BLASTX nr result

ID: Cornus23_contig00043171 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00043171
         (410 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006359087.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosoma...   117   4e-24
ref|YP_005090371.1| ribosomal protein L2 (mitochondrion) [Phoeni...   103   4e-20
ref|YP_007905729.1| ribosomal protein L2 (mitochondrion) [Liriod...   103   5e-20
gb|AHA47111.1| ribosomal protein L2 (mitochondrion) [Amborella t...    94   5e-17
ref|YP_003433878.1| ribosomal protein large subunit 2 (mitochond...    90   7e-16
ref|YP_514664.1| ribosomal protein L2 (mitochondrion) [Oryza sat...    86   1e-14
sp|P92812.2|RM02_ORYSJ RecName: Full=60S ribosomal protein L2, m...    86   1e-14
emb|CAN61455.1| hypothetical protein VITISV_029794 [Vitis vinifera]    86   1e-14
emb|CDY71656.1| BnaUnng04510D [Brassica napus]                         80   3e-14
gb|AEN56111.1| ribosomal protein L2 [Cucumis melo subsp. melo]         84   4e-14
ref|YP_008999589.1| ribosomal protein L2 (mitochondrion) [Vaccin...    82   1e-13
pir||S46947 ribosomal protein L2 - evening primrose mitochondrio...    82   2e-13
ref|YP_002608368.1| ribosomal protein L2 [Vitis vinifera] gi|209...    82   2e-13
gb|ALF04062.1| ribosomal protein L2 (mitochondrion) [Cannabis sa...    82   2e-13
ref|YP_173485.1| ribosomal protein L2 [Nicotiana tabacum] gi|756...    81   3e-13
ref|YP_009121961.1| ribosomal protein L2 (mitochondrion) [Hyoscy...    81   3e-13
ref|XP_010314947.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosoma...    81   3e-13
ref|YP_009049780.1| ribosomal protein L2 (mitochondrion) [Capsic...    81   3e-13
gb|AIG89877.1| ribosomal protein L2 (mitochondrion) [Capsicum an...    81   3e-13
dbj|BAD83551.2| ribosomal protein L2 (mitochondrion) [Nicotiana ...    81   3e-13

>ref|XP_006359087.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L2,
           mitochondrial-like [Solanum tuberosum]
          Length = 340

 Score =  117 bits (292), Expect = 4e-24
 Identities = 57/63 (90%), Positives = 58/63 (92%)
 Frame = -3

Query: 273 KFLGRAVRGSSRTVREPSPSTGA*VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQN 94
           KFLGRAVR SS TVREPSP  GA VNTYIIASHQLEAGKMVMNCDWSKPSTSDLL+PAQN
Sbjct: 277 KFLGRAVRDSSHTVREPSPCAGAXVNTYIIASHQLEAGKMVMNCDWSKPSTSDLLQPAQN 336

Query: 93  AHT 85
           AHT
Sbjct: 337 AHT 339


>ref|YP_005090371.1| ribosomal protein L2 (mitochondrion) [Phoenix dactylifera]
           gi|343478424|gb|AEM43912.1| ribosomal protein L2
           (mitochondrion) [Phoenix dactylifera]
          Length = 558

 Score =  103 bits (258), Expect = 4e-20
 Identities = 54/69 (78%), Positives = 57/69 (82%), Gaps = 4/69 (5%)
 Frame = -3

Query: 201 VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSK 31
           VNTYI+ASHQLEAGKMVMNCDWSKPS S  LRPAQNAHTY    DLV TA KGR+EGGS+
Sbjct: 335 VNTYILASHQLEAGKMVMNCDWSKPSKSGFLRPAQNAHTYLRFQDLVRTANKGRVEGGSQ 394

Query: 30  LAAP-PLPP 7
           LAA  P PP
Sbjct: 395 LAASWPRPP 403


>ref|YP_007905729.1| ribosomal protein L2 (mitochondrion) [Liriodendron tulipifera]
           gi|480541934|gb|AGJ90427.1| ribosomal protein L2
           (mitochondrion) [Liriodendron tulipifera]
          Length = 554

 Score =  103 bits (257), Expect = 5e-20
 Identities = 54/69 (78%), Positives = 57/69 (82%), Gaps = 4/69 (5%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSKLA 25
           TYI+ASHQLEAGKMVMNCDWSKPSTS  LRPAQNAHTY    DLV TA KGR+EGGS+LA
Sbjct: 333 TYILASHQLEAGKMVMNCDWSKPSTSGFLRPAQNAHTYLRFQDLVRTANKGRVEGGSQLA 392

Query: 24  AP-PLPPLT 1
           A  P PP T
Sbjct: 393 ASWPRPPST 401


>gb|AHA47111.1| ribosomal protein L2 (mitochondrion) [Amborella trichopoda]
          Length = 632

