BLASTX nr result

ID: Cornus23_contig00039822 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00039822
         (400 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [The...   122   8e-26
ref|XP_008230318.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   114   3e-23
ref|XP_008230317.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   114   3e-23
ref|XP_009373754.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   114   4e-23
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...   113   6e-23
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   111   2e-22
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   111   2e-22
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   111   2e-22
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   110   4e-22
ref|XP_009619460.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   110   4e-22
emb|CDP02357.1| unnamed protein product [Coffea canephora]            110   4e-22
ref|NP_001289520.1| DNA-directed RNA polymerase 2, chloroplastic...   110   4e-22
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   110   4e-22
gb|KDO72326.1| hypothetical protein CISIN_1g036741mg [Citrus sin...   109   7e-22
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   109   7e-22
ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   109   9e-22
ref|XP_002533596.1| conserved hypothetical protein [Ricinus comm...   108   1e-21
ref|XP_008379468.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   107   3e-21
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   107   5e-21
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   107   5e-21

>ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508711950|gb|EOY03847.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 1100

 Score =  122 bits (307), Expect = 8e-26
 Identities = 66/132 (50%), Positives = 77/132 (58%)
 Frame = -1

Query: 397 EFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXXX 218
           E++G+ SFG  R ++  SGLCP+                            LL+ M    
Sbjct: 112 EYIGKQSFGSPRNEIGCSGLCPRGYVSVAEAVSSTDVEEDVSVVEEIKE--LLDEMKKEQ 169

Query: 217 XXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPN 38
                      +II RGMG  KY+ L+RRQVKIETEAWEQAAKEYRELL+DMCE KLAPN
Sbjct: 170 RRETGNRRRRCQIIERGMGESKYRFLRRRQVKIETEAWEQAAKEYRELLMDMCEHKLAPN 229

Query: 37  LPYIKSLFLGWF 2
           LPYIKSLFLGWF
Sbjct: 230 LPYIKSLFLGWF 241


>ref|XP_008230318.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial isoform X2 [Prunus mume]
          Length = 862

 Score =  114 bits (285), Expect = 3e-23
 Identities = 62/133 (46%), Positives = 75/133 (56%)
 Frame = -1

Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
           ++ M +PSF  VR  +  +G CPK                            LL+ M   
Sbjct: 105 EDCMCKPSFWSVRNPIGFNGFCPKGYASVAEAVSSTDVEEDVSVVDEVQE--LLQQMSIE 162

Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
                       +  ARGMG  KY +LKRRQ+KIETEAWE+AAKEYREL++DMCEQKLAP
Sbjct: 163 EKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAP 222

Query: 40  NLPYIKSLFLGWF 2
           NLPY+KSLFLGWF
Sbjct: 223 NLPYMKSLFLGWF 235


>ref|XP_008230317.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial isoform X1 [Prunus mume]
          Length = 1024

 Score =  114 bits (285), Expect = 3e-23
 Identities = 62/133 (46%), Positives = 75/133 (56%)
 Frame = -1

Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
           ++ M +PSF  VR  +  +G CPK                            LL+ M   
Sbjct: 105 EDCMCKPSFWSVRNPIGFNGFCPKGYASVAEAVSSTDVEEDVSVVDEVQE--LLQQMSIE 162

Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
                       +  ARGMG  KY +LKRRQ+KIETEAWE+AAKEYREL++DMCEQKLAP
Sbjct: 163 EKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAP 222

Query: 40  NLPYIKSLFLGWF 2
           NLPY+KSLFLGWF
Sbjct: 223 NLPYMKSLFLGWF 235


>ref|XP_009373754.1| PREDICTED: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial-like [Pyrus x
           bretschneideri]
          Length = 1024

 Score =  114 bits (284), Expect = 4e-23
 Identities = 61/133 (45%), Positives = 72/133 (54%)
 Frame = -1

Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
           + +MG PS G VR  +  +G CPK                            LL+ M   
Sbjct: 104 ESYMGNPSLGSVRNPIGFNGFCPKGYASIAEAVSSTDAEEDVSVVDEVQE--LLQQMSKE 161

Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
                       +   RGMG  KY  LKRRQ+KIETEAWE+AAKEYREL++DMCE KLAP
Sbjct: 162 GKRQTDHWRRMRQRRVRGMGQAKYLALKRRQIKIETEAWERAAKEYRELMMDMCEHKLAP 221

