BLASTX nr result
ID: Cornus23_contig00038071
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00038071
(348 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CDO98608.1| unnamed protein product [Coffea canephora] 77 2e-26
ref|XP_009604369.1| PREDICTED: DNA-directed RNA polymerase III s... 77 3e-26
ref|XP_009758465.1| PREDICTED: DNA-directed RNA polymerase III s... 77 6e-26
ref|XP_011085923.1| PREDICTED: DNA-directed RNA polymerase III s... 79 6e-25
emb|CBI35069.3| unnamed protein product [Vitis vinifera] 77 2e-24
ref|XP_010659064.1| PREDICTED: DNA-directed RNA polymerase III s... 77 2e-24
ref|XP_010312066.1| PREDICTED: DNA-directed RNA polymerase III s... 77 3e-24
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s... 77 4e-24
ref|XP_010100608.1| DNA-directed RNA polymerase III subunit RPC2... 75 8e-24
ref|XP_010043725.1| PREDICTED: DNA-directed RNA polymerase III s... 77 1e-23
gb|KCW88407.1| hypothetical protein EUGRSUZ_A007941, partial [Eu... 77 1e-23
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s... 79 2e-23
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr... 79 2e-23
ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III s... 79 2e-23
gb|KDO46559.1| hypothetical protein CISIN_1g0010923mg, partial [... 79 2e-23
ref|XP_010242621.1| PREDICTED: DNA-directed RNA polymerase III s... 78 3e-23
ref|XP_010242622.1| PREDICTED: DNA-directed RNA polymerase III s... 78 3e-23
gb|KHN40370.1| DNA-directed RNA polymerase III subunit RPC2 [Gly... 77 1e-22
ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theob... 77 5e-22
ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theob... 77 5e-22
>emb|CDO98608.1| unnamed protein product [Coffea canephora]
Length = 712
Score = 77.4 bits (189), Expect(3) = 2e-26
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLS+IG+LGHMTKISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 449 RLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCP 488
Score = 62.0 bits (149), Expect(3) = 2e-26
Identities = 30/41 (73%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAIF-YRYIG 139
++D ITVGL+R LSTGNWDVKRFRMHRKGMTQ + YIG
Sbjct: 414 VKDSITVGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIG 454
Score = 26.6 bits (57), Expect(3) = 2e-26
Identities = 17/31 (54%), Positives = 17/31 (54%)
Frame = -3
Query: 346 MNYEVRKMADAILEKPCRCRARQPSPFDFSQ 254
MN EVRK DAIL K R S FD SQ
Sbjct: 386 MNDEVRKTIDAILSKTSR-----SSRFDMSQ 411
>ref|XP_009604369.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Nicotiana
tomentosiformis]
Length = 1155
Score = 77.4 bits (189), Expect(3) = 3e-26
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLS+IG+LGHMTKISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 456 RLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCP 495
Score = 60.8 bits (146), Expect(3) = 3e-26
Identities = 29/40 (72%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
Frame = -1
Query: 255 RDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAIF-YRYIG 139
+D ITVG++R LSTGNWDVKRFRMHRKGMTQ + YIG
Sbjct: 422 KDSITVGMERTLSTGNWDVKRFRMHRKGMTQVVARLSYIG 461
Score = 27.3 bits (59), Expect(3) = 3e-26
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 346 MNYEVRKMADAILEKPCRCRARQPSPF 266
MN E RK DA+L +P R SPF
Sbjct: 393 MNDEARKTVDALLARPSRSSRLDISPF 419
>ref|XP_009758465.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Nicotiana
sylvestris] gi|698523320|ref|XP_009758466.1| PREDICTED:
DNA-directed RNA polymerase III subunit RPC2 [Nicotiana
sylvestris]
Length = 1155
Score = 77.4 bits (189), Expect(3) = 6e-26
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLS+IG+LGHMTKISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 456 RLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCP 495
Score = 60.8 bits (146), Expect(3) = 6e-26
Identities = 29/40 (72%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
