BLASTX nr result
ID: Cornus23_contig00039822
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00039822
(400 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [The... 122 8e-26
ref|XP_008230318.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 114 3e-23
ref|XP_008230317.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 114 3e-23
ref|XP_009373754.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 114 4e-23
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun... 113 6e-23
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr... 111 2e-22
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr... 111 2e-22
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr... 111 2e-22
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 110 4e-22
ref|XP_009619460.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 110 4e-22
emb|CDP02357.1| unnamed protein product [Coffea canephora] 110 4e-22
ref|NP_001289520.1| DNA-directed RNA polymerase 2, chloroplastic... 110 4e-22
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 110 4e-22
gb|KDO72326.1| hypothetical protein CISIN_1g036741mg [Citrus sin... 109 7e-22
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 109 7e-22
ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 109 9e-22
ref|XP_002533596.1| conserved hypothetical protein [Ricinus comm... 108 1e-21
ref|XP_008379468.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 107 3e-21
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 107 5e-21
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 107 5e-21
>ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508711950|gb|EOY03847.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1100
Score = 122 bits (307), Expect = 8e-26
Identities = 66/132 (50%), Positives = 77/132 (58%)
Frame = -1
Query: 397 EFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXXX 218
E++G+ SFG R ++ SGLCP+ LL+ M
Sbjct: 112 EYIGKQSFGSPRNEIGCSGLCPRGYVSVAEAVSSTDVEEDVSVVEEIKE--LLDEMKKEQ 169
Query: 217 XXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPN 38
+II RGMG KY+ L+RRQVKIETEAWEQAAKEYRELL+DMCE KLAPN
Sbjct: 170 RRETGNRRRRCQIIERGMGESKYRFLRRRQVKIETEAWEQAAKEYRELLMDMCEHKLAPN 229
Query: 37 LPYIKSLFLGWF 2
LPYIKSLFLGWF
Sbjct: 230 LPYIKSLFLGWF 241
>ref|XP_008230318.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial isoform X2 [Prunus mume]
Length = 862
Score = 114 bits (285), Expect = 3e-23
Identities = 62/133 (46%), Positives = 75/133 (56%)
Frame = -1
Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
++ M +PSF VR + +G CPK LL+ M
Sbjct: 105 EDCMCKPSFWSVRNPIGFNGFCPKGYASVAEAVSSTDVEEDVSVVDEVQE--LLQQMSIE 162
Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
+ ARGMG KY +LKRRQ+KIETEAWE+AAKEYREL++DMCEQKLAP
Sbjct: 163 EKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAP 222
Query: 40 NLPYIKSLFLGWF 2
NLPY+KSLFLGWF
Sbjct: 223 NLPYMKSLFLGWF 235
>ref|XP_008230317.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial isoform X1 [Prunus mume]
Length = 1024
Score = 114 bits (285), Expect = 3e-23
Identities = 62/133 (46%), Positives = 75/133 (56%)
Frame = -1
Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
++ M +PSF VR + +G CPK LL+ M
Sbjct: 105 EDCMCKPSFWSVRNPIGFNGFCPKGYASVAEAVSSTDVEEDVSVVDEVQE--LLQQMSIE 162
Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
+ ARGMG KY +LKRRQ+KIETEAWE+AAKEYREL++DMCEQKLAP
Sbjct: 163 EKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAP 222
Query: 40 NLPYIKSLFLGWF 2
NLPY+KSLFLGWF
Sbjct: 223 NLPYMKSLFLGWF 235
>ref|XP_009373754.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Pyrus x
bretschneideri]
Length = 1024
Score = 114 bits (284), Expect = 4e-23
Identities = 61/133 (45%), Positives = 72/133 (54%)
Frame = -1
Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
+ +MG PS G VR + +G CPK LL+ M
Sbjct: 104 ESYMGNPSLGSVRNPIGFNGFCPKGYASIAEAVSSTDAEEDVSVVDEVQE--LLQQMSKE 161
Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
+ RGMG KY LKRRQ+KIETEAWE+AAKEYREL++DMCE KLAP
Sbjct: 162 GKRQTDHWRRMRQRRVRGMGQAKYLALKRRQIKIETEAWERAAKEYRELMMDMCEHKLAP 221
Query: 40 NLPYIKSLFLGWF 2
NLPY+KSLFLGWF
Sbjct: 222 NLPYMKSLFLGWF 234
