BLASTX nr result
ID: Cornus23_contig00043171
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00043171
(410 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006359087.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosoma... 117 4e-24
ref|YP_005090371.1| ribosomal protein L2 (mitochondrion) [Phoeni... 103 4e-20
ref|YP_007905729.1| ribosomal protein L2 (mitochondrion) [Liriod... 103 5e-20
gb|AHA47111.1| ribosomal protein L2 (mitochondrion) [Amborella t... 94 5e-17
ref|YP_003433878.1| ribosomal protein large subunit 2 (mitochond... 90 7e-16
ref|YP_514664.1| ribosomal protein L2 (mitochondrion) [Oryza sat... 86 1e-14
sp|P92812.2|RM02_ORYSJ RecName: Full=60S ribosomal protein L2, m... 86 1e-14
emb|CAN61455.1| hypothetical protein VITISV_029794 [Vitis vinifera] 86 1e-14
emb|CDY71656.1| BnaUnng04510D [Brassica napus] 80 3e-14
gb|AEN56111.1| ribosomal protein L2 [Cucumis melo subsp. melo] 84 4e-14
ref|YP_008999589.1| ribosomal protein L2 (mitochondrion) [Vaccin... 82 1e-13
pir||S46947 ribosomal protein L2 - evening primrose mitochondrio... 82 2e-13
ref|YP_002608368.1| ribosomal protein L2 [Vitis vinifera] gi|209... 82 2e-13
gb|ALF04062.1| ribosomal protein L2 (mitochondrion) [Cannabis sa... 82 2e-13
ref|YP_173485.1| ribosomal protein L2 [Nicotiana tabacum] gi|756... 81 3e-13
ref|YP_009121961.1| ribosomal protein L2 (mitochondrion) [Hyoscy... 81 3e-13
ref|XP_010314947.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosoma... 81 3e-13
ref|YP_009049780.1| ribosomal protein L2 (mitochondrion) [Capsic... 81 3e-13
gb|AIG89877.1| ribosomal protein L2 (mitochondrion) [Capsicum an... 81 3e-13
dbj|BAD83551.2| ribosomal protein L2 (mitochondrion) [Nicotiana ... 81 3e-13
>ref|XP_006359087.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L2,
mitochondrial-like [Solanum tuberosum]
Length = 340
Score = 117 bits (292), Expect = 4e-24
Identities = 57/63 (90%), Positives = 58/63 (92%)
Frame = -3
Query: 273 KFLGRAVRGSSRTVREPSPSTGA*VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQN 94
KFLGRAVR SS TVREPSP GA VNTYIIASHQLEAGKMVMNCDWSKPSTSDLL+PAQN
Sbjct: 277 KFLGRAVRDSSHTVREPSPCAGAXVNTYIIASHQLEAGKMVMNCDWSKPSTSDLLQPAQN 336
Query: 93 AHT 85
AHT
Sbjct: 337 AHT 339
>ref|YP_005090371.1| ribosomal protein L2 (mitochondrion) [Phoenix dactylifera]
gi|343478424|gb|AEM43912.1| ribosomal protein L2
(mitochondrion) [Phoenix dactylifera]
Length = 558
Score = 103 bits (258), Expect = 4e-20
Identities = 54/69 (78%), Positives = 57/69 (82%), Gaps = 4/69 (5%)
Frame = -3
Query: 201 VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSK 31
VNTYI+ASHQLEAGKMVMNCDWSKPS S LRPAQNAHTY DLV TA KGR+EGGS+
Sbjct: 335 VNTYILASHQLEAGKMVMNCDWSKPSKSGFLRPAQNAHTYLRFQDLVRTANKGRVEGGSQ 394
Query: 30 LAAP-PLPP 7
LAA P PP
Sbjct: 395 LAASWPRPP 403
>ref|YP_007905729.1| ribosomal protein L2 (mitochondrion) [Liriodendron tulipifera]
gi|480541934|gb|AGJ90427.1| ribosomal protein L2
(mitochondrion) [Liriodendron tulipifera]
Length = 554
Score = 103 bits (257), Expect = 5e-20
Identities = 54/69 (78%), Positives = 57/69 (82%), Gaps = 4/69 (5%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSKLA 25
TYI+ASHQLEAGKMVMNCDWSKPSTS LRPAQNAHTY DLV TA KGR+EGGS+LA
Sbjct: 333 TYILASHQLEAGKMVMNCDWSKPSTSGFLRPAQNAHTYLRFQDLVRTANKGRVEGGSQLA 392
Query: 24 AP-PLPPLT 1
A P PP T
Sbjct: 393 ASWPRPPST 401
>gb|AHA47111.1| ribosomal protein L2 (mitochondrion) [Amborella trichopoda]
Length = 632
Score = 93.6 bits (231), Expect = 5e-17
Identities = 47/66 (71%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSKLA 25
TYI+ASHQLE GKMVMNCDWSKPSTS LRPAQNAHTY DLV TA KGR G + A
Sbjct: 414 TYILASHQLEVGKMVMNCDWSKPSTSGFLRPAQNAHTYLRFKDLVRTANKGREGGSQQAA 473
Query: 24 APPLPP 7
+ P PP
Sbjct: 474 SWPRPP 479
>ref|YP_003433878.1| ribosomal protein large subunit 2 (mitochondrion) [Oryza rufipogon]
