 2335
Query: 2113 EAPTGLFKTTKLIGDLESLFVRQQMKREKWVYTQLDGNLKAIASCPNQLVTKHVVKGKCP 1934
P+GLFK +KLI DL+S V Q ++ +W++ QL+GNLKAIA CP+QLVTKH VKGKC
Sbjct: 2336 SQPSGLFKVSKLISDLDSTAVYAQTQQNRWMFEQLNGNLKAIAHCPSQLVTKHTVKGKCQ 2395
Query: 1933 MFDMYLKLDEEGRKFFTPLLGQYQKSRLNKEAYIKDIMKYSTVIEAGNVQPRTFEEAVEL 1754
MFD+YLKL +E R++F P+LGQYQKS+LN+EAY KD++KY+T IEAGN+ FE+ VE+
Sbjct: 2396 MFDLYLKLHDEAREYFQPMLGQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEI 2455
Query: 1753 LIQDLNELGFETCQYVTDEEVIFNALNMKSAVGALYGGKKREYFKDFTQEMKEQILKQSC 1574
++ DL GFETC YVTDE IF ALNMKSAVGALY GKK++YF +FT EMKE+ILKQSC
Sbjct: 2456 VVSDLRGYGFETCNYVTDENDIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSC 2515
Query: 1573 ARLYTGKMGLWNGSLKAELRPLEKVQANKTRTFTAAPLDTLLGGKTCVDDFNNQFYELNI 1394
RL+ GKMG+WNGSLKAELRPLEKV+ANKTRTFTAAPLDTLLGGK CVDDFNNQFY+ N+
Sbjct: 2516 ERLFLGKMGVWNGSLKAELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNL 2575
Query: 1393 KGPWSVGMTKFYGGWDELLTKLPDNWIHCDADGSQFDSSLSPYLINAVLNIRLHFMESWD 1214
+ PWSVGMTKFY GWD LL LPD W++CDADGSQFDSSLSPYLINAVLNIRL FME WD
Sbjct: 2576 RAPWSVGMTKFYCGWDRLLESLPDGWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEEWD 2635
Query: 1213 IGEQMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVLLALKYSLLKDGV 1034
IGE MLRNLYTEIVYTPI+TPDGT+VKKFKGNNSGQPSTVVDNTLMV+LA+ YSL K G+
Sbjct: 2636 IGEVMLRNLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGI 2695
Query: 1033 KAEMHKQIIRYFVNGDDLLISIDPEYESLLDTMQGNFKELGLKYDFNSRTKDKSELWFMS 854
+E+ IIR+FVNGDDLL+S+ PEYE +LDTM NF+ELGLKY F+SRT++K +LWFMS
Sbjct: 2696 PSELRDSIIRFFVNGDDLLLSVHPEYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMS 2755
Query: 853 HQGKRIENIWIPKLEQERIVSILEWDRSKEPSNRMEAICAAMIESWGHTELTHQIRRFYA 674
HQG + E IWIPKLE ERIVSILEWDRSKEP +R+EAICAAMIESWG+ +LTH+IR+FYA
Sbjct: 2756 HQGHKREGIWIPKLEPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYA 2815
Query: 673 WLLGQAPYSGLAEIGKAPYIAESALRKLYLDKDADQSAIEIYLKAIFEDYTTEPEDLFVY 494
W++ QAP+S LA+ GKAPYIAE+ALRKLYLDK+ Q + YL+AIFEDY + + VY
Sbjct: 2816 WMIEQAPFSSLAQEGKAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDY-EDGAEACVY 2874
Query: 493 HQSGEDTLDAGTSDPSRSKKQEGPKPAQGESSATEGFEPADDPTRKGKQ--QTVINLEKD 320
HQ+GE TLDAG +D + ++E + + E + A +KGK Q +K+
Sbjct: 2875 HQAGE-TLDAGLTDEQKQAEKEKKEREKAEKERERQKQLA---LKKGKDVAQEEGKRDKE 2930
Query: 319 VNVGTMGTFAIPRLKGLATKMNMPRVRGKAAMNLDHLLLYNPEQVDLANTRATRKQFDTW 140
VN GT GTF++PRLK L +KM +PR + A+NLDHL+LY PEQ DL+NTR+TRKQFDTW
Sbjct: 2931 VNAGTSGTFSVPRLKSLTSKMRVPRYEKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTW 2990
Query: 139 YDGVKRDYELDDSSMQIILNGLMVWCIENGTSPNVNGMWVMMDGEE 2
++GV DYEL + MQIILNGLMVWCIENGTSPN+NGMWVMMDG++
Sbjct: 2991 FEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDD 3036