>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
gi|462411068|gb|EMJ16117.1| hypothetical protein
PRUPE_ppa000719mg [Prunus persica]
Length = 1024
Score = 113 bits (282), Expect = 6e-23
Identities = 62/133 (46%), Positives = 75/133 (56%)
Frame = -1
Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
++ M +PSF VR + +G CPK LL+ M
Sbjct: 105 EDCMCKPSFWSVRNPIWFNGFCPKGYASVAEAVSSTDVEEEVSVVDEVQE--LLQQMSIE 162
Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
+ ARGMG KY +LKRRQ+KIETEAWE+AAKEYREL++DMCEQKLAP
Sbjct: 163 EKREAQYKQRTRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAP 222
Query: 40 NLPYIKSLFLGWF 2
NLPY+KSLFLGWF
Sbjct: 223 NLPYMKSLFLGWF 235
>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533046|gb|ESR44229.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 928
Score = 111 bits (277), Expect = 2e-22
Identities = 51/59 (86%), Positives = 56/59 (94%)
Frame = -1
Query: 178 IARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
+ARGMGS KY++LK RQVKIETEAWEQAA EYRELL+DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 180 VARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238
>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533045|gb|ESR44228.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 1030
Score = 111 bits (277), Expect = 2e-22
Identities = 51/59 (86%), Positives = 56/59 (94%)
Frame = -1
Query: 178 IARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
+ARGMGS KY++LK RQVKIETEAWEQAA EYRELL+DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 180 VARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238
>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533044|gb|ESR44227.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 933
Score = 111 bits (277), Expect = 2e-22
Identities = 51/59 (86%), Positives = 56/59 (94%)
Frame = -1
Query: 178 IARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
+ARGMGS KY++LK RQVKIETEAWEQAA EYRELL+DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 180 VARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 110 bits (275), Expect = 4e-22
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = -1
Query: 181 IIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
++ GMG +KYQ LKRRQVK+ETEAWEQAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 172 MLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWF 231
>ref|XP_009619460.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Nicotiana tomentosiformis]
Length = 1021
Score = 110 bits (275), Expect = 4e-22
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = -1
Query: 181 IIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
++ GMG +KYQ LKRRQVK+ETEAWEQAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 173 MLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWF 232
>emb|CDP02357.1| unnamed protein product [Coffea canephora]
Length = 1040
Score = 110 bits (275), Expect = 4e-22
Identities = 64/135 (47%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Frame = -1
Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXE--LLEGMG 227
DEF+ RPS R Q+S++GL K LL M
Sbjct: 115 DEFLARPSLNFARNQISINGLSQKSYASLAEAIAVSSTDVEEDTSVVAADEVHELLSEMK 174
Query: 226 XXXXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKL 47
GMGSKKY LKRRQVKIETEAWEQAA EY+ELL DMCE KL
Sbjct: 175 KEDRRQMSFRWRKHHRAVYGMGSKKYHALKRRQVKIETEAWEQAANEYKELLNDMCEHKL 234
Query: 46 APNLPYIKSLFLGWF 2
APNLPY+KSLFLGWF
Sbjct: 235 APNLPYMKSLFLGWF 249
>ref|NP_001289520.1| DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Nicotiana sylvestris]
gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY RecName:
Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor [Nicotiana sylvestris]
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 110 bits (275), Expect = 4e-22
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = -1
Query: 181 IIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
++ GMG +KYQ LKRRQVK+ETEAWEQAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 172 MLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWF 231
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
[Nicotiana tabacum] gi|21425665|emb|CAC95020.1|