gi|285026149|dbj|BAI67982.1| ribosomal protein large
subunit 2 (mitochondrion) [Oryza rufipogon]
gi|285026205|dbj|BAI68037.1| ribosomal protein large
subunit 2 (mitochondrion) [Oryza sativa Indica Group]
Length = 504
Score = 89.7 bits (221), Expect = 7e-16
Identities = 48/69 (69%), Positives = 53/69 (76%), Gaps = 4/69 (5%)
Frame = -3
Query: 201 VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSK 31
VNTYI+ASHQLEAG MV+NCD SKPS S LRPAQNAHTY +L T KGR+EGGS+
Sbjct: 281 VNTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQ 340
Query: 30 LAAP-PLPP 7
LAA P PP
Sbjct: 341 LAASWPRPP 349
>ref|YP_514664.1| ribosomal protein L2 (mitochondrion) [Oryza sativa Indica Group]
gi|194033244|ref|YP_002000581.1| ribosomal protein L2
(mitochondrion) [Oryza sativa Japonica Group]
gi|23495405|dbj|BAC19886.1| Ribosomal protein L2
(mitochondrion) [Oryza sativa Japonica Group]
gi|74100083|gb|AAZ99247.1| ribosomal protein L2
(mitochondrion) [Oryza sativa Indica Group]
gi|74100138|gb|AAZ99301.1| ribosomal protein L2
(mitochondrion) [Oryza sativa Japonica Group]
gi|74100192|gb|AAZ99354.1| ribosomal protein L2
(mitochondrion) [Oryza sativa Japonica Group]
gi|353685231|gb|AER12994.1| ribosomal protein L2
(mitochondrion) [Oryza sativa Indica Group]
gi|353685298|gb|AER13060.1| ribosomal protein L2
(mitochondrion) [Oryza sativa Indica Group]
gi|374277621|gb|AEZ03727.1| ribosomal protein L2
(mitochondrion) [Oryza sativa Indica Group]
gi|374277672|gb|AEZ03777.1| ribosomal protein L2
(mitochondrion) [Oryza sativa Indica Group]
gi|528540449|dbj|BAN67503.1| ribosomal protein large
subunit 2 (mitochondrion) [Oryza rufipogon]
gi|528540486|dbj|BAN67539.1| ribosomal protein large
subunit 2 (mitochondrion) [Oryza rufipogon]
Length = 502
Score = 85.9 bits (211), Expect = 1e-14
Identities = 46/67 (68%), Positives = 51/67 (76%), Gaps = 4/67 (5%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSKLA 25
TYI+ASHQLEAG MV+NCD SKPS S LRPAQNAHTY +L T KGR+EGGS+LA
Sbjct: 281 TYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLA 340
Query: 24 AP-PLPP 7
A P PP
Sbjct: 341 ASWPRPP 347
>sp|P92812.2|RM02_ORYSJ RecName: Full=60S ribosomal protein L2, mitochondrial
gi|218547415|sp|P0C8K6.1|RM02_ORYSA RecName: Full=60S
ribosomal protein L2, mitochondrial
gi|218551750|sp|Q2F969.2|RM02_ORYSI RecName: Full=60S
ribosomal protein L2, mitochondrial
gi|193240423|dbj|BAA11350.2| ribosomal protein L2
(mitochondrion) [Oryza sativa Japonica Group]
Length = 502
Score = 85.9 bits (211), Expect = 1e-14
Identities = 46/67 (68%), Positives = 51/67 (76%), Gaps = 4/67 (5%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY---*DLVHTAKKGRMEGGSKLA 25
TYI+ASHQLEAG MV+NCD SKPS S LRPAQNAHTY +L T KGR+EGGS+LA
Sbjct: 281 TYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLA 340
Query: 24 AP-PLPP 7
A P PP
Sbjct: 341 ASWPRPP 347
>emb|CAN61455.1| hypothetical protein VITISV_029794 [Vitis vinifera]
Length = 336
Score = 85.9 bits (211), Expect = 1e-14
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = -3
Query: 201 VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 82
VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPA+NAHTY
Sbjct: 297 VNTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPARNAHTY 336
>emb|CDY71656.1| BnaUnng04510D [Brassica napus]
Length = 104
Score = 79.7 bits (195), Expect(2) = 3e-14
Identities = 44/74 (59%), Positives = 46/74 (62%)
Frame = -3
Query: 309 FI*NFYLERGGFKFLGRAVRGSSRTVREPSPSTGA*VNTYIIASHQLEAGKMVMNCDWSK 130
F+ F RGGFKFLGRAV NTYIIASHQLEAGKMVMNCDWSK
Sbjct: 42 FLKKFDSWRGGFKFLGRAV------------------NTYIIASHQLEAGKMVMNCDWSK 83
Query: 129 PSTSDLLRPAQNAH 88
PSTS + AQN H
Sbjct: 84 PSTSSFSQSAQNDH 97
Score = 25.0 bits (53), Expect(2) = 3e-14
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1
Query: 401 AKKSRNVAASLLAP 360
+KKSRN AASL+AP