Frame = -1
Query: 255 RDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAIF-YRYIG 139
+D ITVG++R LSTGNWDVKRFRMHRKGMTQ + YIG
Sbjct: 422 KDSITVGMERTLSTGNWDVKRFRMHRKGMTQVVARLSYIG 461
Score = 26.2 bits (56), Expect(3) = 6e-26
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 346 MNYEVRKMADAILEKPCRCRARQPSPF 266
MN E RK DA+L +P R SP+
Sbjct: 393 MNDEARKTVDALLARPSRSSRLDISPY 419
>ref|XP_011085923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2 [Sesamum
indicum]
Length = 1152
Score = 79.0 bits (193), Expect(2) = 6e-25
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLS+IGTLGHMTKISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 453 RLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCP 492
Score = 62.0 bits (149), Expect(2) = 6e-25
Identities = 30/41 (73%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAIF-YRYIG 139
++D ITVGL+R LSTGNWDVKRFRMHRKGMTQ + YIG
Sbjct: 418 VKDSITVGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIG 458
>emb|CBI35069.3| unnamed protein product [Vitis vinifera]
Length = 1309
Score = 77.4 bits (189), Expect(2) = 2e-24
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLS+IG+LGHMTKISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 776 RLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCP 815
Score = 61.6 bits (148), Expect(2) = 2e-24
Identities = 30/41 (73%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAIF-YRYIG 139
+RD ITVGL+R LSTGNWDVKRFRMHRKGM+Q + YIG
Sbjct: 741 VRDSITVGLERTLSTGNWDVKRFRMHRKGMSQVVARLSYIG 781
>ref|XP_010659064.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
vinifera] gi|731414225|ref|XP_010659065.1| PREDICTED:
DNA-directed RNA polymerase III subunit RPC2 [Vitis
vinifera]
Length = 1157
Score = 77.4 bits (189), Expect(2) = 2e-24
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLS+IG+LGHMTKISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 458 RLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCP 497
Score = 61.6 bits (148), Expect(2) = 2e-24
Identities = 30/41 (73%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAIF-YRYIG 139
+RD ITVGL+R LSTGNWDVKRFRMHRKGM+Q + YIG
Sbjct: 423 VRDSITVGLERTLSTGNWDVKRFRMHRKGMSQVVARLSYIG 463
>ref|XP_010312066.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Solanum
lycopersicum] gi|723738099|ref|XP_010312067.1|
PREDICTED: DNA-directed RNA polymerase III subunit RPC2
[Solanum lycopersicum]
Length = 1153
Score = 77.4 bits (189), Expect(2) = 3e-24
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLS+IG+LGHMTKISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 454 RLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQFGMLCP 493
Score = 61.2 bits (147), Expect(2) = 3e-24
Identities = 29/41 (70%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAIF-YRYIG 139
++D IT+GL+R LSTGNWDVKRFRMHRKGMTQ + YIG
Sbjct: 419 IKDSITMGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIG 459
>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
isoform X1 [Solanum tuberosum]
gi|565393087|ref|XP_006362215.1| PREDICTED: DNA-directed
RNA polymerase III subunit RPC2-like isoform X2 [Solanum
tuberosum]
Length = 1153
Score = 77.4 bits (189), Expect(2) = 4e-24
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLS+IG+LGHMTKISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 454 RLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQFGMLCP 493
Score = 60.8 bits (146), Expect(2) = 4e-24
Identities = 29/41 (70%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAIF-YRYIG 139
++D IT+GL+R LSTGNWDVKRFRMHRKGMTQ + YIG
Sbjct: 419 VKDSITMGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIG 459
>ref|XP_010100608.1| DNA-directed RNA polymerase III subunit RPC2 [Morus notabilis]
gi|587894729|gb|EXB83245.1| DNA-directed RNA polymerase
III subunit RPC2 [Morus notabilis]
Length = 786