mitochondrial and chloroplast RNA polymerase [Nicotiana
tabacum]
Length = 1021
Score = 110 bits (275), Expect = 4e-22
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = -1
Query: 181 IIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
++ GMG +KYQ LKRRQVK+ETEAWEQAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 173 MLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWF 232
>gb|KDO72326.1| hypothetical protein CISIN_1g036741mg [Citrus sinensis]
Length = 1030
Score = 109 bits (273), Expect = 7e-22
Identities = 50/59 (84%), Positives = 56/59 (94%)
Frame = -1
Query: 178 IARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
+ARGMGS KY++LK RQVKIETEAWE+AA EYRELL+DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 180 VARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238
>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Citrus sinensis]
Length = 1026
Score = 109 bits (273), Expect = 7e-22
Identities = 50/59 (84%), Positives = 56/59 (94%)
Frame = -1
Query: 178 IARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
+ARGMGS KY++LK RQVKIETEAWE+AA EYRELL+DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 176 VARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 234
>ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Nelumbo nucifera]
Length = 1031
Score = 109 bits (272), Expect = 9e-22
Identities = 55/81 (67%), Positives = 59/81 (72%)
Frame = -1
Query: 244 LLEGMGXXXXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLID 65
LLE MG + GMG KY LL+RRQVKIETEAWEQAAKEYRELL+D
Sbjct: 161 LLEEMGKEEKKELELRDQKQIKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYRELLMD 220
Query: 64 MCEQKLAPNLPYIKSLFLGWF 2
MCEQKLAPNLPY+KSLFLGWF
Sbjct: 221 MCEQKLAPNLPYMKSLFLGWF 241
>ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
gi|223526525|gb|EEF28787.1| conserved hypothetical
protein [Ricinus communis]
Length = 395
Score = 108 bits (271), Expect = 1e-21
Identities = 49/57 (85%), Positives = 55/57 (96%)
Frame = -1
Query: 172 RGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAPNLPYIKSLFLGWF 2
RGMGSKKYQ+LK+RQVKIETEAWE A KEY+ELL+DMCE+KLAPNLPY+KSLFLGWF
Sbjct: 150 RGMGSKKYQMLKKRQVKIETEAWEWAVKEYKELLMDMCEKKLAPNLPYMKSLFLGWF 206
>ref|XP_008379468.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial [Malus domestica]
Length = 1025
Score = 107 bits (267), Expect = 3e-21
Identities = 58/133 (43%), Positives = 70/133 (52%)
Frame = -1
Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
+ ++G PS+ VR + +G C K LL+ M
Sbjct: 105 ESYLGNPSYWSVRTPIGFNGFCAKGYASVAEVVSSTDAEEDVSLVDEVQE--LLQQMSKE 162
Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
RGMG KY LKRRQ+KIETEAWE+AAKEYREL++DMCE KLAP
Sbjct: 163 GKRQTDHWRRMRLRRVRGMGQAKYLALKRRQIKIETEAWERAAKEYRELMMDMCEHKLAP 222
Query: 40 NLPYIKSLFLGWF 2
NLPY+KSLFLGWF
Sbjct: 223 NLPYMKSLFLGWF 235
>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Solanum tuberosum]
Length = 1019
Score = 107 bits (266), Expect = 5e-21
Identities = 60/133 (45%), Positives = 72/133 (54%)
Frame = -1
Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
DEF+ RP ++ QVS + +C K ELL +
Sbjct: 98 DEFLRRPLLCAMKSQVSNNDICRKSYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKE 157
Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
R++ G+ +KY LKRRQVKIET+AWE AAKEYRELL DMCEQKLAP
Sbjct: 158 EKKQFTFRRRNQRLLTSGIDRRKYPALKRRQVKIETQAWELAAKEYRELLFDMCEQKLAP 217
Query: 40 NLPYIKSLFLGWF 2
NLPY+KSLFLGWF
Sbjct: 218 NLPYVKSLFLGWF 230
>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Solanum lycopersicum]
Length = 1022
Score = 107 bits (266), Expect = 5e-21
Identities = 60/133 (45%), Positives = 72/133 (54%)
Frame = -1
Query: 400 DEFMGRPSFGGVRKQVSVSGLCPKXXXXXXXXXXXXXXXXXXXXXXXXXXXELLEGMGXX 221
DEF+ RP ++ QVS + +C K ELL +
Sbjct: 101 DEFLRRPLLCAMKSQVSNNDICRKNYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKE 160
Query: 220 XXXXXXXXXXXXRIIARGMGSKKYQLLKRRQVKIETEAWEQAAKEYRELLIDMCEQKLAP 41
R++ G+ +KY L RRQVKIET+AWEQAAKEYRELL DMCEQKLAP
Sbjct: 161 EKKQFTFRRRKQRMLTSGIDRRKYPALMRRQVKIETQAWEQAAKEYRELLFDMCEQKLAP 220
Query: 40 NLPYIKSLFLGWF 2
NLPY+KSLFLGWF
Sbjct: 221 NLPYVKSLFLGWF 233