BLASTX nr result
ID: Cornus23_contig00042683
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00042683
(274 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prf||1211235P rpoC-like ORF 236 146 5e-33
pir||A05030 rpoC protein homolog - common tobacco chloroplast 146 5e-33
emb|CAN83637.1| hypothetical protein VITISV_032940 [Vitis vinifera] 140 3e-31
emb|CBI36146.3| unnamed protein product [Vitis vinifera] 134 3e-29
ref|XP_002519783.1| DNA-directed RNA polymerase beta chain, puta... 127 4e-27
gb|AEP25210.1| RNA polymerase C2, partial (chloroplast) [Basella... 109 9e-22
gb|ABV65725.1| RNA polymerase beta'' subunit (chloroplast) [Corn... 109 9e-22
gb|AKJ77713.1| RNA polymerase beta'' subunit (chloroplast) [Peri... 107 3e-21
ref|YP_009160792.1| RNA polymerase beta' subunit (chloroplast) [... 107 3e-21
sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymeras... 107 3e-21
gb|KMS65194.1| hypothetical protein BVRB_038460, partial [Beta v... 107 3e-21
ref|YP_009143797.1| RNA polymerase beta subunit (chloroplast) [S... 107 3e-21
ref|YP_009143629.1| RNA polymerase beta subunit (chloroplast) [S... 107 3e-21
gb|AHW52174.1| RNA polymerase beta' subunit (chloroplast) [Rhazy... 107 3e-21
gb|AIW05934.1| RNA polymerase beta chain [Wrightia natalensis] 107 3e-21
gb|AIW05764.1| RNA polymerase beta chain [Periploca sepium] 107 3e-21
gb|AIW05425.1| RNA polymerase beta chain [Neobracea bahamensis] 107 3e-21
gb|AIW05341.1| RNA polymerase beta chain [Epigynum auritum] 107 3e-21
gb|AHY80531.1| RNA polymerase beta' subunit [Beta vulgaris subsp... 107 3e-21
gb|AEP25223.1| RNA polymerase C2, partial (chloroplast) [Phytola... 107 3e-21
>prf||1211235P rpoC-like ORF 236
Length = 236
Score = 146 bits (369), Expect = 5e-33
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -2
Query: 234 ESRSRKGSFPITDSNPLSNSTQRNMEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGM 55
ESRS KGSF ITDSNPLSNSTQRNMEVLMAERANLV+HNKAI+GTAMKRLISRLIDHFGM
Sbjct: 24 ESRSIKGSFTITDSNPLSNSTQRNMEVLMAERANLVFHNKAINGTAMKRLISRLIDHFGM 83
Query: 54 AYTSHILDQVKTLGFQQA 1
AYTSHILDQVKTLGFQQA
Sbjct: 84 AYTSHILDQVKTLGFQQA 101
>pir||A05030 rpoC protein homolog - common tobacco chloroplast
Length = 236
Score = 146 bits (369), Expect = 5e-33
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -2
Query: 234 ESRSRKGSFPITDSNPLSNSTQRNMEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGM 55
ESRS KGSF ITDSNPLSNSTQRNMEVLMAERANLV+HNKAI+GTAMKRLISRLIDHFGM
Sbjct: 24 ESRSIKGSFTITDSNPLSNSTQRNMEVLMAERANLVFHNKAINGTAMKRLISRLIDHFGM 83
Query: 54 AYTSHILDQVKTLGFQQA 1
AYTSHILDQVKTLGFQQA
Sbjct: 84 AYTSHILDQVKTLGFQQA 101
>emb|CAN83637.1| hypothetical protein VITISV_032940 [Vitis vinifera]
Length = 203
Score = 140 bits (354), Expect = 3e-31
Identities = 70/78 (89%), Positives = 72/78 (92%)
Frame = -2
Query: 234 ESRSRKGSFPITDSNPLSNSTQRNMEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGM 55
E+RSRKGSF TDSNPLSN TQRNM VLM ERANLV+HNK IDGTAMKRLISRLIDHFGM
Sbjct: 83 EARSRKGSFTTTDSNPLSNPTQRNMGVLMTERANLVFHNKVIDGTAMKRLISRLIDHFGM 142
Query: 54 AYTSHILDQVKTLGFQQA 1
AYTSHILDQVKTLGFQQA
Sbjct: 143 AYTSHILDQVKTLGFQQA 160
>emb|CBI36146.3| unnamed protein product [Vitis vinifera]
Length = 510
Score = 134 bits (337), Expect = 3e-29
Identities = 66/77 (85%), Positives = 70/77 (90%)
Frame = -2
Query: 231 SRSRKGSFPITDSNPLSNSTQRNMEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMA 52
+RSRKGSF TDSNPLSN TQ+NM VLM ER NLV+HNK IDGTAMKRLISRLIDHFGMA
Sbjct: 157 ARSRKGSFTTTDSNPLSNLTQQNMGVLMTERVNLVFHNKVIDGTAMKRLISRLIDHFGMA 216
Query: 51 YTSHILDQVKTLGFQQA 1
YTSHILDQVKTLGFQQ+