Sbjct: 24 SKKSRNEAASLIAP 37
>gb|AEN56111.1| ribosomal protein L2 [Cucumis melo subsp. melo]
Length = 354
Score = 84.0 bits (206), Expect = 4e-14
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY*DLVHTAKKGRME 43
TY IASH+ AGKMVMNCDWSKPSTSDLLRPAQN HTY DL+H ++ + E
Sbjct: 304 TYFIASHKCSAGKMVMNCDWSKPSTSDLLRPAQNGHTYSDLIHITQRRKAE 354
>ref|YP_008999589.1| ribosomal protein L2 (mitochondrion) [Vaccinium macrocarpon]
gi|549531664|gb|AGX28803.1| ribosomal protein L2
(mitochondrion) [Vaccinium macrocarpon]
Length = 335
Score = 82.4 bits (202), Expect = 1e-13
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 82
TYIIASH+LEAGKMVMNCDWSKPSTSDLLRPAQNAHTY
Sbjct: 298 TYIIASHELEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 335
>pir||S46947 ribosomal protein L2 - evening primrose mitochondrion
(mitochondrion) [Oenothera villaricae]
gi|516394|emb|CAA56451.1| 70s mitochondrial ribosomal
protein L2 [Oenothera berteroana]
Length = 332
Score = 82.0 bits (201), Expect = 2e-13
Identities = 37/38 (97%), Positives = 37/38 (97%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 82
TYIIASHQLEAGKMVMNCDWSKPSTSD LRPAQNAHTY
Sbjct: 295 TYIIASHQLEAGKMVMNCDWSKPSTSDFLRPAQNAHTY 332
>ref|YP_002608368.1| ribosomal protein L2 [Vitis vinifera] gi|209954165|emb|CAQ77612.1|
ribosomal protein L2 [Vitis vinifera]
gi|239764759|gb|ACS15228.1| ribosomal protein L2 [Vitis
vinifera]
Length = 334
Score = 82.0 bits (201), Expect = 2e-13
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 82
TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPA+NAHTY
Sbjct: 297 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPARNAHTY 334
>gb|ALF04062.1| ribosomal protein L2 (mitochondrion) [Cannabis sativa]
Length = 337
Score = 81.6 bits (200), Expect = 2e-13
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHTY 82
TYIIASHQLEAGKMVMNC+WSKPSTSDLLRPAQNAHTY
Sbjct: 300 TYIIASHQLEAGKMVMNCNWSKPSTSDLLRPAQNAHTY 337
>ref|YP_173485.1| ribosomal protein L2 [Nicotiana tabacum]
gi|756762100|gb|AJM70209.1| ribosomal protein L2
(mitochondrion) [Nicotiana tabacum/Hyoscyamus niger
cybrid]
Length = 331
Score = 80.9 bits (198), Expect = 3e-13
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 294 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 330
>ref|YP_009121961.1| ribosomal protein L2 (mitochondrion) [Hyoscyamus niger]
gi|756142178|gb|AJK91389.1| ribosomal protein L2
(mitochondrion) [Hyoscyamus niger]
Length = 331
Score = 80.9 bits (198), Expect = 3e-13
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 294 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 330
>ref|XP_010314947.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L2,
mitochondrial, partial [Solanum lycopersicum]
Length = 323
Score = 80.9 bits (198), Expect = 3e-13
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 286 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 322
>ref|YP_009049780.1| ribosomal protein L2 (mitochondrion) [Capsicum annuum]
gi|667752052|gb|AIG90138.1| ribosomal protein L2
(mitochondrion) [Capsicum annuum]
Length = 332
Score = 80.9 bits (198), Expect = 3e-13
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 295 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 331
>gb|AIG89877.1| ribosomal protein L2 (mitochondrion) [Capsicum annuum]
Length = 329
Score = 80.9 bits (198), Expect = 3e-13
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 292 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 328
>dbj|BAD83551.2| ribosomal protein L2 (mitochondrion) [Nicotiana tabacum]
Length = 331
Score = 80.9 bits (198), Expect = 3e-13
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 195 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 85
TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT
Sbjct: 294 TYIIASHQLEAGKMVMNCDWSKPSTSDLLRPAQNAHT 330