Score = 75.1 bits (183), Expect(3) = 8e-24
Identities = 35/40 (87%), Positives = 38/40 (95%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFIG+LGHMT+I PQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 502 RLSFIGSLGHMTRILPQFEKSRKVSGPRALQPSQWGMLCP 541
Score = 56.2 bits (134), Expect(3) = 8e-24
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = -1
Query: 252 DWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
D ITVGL+R LSTGNWDVKRF+M+RKGMTQ +
Sbjct: 469 DKITVGLERSLSTGNWDVKRFKMNRKGMTQVL 500
Score = 25.8 bits (55), Expect(3) = 8e-24
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -3
Query: 337 EVRKMADAILEKPCRCRARQPSPFDFSQ 254
EVR+ D IL KP R S FDFSQ
Sbjct: 442 EVRRAVDNILSKPSR-----SSRFDFSQ 464
>ref|XP_010043725.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2 [Eucalyptus
grandis]
Length = 1152
Score = 77.4 bits (189), Expect(2) = 1e-23
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFIGTLGH+T+ISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 446 RLSFIGTLGHVTRISPQFEKSRKVSGPRALQPSQWGMLCP 485
Score = 58.9 bits (141), Expect(2) = 1e-23
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
++D IT GL+R LSTGNWDVKRFRMHRKGMTQ +
Sbjct: 411 VKDIITQGLERALSTGNWDVKRFRMHRKGMTQVL 444
>gb|KCW88407.1| hypothetical protein EUGRSUZ_A007941, partial [Eucalyptus grandis]
Length = 538
Score = 77.4 bits (189), Expect(2) = 1e-23
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFIGTLGH+T+ISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 38 RLSFIGTLGHVTRISPQFEKSRKVSGPRALQPSQWGMLCP 77
Score = 58.9 bits (141), Expect(2) = 1e-23
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
++D IT GL+R LSTGNWDVKRFRMHRKGMTQ +
Sbjct: 3 VKDIITQGLERALSTGNWDVKRFRMHRKGMTQVL 36
>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
isoform X1 [Citrus sinensis]
gi|568883651|ref|XP_006494573.1| PREDICTED: DNA-directed
RNA polymerase III subunit RPC2-like isoform X2 [Citrus
sinensis]
Length = 1149
Score = 78.6 bits (192), Expect(2) = 2e-23
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFIGTLGHMT++SPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 450 RLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
Score = 57.4 bits (137), Expect(2) = 2e-23
Identities = 26/34 (76%), Positives = 31/34 (91%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
+RD ITVGL+R LSTGN+DVKRF+MHRKGMTQ +
Sbjct: 415 VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL 448
>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
gi|557534507|gb|ESR45625.1| hypothetical protein
CICLE_v10000078mg [Citrus clementina]
Length = 1149
Score = 78.6 bits (192), Expect(2) = 2e-23
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFIGTLGHMT++SPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 450 RLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
Score = 57.4 bits (137), Expect(2) = 2e-23
Identities = 26/34 (76%), Positives = 31/34 (91%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
+RD ITVGL+R LSTGN+DVKRF+MHRKGMTQ +
Sbjct: 415 VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL 448
>ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
isoform X3 [Citrus sinensis]
Length = 1058
Score = 78.6 bits (192), Expect(2) = 2e-23
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFIGTLGHMT++SPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 359 RLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 398
Score = 57.4 bits (137), Expect(2) = 2e-23
Identities = 26/34 (76%), Positives = 31/34 (91%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
+RD ITVGL+R LSTGN+DVKRF+MHRKGMTQ +
Sbjct: 324 VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL 357
>gb|KDO46559.1| hypothetical protein CISIN_1g0010923mg, partial [Citrus sinensis]
gi|641827375|gb|KDO46560.1| hypothetical protein
CISIN_1g0010923mg, partial [Citrus sinensis]
