BLASTX nr result
ID: Cornus23_contig00041561
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00041561
(240 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010258361.1| PREDICTED: TATA box-binding protein-associat... 65 2e-08
ref|XP_010258357.1| PREDICTED: TATA box-binding protein-associat... 65 2e-08
ref|XP_002269865.1| PREDICTED: TATA box-binding protein-associat... 65 2e-08
emb|CAN73288.1| hypothetical protein VITISV_027088 [Vitis vinifera] 64 3e-08
ref|XP_010086553.1| hypothetical protein L484_001445 [Morus nota... 62 2e-07
ref|XP_012448213.1| PREDICTED: TATA box-binding protein-associat... 59 1e-06
gb|KJB60766.1| hypothetical protein B456_009G324500 [Gossypium r... 59 1e-06
ref|XP_012448211.1| PREDICTED: TATA box-binding protein-associat... 59 1e-06
gb|KHG20512.1| RNA polymerase I-specific transcription initiatio... 59 1e-06
ref|XP_007046104.1| Maternal effect embryo arrest 12, putative [... 59 1e-06
ref|XP_011459268.1| PREDICTED: TATA box-binding protein-associat... 57 5e-06
ref|XP_011459262.1| PREDICTED: TATA box-binding protein-associat... 57 5e-06
>ref|XP_010258361.1| PREDICTED: TATA box-binding protein-associated factor RNA
polymerase I subunit B isoform X2 [Nelumbo nucifera]
Length = 738
Score = 65.5 bits (158), Expect = 2e-08
Identities = 28/47 (59%), Positives = 33/47 (70%)
Frame = -1
Query: 141 CYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMDGGDGRG 1
C+ACGN +YC RCGSQAEDI++T VADEDF+D GD RG
Sbjct: 7 CHACGNVGLDSCNDGFYYCLRCGSQAEDIVETGVADEDFLDKGDARG 53
>ref|XP_010258357.1| PREDICTED: TATA box-binding protein-associated factor RNA
polymerase I subunit B isoform X1 [Nelumbo nucifera]
gi|720007612|ref|XP_010258358.1| PREDICTED: TATA
box-binding protein-associated factor RNA polymerase I
subunit B isoform X1 [Nelumbo nucifera]
gi|720007615|ref|XP_010258359.1| PREDICTED: TATA
box-binding protein-associated factor RNA polymerase I
subunit B isoform X1 [Nelumbo nucifera]
gi|720007618|ref|XP_010258360.1| PREDICTED: TATA
box-binding protein-associated factor RNA polymerase I
subunit B isoform X1 [Nelumbo nucifera]
Length = 739
Score = 65.5 bits (158), Expect = 2e-08
Identities = 28/47 (59%), Positives = 33/47 (70%)
Frame = -1
Query: 141 CYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMDGGDGRG 1
C+ACGN +YC RCGSQAEDI++T VADEDF+D GD RG
Sbjct: 7 CHACGNVGLDSCNDGFYYCLRCGSQAEDIVETGVADEDFLDKGDARG 53
>ref|XP_002269865.1| PREDICTED: TATA box-binding protein-associated factor RNA
polymerase I subunit B [Vitis vinifera]
Length = 722
Score = 65.1 bits (157), Expect = 2e-08
Identities = 31/55 (56%), Positives = 35/55 (63%)
Frame = -1
Query: 165 MANRLDWACYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMDGGDGRG 1
M RLD C+ CG+ FYC RCGSQAEDIIDT VA+EDF+ GD RG
Sbjct: 1 MPERLDLTCHVCGSVGFSDGADGFFYCGRCGSQAEDIIDTGVAEEDFVAKGDARG 55
>emb|CAN73288.1| hypothetical protein VITISV_027088 [Vitis vinifera]
Length = 722
Score = 64.3 bits (155), Expect = 3e-08
Identities = 30/55 (54%), Positives = 35/55 (63%)
Frame = -1
Query: 165 MANRLDWACYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMDGGDGRG 1
M RL+ C+ CG+ FYC RCGSQAEDIIDT VA+EDF+ GD RG
Sbjct: 1 MPERLBLTCHVCGSVGFSDGADGFFYCGRCGSQAEDIIDTGVAEEDFVAKGDARG 55
>ref|XP_010086553.1| hypothetical protein L484_001445 [Morus notabilis]
gi|587829328|gb|EXB20252.1| hypothetical protein
L484_001445 [Morus notabilis]
Length = 761
Score = 61.6 bits (148), Expect = 2e-07
Identities = 27/49 (55%), Positives = 30/49 (61%)
Frame = -1
Query: 147 WACYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMDGGDGRG 1
W C+ CGN +YC RCGSQAEDII+T VADEDF D G G
Sbjct: 7 WTCHTCGNAGFADGFDGFYYCLRCGSQAEDIIETGVADEDFADKGGTAG 55
>ref|XP_012448213.1| PREDICTED: TATA box-binding protein-associated factor RNA
polymerase I subunit B isoform X2 [Gossypium raimondii]
Length = 702
Score = 59.3 bits (142), Expect = 1e-06