Sbjct: 217 YTSHILDQVKTLGFQQS 233
>ref|XP_002519783.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
gi|223541022|gb|EEF42579.1| DNA-directed RNA polymerase
beta chain, putative [Ricinus communis]
Length = 349
Score = 127 bits (318), Expect = 4e-27
Identities = 63/73 (86%), Positives = 68/73 (93%)
Frame = -2
Query: 219 KGSFPITDSNPLSNSTQRNMEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSH 40
K FPI DSNPLSNST+RNMEVLMA+RANLV+HNK ID TA+KRLISRLID+FGMAYTSH
Sbjct: 177 KRKFPIIDSNPLSNSTRRNMEVLMAKRANLVFHNKVIDRTAIKRLISRLIDNFGMAYTSH 236
Query: 39 ILDQVKTLGFQQA 1
ILDQVKTLGFQQA
Sbjct: 237 ILDQVKTLGFQQA 249
>gb|AEP25210.1| RNA polymerase C2, partial (chloroplast) [Basella alba]
Length = 1136
Score = 109 bits (272), Expect = 9e-22
Identities = 54/54 (100%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>gb|ABV65725.1| RNA polymerase beta'' subunit (chloroplast) [Cornus florida]
Length = 1391
Score = 109 bits (272), Expect = 9e-22
Identities = 54/54 (100%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>gb|AKJ77713.1| RNA polymerase beta'' subunit (chloroplast) [Perilla frutescens]
Length = 1398
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>ref|YP_009160792.1| RNA polymerase beta' subunit (chloroplast) [Haloxylon ammodendron]
gi|555298244|gb|AGZ13341.1| RNA polymerase beta' subunit
(chloroplast) [Haloxylon ammodendron]
Length = 1371
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
(chloroplast) [Nicotiana tomentosiformis]
gi|80750911|dbj|BAE47987.1| RNA polymerase beta''
subunit [Nicotiana tomentosiformis]
Length = 1392
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>gb|KMS65194.1| hypothetical protein BVRB_038460, partial [Beta vulgaris subsp.
vulgaris]
Length = 107
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>ref|YP_009143797.1| RNA polymerase beta subunit (chloroplast) [Salicornia bigelovii]
gi|648933243|gb|AIC37182.1| RNA polymerase beta subunit
(chloroplast) [Salicornia bigelovii]
Length = 1373
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>ref|YP_009143629.1| RNA polymerase beta subunit (chloroplast) [Salicornia brachiata]
gi|836613919|ref|YP_009143713.1| RNA polymerase beta
subunit (chloroplast) [Salicornia europaea]
gi|648933073|gb|AIC37014.1| RNA polymerase beta subunit
(chloroplast) [Salicornia brachiata]
gi|648933158|gb|AIC37098.1| RNA polymerase beta subunit
(chloroplast) [Salicornia europaea]
Length = 1375
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>gb|AHW52174.1| RNA polymerase beta' subunit (chloroplast) [Rhazya stricta]
Length = 1390
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>gb|AIW05934.1| RNA polymerase beta chain [Wrightia natalensis]
Length = 1393
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>gb|AIW05764.1| RNA polymerase beta chain [Periploca sepium]
Length = 1362
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>gb|AIW05425.1| RNA polymerase beta chain [Neobracea bahamensis]
Length = 1385
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>gb|AIW05341.1| RNA polymerase beta chain [Epigynum auritum]
Length = 1382
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>gb|AHY80531.1| RNA polymerase beta' subunit [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54
>gb|AEP25223.1| RNA polymerase C2, partial (chloroplast) [Phytolacca americana]
Length = 1123
Score = 107 bits (268), Expect = 3e-21
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 162 MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 1
MEVLMAERANLV+HNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQA 54