BLASTX nr result
ID: Cornus23_contig00037352
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00037352
(295 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABV65725.1| RNA polymerase beta'' subunit (chloroplast) [Corn... 181 3e-43
gb|ABD93753.1| RNA polymerase beta chain, partial (chloroplast) ... 178 1e-42
gb|AII18682.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18681.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18679.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18678.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18676.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18675.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18674.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18673.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18672.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18667.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18666.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18665.1| RNA polymerase beta' subunit, partial (chloroplas... 171 2e-40
gb|AII18669.1| RNA polymerase beta' subunit, partial (chloroplas... 168 2e-39
gb|AII18664.1| RNA polymerase beta' subunit, partial (chloroplas... 168 2e-39
gb|AII18684.1| RNA polymerase beta' subunit, partial (chloroplas... 167 2e-39
gb|AII18677.1| RNA polymerase beta' subunit, partial (chloroplas... 167 2e-39
gb|AII18668.1| RNA polymerase beta' subunit, partial (chloroplas... 167 2e-39
gb|ADO13866.1| RNA polymerase beta subunit, partial (chloroplast... 167 2e-39
>gb|ABV65725.1| RNA polymerase beta'' subunit (chloroplast) [Cornus florida]
Length = 1391
Score = 181 bits (458), Expect = 3e-43
Identities = 89/98 (90%), Positives = 92/98 (93%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRRYISNLSVTNDQ RHKFFSSDFSGKQ+D IPDYSERNRIICTGHCNLTYPAI
Sbjct: 504 AHSLSVKRRYISNLSVTNDQARHKFFSSDFSGKQQDRIPDYSERNRIICTGHCNLTYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
H NSDLLAKRRRNRFIIPLQSIQER+K+ IPRSGISI
Sbjct: 564 FHENSDLLAKRRRNRFIIPLQSIQERKKKRIPRSGISI 601
>gb|ABD93753.1| RNA polymerase beta chain, partial (chloroplast) [Cornus florida]
Length = 812
Score = 178 bits (452), Expect = 1e-42
Identities = 88/98 (89%), Positives = 91/98 (92%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSV RRYISNLSVTNDQ RHKFFSSDFSGKQ+D IPDYSERNRIICTGHCNLTYPAI
Sbjct: 1 AHSLSVXRRYISNLSVTNDQARHKFFSSDFSGKQQDRIPDYSERNRIICTGHCNLTYPAI 60
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
H NSDLLAKRRRNRFIIPLQSIQER+K+ IPRSGISI
Sbjct: 61 FHENSDLLAKRRRNRFIIPLQSIQERKKKRIPRSGISI 98
>gb|AII18682.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
taiwanianum]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18681.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
sieboldii]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18679.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
plicatum]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18678.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
opulus]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLLYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18676.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
lutescens]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18675.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
lentago]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18674.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
lantanoides]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18673.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
grandiflorum]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18672.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
erubescens]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18667.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
cassinoides]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18666.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
carlesii]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18665.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
amplificatum]
Length = 1384
Score = 171 bits (433), Expect = 2e-40
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18669.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
cylindricum]
Length = 1384
Score = 168 bits (425), Expect = 2e-39
Identities = 85/98 (86%), Positives = 87/98 (88%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL Y AI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLLYSAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18664.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
acerifolium]
Length = 1384
Score = 168 bits (425), Expect = 2e-39
Identities = 85/98 (86%), Positives = 87/98 (88%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRIICTG CNL Y AI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIICTGRCNLLYSAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|AII18684.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
triphyllum]
Length = 1384
Score = 167 bits (424), Expect = 2e-39
Identities = 84/98 (85%), Positives = 87/98 (88%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRI CTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIRCTGRCNLPYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRF+IPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFLIPLQSIQERENELIPSSGISI 601
>gb|AII18677.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
molle]
Length = 1384
Score = 167 bits (424), Expect = 2e-39
Identities = 84/98 (85%), Positives = 87/98 (88%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSSDFSGK+ED IPDYSE NRI CTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSDFSGKKEDRIPDYSELNRIRCTGRCNLPYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRF+IPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFLIPLQSIQERENELIPSSGISI 601
>gb|AII18668.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
clemensae]
Length = 1384
Score = 167 bits (424), Expect = 2e-39
Identities = 85/98 (86%), Positives = 87/98 (88%)
Frame = -1
Query: 295 ARSLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAI 116
A SLSVKRR ISNLS+TNDQ RHKFFSS FSGK+ED IPDYSE NRIICTG CNL YPAI
Sbjct: 504 AHSLSVKRRSISNLSITNDQARHKFFSSYFSGKKEDRIPDYSELNRIICTGRCNLIYPAI 563
Query: 115 LHGNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
LH NSDLLAKRRRNRFIIPLQSIQERE ELIP SGISI
Sbjct: 564 LHENSDLLAKRRRNRFIIPLQSIQERENELIPSSGISI 601
>gb|ADO13866.1| RNA polymerase beta subunit, partial (chloroplast) [Paracryphia
alticola]
Length = 606
Score = 167 bits (424), Expect = 2e-39
Identities = 84/96 (87%), Positives = 87/96 (90%)
Frame = -1
Query: 289 SLSVKRRYISNLSVTNDQVRHKFFSSDFSGKQEDGIPDYSERNRIICTGHCNLTYPAILH 110
SLSVKRRY SNLSVTN+Q RHKFFSSDFSGK+EDGIPDYSE NRIICTG CNL YPAIL
Sbjct: 492 SLSVKRRYSSNLSVTNNQARHKFFSSDFSGKKEDGIPDYSELNRIICTGRCNLIYPAILD 551
Query: 109 GNSDLLAKRRRNRFIIPLQSIQEREKELIPRSGISI 2
NSDLLAKRRRNRFIIPLQSIQERE EL+P SGISI
Sbjct: 552 ENSDLLAKRRRNRFIIPLQSIQERENELMPSSGISI 587