Identities = 27/49 (55%), Positives = 30/49 (61%)
Frame = -1
Query: 147 WACYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMDGGDGRG 1
W C CGN FYC RCGSQA+DIIDT VADEDF++ G G
Sbjct: 8 WTCNLCGNVGMADGSDGYFYCLRCGSQADDIIDTGVADEDFIEKGSQGG 56
>gb|KJB60766.1| hypothetical protein B456_009G324500 [Gossypium raimondii]
Length = 533
Score = 59.3 bits (142), Expect = 1e-06
Identities = 27/49 (55%), Positives = 30/49 (61%)
Frame = -1
Query: 147 WACYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMDGGDGRG 1
W C CGN FYC RCGSQA+DIIDT VADEDF++ G G
Sbjct: 8 WTCNLCGNVGMADGSDGYFYCLRCGSQADDIIDTGVADEDFIEKGSQGG 56
>ref|XP_012448211.1| PREDICTED: TATA box-binding protein-associated factor RNA
polymerase I subunit B isoform X1 [Gossypium raimondii]
gi|823230992|ref|XP_012448212.1| PREDICTED: TATA
box-binding protein-associated factor RNA polymerase I
subunit B isoform X1 [Gossypium raimondii]
gi|763793769|gb|KJB60765.1| hypothetical protein
B456_009G324500 [Gossypium raimondii]
gi|763793771|gb|KJB60767.1| hypothetical protein
B456_009G324500 [Gossypium raimondii]
Length = 729
Score = 59.3 bits (142), Expect = 1e-06
Identities = 27/49 (55%), Positives = 30/49 (61%)
Frame = -1
Query: 147 WACYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMDGGDGRG 1
W C CGN FYC RCGSQA+DIIDT VADEDF++ G G
Sbjct: 8 WTCNLCGNVGMADGSDGYFYCLRCGSQADDIIDTGVADEDFIEKGSQGG 56
>gb|KHG20512.1| RNA polymerase I-specific transcription initiation factor rrn7
[Gossypium arboreum]
Length = 702
Score = 58.9 bits (141), Expect = 1e-06
Identities = 27/49 (55%), Positives = 30/49 (61%)
Frame = -1
Query: 147 WACYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMDGGDGRG 1
W C CGN FYC RCGSQA+DIIDT VADEDF++ G G
Sbjct: 8 WTCNLCGNVGMADGSDGYFYCLRCGSQADDIIDTGVADEDFIEKGTQGG 56
>ref|XP_007046104.1| Maternal effect embryo arrest 12, putative [Theobroma cacao]
gi|508710039|gb|EOY01936.1| Maternal effect embryo
arrest 12, putative [Theobroma cacao]
Length = 734
Score = 58.9 bits (141), Expect = 1e-06
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = -1
Query: 147 WACYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMDGGDGRG 1
W C CGN +YC RCGSQA+D+IDT VADEDF++ G G
Sbjct: 8 WTCNTCGNVGMADGSDGYYYCFRCGSQADDVIDTGVADEDFIEKGSQGG 56
>ref|XP_011459268.1| PREDICTED: TATA box-binding protein-associated factor RNA
polymerase I subunit B isoform X2 [Fragaria vesca subsp.
vesca]
Length = 709
Score = 57.0 bits (136), Expect = 5e-06
Identities = 26/49 (53%), Positives = 29/49 (59%)
Frame = -1
Query: 165 MANRLDWACYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMD 19
M N W C CGN FYCT+C SQAED +DT VADEDF+D
Sbjct: 1 MGNPDTWRCQNCGNVGLEDGDDGFFYCTQCNSQAEDFMDTGVADEDFLD 49
>ref|XP_011459262.1| PREDICTED: TATA box-binding protein-associated factor RNA
polymerase I subunit B isoform X1 [Fragaria vesca subsp.
vesca] gi|764542837|ref|XP_011459263.1| PREDICTED: TATA
box-binding protein-associated factor RNA polymerase I
subunit B isoform X1 [Fragaria vesca subsp. vesca]
gi|764542840|ref|XP_011459264.1| PREDICTED: TATA
box-binding protein-associated factor RNA polymerase I
subunit B isoform X1 [Fragaria vesca subsp. vesca]
gi|764542848|ref|XP_011459265.1| PREDICTED: TATA
box-binding protein-associated factor RNA polymerase I
subunit B isoform X1 [Fragaria vesca subsp. vesca]
gi|764542853|ref|XP_011459266.1| PREDICTED: TATA
box-binding protein-associated factor RNA polymerase I
subunit B isoform X1 [Fragaria vesca subsp. vesca]
gi|764542858|ref|XP_011459267.1| PREDICTED: TATA
box-binding protein-associated factor RNA polymerase I
subunit B isoform X1 [Fragaria vesca subsp. vesca]
Length = 743
Score = 57.0 bits (136), Expect = 5e-06
Identities = 26/49 (53%), Positives = 29/49 (59%)
Frame = -1
Query: 165 MANRLDWACYACGNXXXXXXXXXXFYCTRCGSQAEDIIDTAVADEDFMD 19
M N W C CGN FYCT+C SQAED +DT VADEDF+D
Sbjct: 1 MGNPDTWRCQNCGNVGLEDGDDGFFYCTQCNSQAEDFMDTGVADEDFLD 49