Query: 40  NLPYIKSLFLGWF 2
           NLPY+KSLFLGWF
Sbjct: 222 NLPYMKSLFLGWF 234


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
           gi|462411068|gb|EMJ16117.1| hypothetical protein
           PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  113 bits (282), Expect = 6e-23
 Identities = 62/133 (46%), Positives = 75/133 (56%)
 Frame = -1

Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
           ++ M +PSF  VR  +  +G CPK                            LL+ M   
Sbjct: 105 EDCMCKPSFWSVRNPIWFNGFCPKGYASVAEAVSSTDVEEEVSVVDEVQE--LLQQMSIE 162

Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
                       +  ARGMG  KY +LKRRQ+KIETEAWE+AAKEYREL++DMCEQKLAP
Sbjct: 163 EKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAP 222

Query: 40  NLPYIKSLFLGWF 2
           NLPY+KSLFLGWF
Sbjct: 223 NLPYMKSLFLGWF 235


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533046|gb|ESR44229.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  111 bits (277), Expect = 2e-22
 Identities = 51/59 (86%), Positives = 56/59 (94%)
 Frame = -1

Query: 178 IARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
           +ARGMGS KY++LK RQVKIETEAWEQAA EYRELL+DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 180 VARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533045|gb|ESR44228.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  111 bits (277), Expect = 2e-22
 Identities = 51/59 (86%), Positives = 56/59 (94%)
 Frame = -1

Query: 178 IARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
           +ARGMGS KY++LK RQVKIETEAWEQAA EYRELL+DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 180 VARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533044|gb|ESR44227.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  111 bits (277), Expect = 2e-22
 Identities = 51/59 (86%), Positives = 56/59 (94%)
 Frame = -1

Query: 178 IARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
           +ARGMGS KY++LK RQVKIETEAWEQAA EYRELL+DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 180 VARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  110 bits (275), Expect = 4e-22
 Identities = 49/60 (81%), Positives = 55/60 (91%)
 Frame = -1

Query: 181 IIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
           ++  GMG +KYQ LKRRQVK+ETEAWEQAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 172 MLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWF 231


>ref|XP_009619460.1| PREDICTED: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial [Nicotiana tomentosiformis]
          Length = 1021

 Score =  110 bits (275), Expect = 4e-22
 Identities = 49/60 (81%), Positives = 55/60 (91%)
 Frame = -1

Query: 181 IIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
           ++  GMG +KYQ LKRRQVK+ETEAWEQAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 173 MLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWF 232


>emb|CDP02357.1| unnamed protein product [Coffea canephora]
          Length = 1040

 Score =  110 bits (275), Expect = 4e-22
 Identities = 64/135 (47%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
 Frame = -1

Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXE--LLEGMG 227
           DEF+ RPS    R Q+S++GL  K                              LL  M 
Sbjct: 115 DEFLARPSLNFARNQISINGLSQKSYASLAEAIAVSSTDVEEDTSVVAADEVHELLSEMK 174

Query: 226 XXXXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKL 47
                              GMGSKKY  LKRRQVKIETEAWEQAA EY+ELL DMCE KL
Sbjct: 175 KEDRRQMSFRWRKHHRAVYGMGSKKYHALKRRQVKIETEAWEQAANEYKELLNDMCEHKL 234

Query: 46  APNLPYIKSLFLGWF 2
           APNLPY+KSLFLGWF
Sbjct: 235 APNLPYMKSLFLGWF 249


>ref|NP_001289520.1| DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
           [Nicotiana sylvestris]
           gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY RecName:
           Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor [Nicotiana sylvestris]
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  110 bits (275), Expect = 4e-22
 Identities = 49/60 (81%), Positives = 55/60 (91%)
 Frame = -1

Query: 181 IIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
           ++  GMG +KYQ LKRRQVK+ETEAWEQAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 172 MLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWF 231


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           [Nicotiana tabacum] gi|21425665|emb|CAC95020.1|
           mitochondrial and chloroplast RNA polymerase [Nicotiana
           tabacum]
          Length = 1021

 Score =  110 bits (275), Expect = 4e-22
 Identities = 49/60 (81%), Positives = 55/60 (91%)
 Frame = -1

Query: 181 IIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
           ++  GMG +KYQ LKRRQVK+ETEAWEQAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 173 MLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWF 232