 Score = 93.6 bits (231), Expect = 5e-17
 Identities = 47/66 (71%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSKLA 25
           TYI+ASHQLE GKMVMNCDWSKPSTS  LRPAQNAHTY    DLV TA KGR  G  + A
Sbjct: 414 TYILASHQLEVGKMVMNCDWSKPSTSGFLRPAQNAHTYLRFKDLVRTANKGREGGSQQAA 473

Query: 24  APPLPP 7
           + P PP
Sbjct: 474 SWPRPP 479


>ref|YP_003433878.1| ribosomal protein large subunit 2 (mitochondrion) [Oryza rufipogon]
           gi|285026149|dbj|BAI67982.1| ribosomal protein large
           subunit 2 (mitochondrion) [Oryza rufipogon]
           gi|285026205|dbj|BAI68037.1| ribosomal protein large
           subunit 2 (mitochondrion) [Oryza sativa Indica Group]
          Length = 504

 Score = 89.7 bits (221), Expect = 7e-16
 Identities = 48/69 (69%), Positives = 53/69 (76%), Gaps = 4/69 (5%)
 Frame = -3

Query: 201 VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSK 31
           VNTYI+ASHQLEAG MV+NCD SKPS S  LRPAQNAHTY    +L  T  KGR+EGGS+
Sbjct: 281 VNTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQ 340

Query: 30  LAAP-PLPP 7
           LAA  P PP
Sbjct: 341 LAASWPRPP 349


>ref|YP_514664.1| ribosomal protein L2 (mitochondrion) [Oryza sativa Indica Group]
           gi|194033244|ref|YP_002000581.1| ribosomal protein L2
           (mitochondrion) [Oryza sativa Japonica Group]
           gi|23495405|dbj|BAC19886.1| Ribosomal protein L2
           (mitochondrion) [Oryza sativa Japonica Group]
           gi|74100083|gb|AAZ99247.1| ribosomal protein L2
           (mitochondrion) [Oryza sativa Indica Group]
           gi|74100138|gb|AAZ99301.1| ribosomal protein L2
           (mitochondrion) [Oryza sativa Japonica Group]
           gi|74100192|gb|AAZ99354.1| ribosomal protein L2
           (mitochondrion) [Oryza sativa Japonica Group]
           gi|353685231|gb|AER12994.1| ribosomal protein L2
           (mitochondrion) [Oryza sativa Indica Group]
           gi|353685298|gb|AER13060.1| ribosomal protein L2
           (mitochondrion) [Oryza sativa Indica Group]
           gi|374277621|gb|AEZ03727.1| ribosomal protein L2
           (mitochondrion) [Oryza sativa Indica Group]
           gi|374277672|gb|AEZ03777.1| ribosomal protein L2
           (mitochondrion) [Oryza sativa Indica Group]
           gi|528540449|dbj|BAN67503.1| ribosomal protein large
           subunit 2 (mitochondrion) [Oryza rufipogon]
           gi|528540486|dbj|BAN67539.1| ribosomal protein large
           subunit 2 (mitochondrion) [Oryza rufipogon]
          Length = 502

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 46/67 (68%), Positives = 51/67 (76%), Gaps = 4/67 (5%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSKLA 25
           TYI+ASHQLEAG MV+NCD SKPS S  LRPAQNAHTY    +L  T  KGR+EGGS+LA
Sbjct: 281 TYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLA 340

Query: 24  AP-PLPP 7
           A  P PP
Sbjct: 341 ASWPRPP 347


>sp|P92812.2|RM02_ORYSJ RecName: Full=60S ribosomal protein L2, mitochondrial
           gi|218547415|sp|P0C8K6.1|RM02_ORYSA RecName: Full=60S
           ribosomal protein L2, mitochondrial
           gi|218551750|sp|Q2F969.2|RM02_ORYSI RecName: Full=60S
           ribosomal protein L2, mitochondrial
           gi|193240423|dbj|BAA11350.2| ribosomal protein L2
           (mitochondrion) [Oryza sativa Japonica Group]
          Length = 502

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 46/67 (68%), Positives = 51/67 (76%), Gaps = 4/67 (5%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSKLA 25
           TYI+ASHQLEAG MV+NCD SKPS S  LRPAQNAHTY    +L  T  KGR+EGGS+LA
Sbjct: 281 TYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLA 340

Query: 24  AP-PLPP 7
           A  P PP
Sbjct: 341 ASWPRPP 347


>emb|CAN61455.1| hypothetical protein VITISV_029794 [Vitis vinifera]
          Length = 336

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 39/40 (97%), Positives = 40/40 (100%)
 Frame = -3