gi|641827376|gb|KDO46561.1| hypothetical protein
CISIN_1g0010923mg, partial [Citrus sinensis]
gi|641827377|gb|KDO46562.1| hypothetical protein
CISIN_1g0010923mg, partial [Citrus sinensis]
gi|641827378|gb|KDO46563.1| hypothetical protein
CISIN_1g0010923mg, partial [Citrus sinensis]
Length = 348
Score = 78.6 bits (192), Expect(2) = 2e-23
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFIGTLGHMT++SPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 89 RLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 128
Score = 57.4 bits (137), Expect(2) = 2e-23
Identities = 26/34 (76%), Positives = 31/34 (91%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
+RD ITVGL+R LSTGN+DVKRF+MHRKGMTQ +
Sbjct: 54 VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL 87
>ref|XP_010242621.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X1
[Nelumbo nucifera]
Length = 1142
Score = 77.8 bits (190), Expect(2) = 3e-23
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFI TLGHMTKISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 445 RLSFIATLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCP 484
Score = 57.4 bits (137), Expect(2) = 3e-23
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
++D IT GL+R +STGNWD+KRFRMHRKGMTQ +
Sbjct: 410 VKDSITYGLERAISTGNWDLKRFRMHRKGMTQVL 443
>ref|XP_010242622.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X2
[Nelumbo nucifera]
Length = 1140
Score = 77.8 bits (190), Expect(2) = 3e-23
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFI TLGHMTKISPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 443 RLSFIATLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCP 482
Score = 57.4 bits (137), Expect(2) = 3e-23
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = -1
Query: 258 LRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
++D IT GL+R +STGNWD+KRFRMHRKGMTQ +
Sbjct: 408 VKDSITYGLERAISTGNWDLKRFRMHRKGMTQVL 441
>gb|KHN40370.1| DNA-directed RNA polymerase III subunit RPC2 [Glycine soja]
Length = 876
Score = 76.6 bits (187), Expect(2) = 1e-22
Identities = 35/40 (87%), Positives = 38/40 (95%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFIG LGHMT++SPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 57 RLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 96
Score = 56.2 bits (134), Expect(2) = 1e-22
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = -1
Query: 297 VAAGLGSLVHLTSLRDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
+AA + ++ LT R IT+GL+R LSTGN+++KRFRM RKGMTQ +
Sbjct: 9 IAAAIAAVQLLTRTRSIITLGLERTLSTGNFEIKRFRMERKGMTQVL 55
>ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|508727712|gb|EOY19609.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao]
Length = 1158
Score = 77.4 bits (189), Expect(2) = 5e-22
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFIGTLG+MTK+SPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 459 RLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCP 498
Score = 53.5 bits (127), Expect(2) = 5e-22
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = -1
Query: 255 RDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
R+ IT GL+R LSTGN+D+KRF+MHRKGMTQ +
Sbjct: 425 RETITFGLERTLSTGNFDIKRFKMHRKGMTQVL 457
>ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
gi|508727714|gb|EOY19611.1| DNA-directed RNA polymerase
isoform 3 [Theobroma cacao]
Length = 1153
Score = 77.4 bits (189), Expect(2) = 5e-22
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -2
Query: 164 RLSFIGTLGHMTKISPQFDKSRKVSGPRALQPSQ*GMLCP 45
RLSFIGTLG+MTK+SPQF+KSRKVSGPRALQPSQ GMLCP
Sbjct: 454 RLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCP 493
Score = 53.5 bits (127), Expect(2) = 5e-22
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = -1
Query: 255 RDWITVGLKRPLSTGNWDVKRFRMHRKGMTQAI 157
R+ IT GL+R LSTGN+D+KRF+MHRKGMTQ +
Sbjct: 420 RETITFGLERTLSTGNFDIKRFKMHRKGMTQVL 452