>gb|KDO72326.1| hypothetical protein CISIN_1g036741mg [Citrus sinensis]
          Length = 1030

 Score =  109 bits (273), Expect = 7e-22
 Identities = 50/59 (84%), Positives = 56/59 (94%)
 Frame = -1

Query: 178 IARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
           +ARGMGS KY++LK RQVKIETEAWE+AA EYRELL+DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 180 VARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  109 bits (273), Expect = 7e-22
 Identities = 50/59 (84%), Positives = 56/59 (94%)
 Frame = -1

Query: 178 IARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
           +ARGMGS KY++LK RQVKIETEAWE+AA EYRELL+DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 176 VARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 234


>ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial-like [Nelumbo nucifera]
          Length = 1031

 Score =  109 bits (272), Expect = 9e-22
 Identities = 55/81 (67%), Positives = 59/81 (72%)
 Frame = -1

Query: 244 LLEGMGXXXXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLID 65
           LLE MG                +  GMG  KY LL+RRQVKIETEAWEQAAKEYRELL+D
Sbjct: 161 LLEEMGKEEKKELELRDQKQIKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYRELLMD 220

Query: 64  MCEQKLAPNLPYIKSLFLGWF 2
           MCEQKLAPNLPY+KSLFLGWF
Sbjct: 221 MCEQKLAPNLPYMKSLFLGWF 241


>ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
           gi|223526525|gb|EEF28787.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 395

 Score =  108 bits (271), Expect = 1e-21
 Identities = 49/57 (85%), Positives = 55/57 (96%)
 Frame = -1

Query: 172 RGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
           RGMGSKKYQ+LK+RQVKIETEAWE A KEY+ELL+DMCE+KLAPNLPY+KSLFLGWF
Sbjct: 150 RGMGSKKYQMLKKRQVKIETEAWEWAVKEYKELLMDMCEKKLAPNLPYMKSLFLGWF 206


>ref|XP_008379468.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Malus domestica]
          Length = 1025

 Score =  107 bits (267), Expect = 3e-21
 Identities = 58/133 (43%), Positives = 70/133 (52%)
 Frame = -1

Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
           + ++G PS+  VR  +  +G C K                            LL+ M   
Sbjct: 105 ESYLGNPSYWSVRTPIGFNGFCAKGYASVAEVVSSTDAEEDVSLVDEVQE--LLQQMSKE 162

Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
                           RGMG  KY  LKRRQ+KIETEAWE+AAKEYREL++DMCE KLAP
Sbjct: 163 GKRQTDHWRRMRLRRVRGMGQAKYLALKRRQIKIETEAWERAAKEYRELMMDMCEHKLAP 222

Query: 40  NLPYIKSLFLGWF 2
           NLPY+KSLFLGWF
Sbjct: 223 NLPYMKSLFLGWF 235


>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 1019

 Score =  107 bits (266), Expect = 5e-21
 Identities = 60/133 (45%), Positives = 72/133 (54%)
 Frame = -1

Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
           DEF+ RP    ++ QVS + +C K                           ELL  +   
Sbjct: 98  DEFLRRPLLCAMKSQVSNNDICRKSYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKE 157

Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
                       R++  G+  +KY  LKRRQVKIET+AWE AAKEYRELL DMCEQKLAP
Sbjct: 158 EKKQFTFRRRNQRLLTSGIDRRKYPALKRRQVKIETQAWELAAKEYRELLFDMCEQKLAP 217

Query: 40  NLPYIKSLFLGWF 2
           NLPY+KSLFLGWF
Sbjct: 218 NLPYVKSLFLGWF 230


>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial [Solanum lycopersicum]
          Length = 1022

 Score =  107 bits (266), Expect = 5e-21
 Identities = 60/133 (45%), Positives = 72/133 (54%)
 Frame = -1

Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
           DEF+ RP    ++ QVS + +C K                           ELL  +   
Sbjct: 101 DEFLRRPLLCAMKSQVSNNDICRKNYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKE 160

Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
                       R++  G+  +KY  L RRQVKIET+AWEQAAKEYRELL DMCEQKLAP
Sbjct: 161 EKKQFTFRRRKQRMLTSGIDRRKYPALMRRQVKIETQAWEQAAKEYRELLFDMCEQKLAP 220

Query: 40  NLPYIKSLFLGWF 2
           NLPY+KSLFLGWF
Sbjct: 221 NLPYVKSLFLGWF 233


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