Query: 201 VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 82
           VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPA+NAHTY
Sbjct: 297 VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPARNAHTY 336


>emb|CDY71656.1| BnaUnng04510D [Brassica napus]
          Length = 104

 Score = 79.7 bits (195), Expect(2) = 3e-14
 Identities = 44/74 (59%), Positives = 46/74 (62%)
 Frame = -3

Query: 309 FI*NFYLERGGFKFLGRAVRGSSRTVREPSPSTGA*VNTYIIASHQLEAGKMVMNCDWSK 130
           F+  F   RGGFKFLGRAV                  NTYIIASHQLEAGKMVMNCDWSK
Sbjct: 42  FLKKFDSWRGGFKFLGRAV------------------NTYIIASHQLEAGKMVMNCDWSK 83

Query: 129 PSTSDLLRPAQNAH 88
           PSTS   + AQN H
Sbjct: 84  PSTSSFSQSAQNDH 97



 Score = 25.0 bits (53), Expect(2) = 3e-14
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -1

Query: 401 AKKSRNVAASLLAP 360
           +KKSRN AASL+AP
Sbjct: 24  SKKSRNEAASLIAP 37


>gb|AEN56111.1| ribosomal protein L2 [Cucumis melo subsp. melo]
          Length = 354

 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY*DLVHTAKKGRME 43
           TY IASH+  AGKMVMNCDWSKPSTSDLLRPAQN HTY DL+H  ++ + E
Sbjct: 304 TYFIASHKCSAGKMVMNCDWSKPSTSDLLRPAQNGHTYSDLIHITQRRKAE 354


>ref|YP_008999589.1| ribosomal protein L2 (mitochondrion) [Vaccinium macrocarpon]
           gi|549531664|gb|AGX28803.1| ribosomal protein L2
           (mitochondrion) [Vaccinium macrocarpon]
          Length = 335

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 82
           TYIIASH+LEAGKMVMNCDWSKPSTSDLLRPAQNAHTY
Sbjct: 298 TYIIASHELEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 335


>pir||S46947 ribosomal protein L2 - evening primrose mitochondrion
           (mitochondrion) [Oenothera villaricae]
           gi|516394|emb|CAA56451.1| 70s mitochondrial ribosomal
           protein L2 [Oenothera berteroana]
          Length = 332

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 37/38 (97%), Positives = 37/38 (97%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 82
           TYIIASHQLEAGKMVMNCDWSKPSTSD LRPAQNAHTY
Sbjct: 295 TYIIASHQLEAGKMVMNCDWSKPSTSDFLRPAQNAHTY 332


>ref|YP_002608368.1| ribosomal protein L2 [Vitis vinifera] gi|209954165|emb|CAQ77612.1|
           ribosomal protein L2 [Vitis vinifera]
           gi|239764759|gb|ACS15228.1| ribosomal protein L2 [Vitis
           vinifera]
          Length = 334

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 82
           TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPA+NAHTY
Sbjct: 297 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPARNAHTY 334


>gb|ALF04062.1| ribosomal protein L2 (mitochondrion) [Cannabis sativa]
          Length = 337

 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 82
           TYIIASHQLEAGKMVMNC+WSKPSTSDLLRPAQNAHTY
Sbjct: 300 TYIIASHQLEAGKMVMNCNWSKPSTSDLLRPAQNAHTY 337


>ref|YP_173485.1| ribosomal protein L2 [Nicotiana tabacum]
           gi|756762100|gb|AJM70209.1| ribosomal protein L2
           (mitochondrion) [Nicotiana tabacum/Hyoscyamus niger
           cybrid]
          Length = 331

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
           TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 294 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 330


>ref|YP_009121961.1| ribosomal protein L2 (mitochondrion) [Hyoscyamus niger]
           gi|756142178|gb|AJK91389.1| ribosomal protein L2
           (mitochondrion) [Hyoscyamus niger]
          Length = 331

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
           TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 294 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 330


>ref|XP_010314947.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L2,
           mitochondrial, partial [Solanum lycopersicum]
          Length = 323

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
           TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 286 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 322


>ref|YP_009049780.1| ribosomal protein L2 (mitochondrion) [Capsicum annuum]
           gi|667752052|gb|AIG90138.1| ribosomal protein L2
           (mitochondrion) [Capsicum annuum]
          Length = 332

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
           TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 295 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 331


>gb|AIG89877.1| ribosomal protein L2 (mitochondrion) [Capsicum annuum]
          Length = 329

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
           TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 292 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 328


>dbj|BAD83551.2| ribosomal protein L2 (mitochondrion) [Nicotiana tabacum]
          Length = 331

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = -3

Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
           TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 294 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 330


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