BLASTX nr result
ID: Cornus23_contig00036335
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00036335
(318 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010662492.1| PREDICTED: DNA mismatch repair protein MSH3 ... 165 1e-38
ref|XP_010662491.1| PREDICTED: DNA mismatch repair protein MSH3 ... 165 1e-38
emb|CBI31781.3| unnamed protein product [Vitis vinifera] 165 1e-38
ref|XP_010647111.1| PREDICTED: DNA mismatch repair protein MSH3-... 163 4e-38
emb|CBI29513.3| unnamed protein product [Vitis vinifera] 163 4e-38
ref|XP_010255451.1| PREDICTED: DNA mismatch repair protein MSH3 ... 162 9e-38
ref|XP_010646928.1| PREDICTED: DNA mismatch repair protein MSH3-... 162 9e-38
ref|XP_008376564.1| PREDICTED: DNA mismatch repair protein MSH3 ... 159 6e-37
ref|XP_008376563.1| PREDICTED: DNA mismatch repair protein MSH3 ... 159 6e-37
ref|XP_008376562.1| PREDICTED: DNA mismatch repair protein MSH3 ... 159 6e-37
ref|XP_008376561.1| PREDICTED: DNA mismatch repair protein MSH3 ... 159 6e-37
ref|XP_008376560.1| PREDICTED: DNA mismatch repair protein MSH3 ... 159 6e-37
ref|XP_008376559.1| PREDICTED: DNA mismatch repair protein MSH3 ... 159 6e-37
ref|XP_004496581.1| PREDICTED: DNA mismatch repair protein MSH3 ... 156 7e-36
ref|XP_006413297.1| hypothetical protein EUTSA_v10024274mg [Eutr... 155 1e-35
ref|NP_194284.2| DNA mismatch repair protein MSH3 [Arabidopsis t... 154 2e-35
gb|KMS99092.1| hypothetical protein BVRB_3g066900 [Beta vulgaris... 154 2e-35
ref|XP_010693541.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch... 154 2e-35
emb|CAB81364.1| putative DNA mismatch repair protein [Arabidopsi... 154 2e-35
emb|CAA18172.1| putative DNA mismatch repair protein [Arabidopsi... 154 2e-35
>ref|XP_010662492.1| PREDICTED: DNA mismatch repair protein MSH3 isoform X2 [Vitis
vinifera]
Length = 1078
Score = 165 bits (417), Expect = 1e-38
Identities = 84/105 (80%), Positives = 91/105 (86%), Gaps = 1/105 (0%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENI-ECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLE 141
GS +NYLVCVVEK I EN +CG+ GFDV+IGIVAVE+STGDVVH EFNDNFMRAGLE
Sbjct: 237 GSYNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVEVSTGDVVHGEFNDNFMRAGLE 296
Query: 140 AVIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
AVI S+SPAELLLG PLS TEKLLLAYAGPA+NVRVER SRDCF
Sbjct: 297 AVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCF 341
>ref|XP_010662491.1| PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Vitis
vinifera]
Length = 1111
Score = 165 bits (417), Expect = 1e-38
Identities = 84/105 (80%), Positives = 91/105 (86%), Gaps = 1/105 (0%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENI-ECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLE 141
GS +NYLVCVVEK I EN +CG+ GFDV+IGIVAVE+STGDVVH EFNDNFMRAGLE
Sbjct: 237 GSYNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVEVSTGDVVHGEFNDNFMRAGLE 296
Query: 140 AVIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
AVI S+SPAELLLG PLS TEKLLLAYAGPA+NVRVER SRDCF
Sbjct: 297 AVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCF 341
>emb|CBI31781.3| unnamed protein product [Vitis vinifera]
Length = 903
Score = 165 bits (417), Expect = 1e-38
Identities = 84/105 (80%), Positives = 91/105 (86%), Gaps = 1/105 (0%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENI-ECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLE 141
GS +NYLVCVVEK I EN +CG+ GFDV+IGIVAVE+STGDVVH EFNDNFMRAGLE
Sbjct: 105 GSYNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVEVSTGDVVHGEFNDNFMRAGLE 164
Query: 140 AVIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
AVI S+SPAELLLG PLS TEKLLLAYAGPA+NVRVER SRDCF
Sbjct: 165 AVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCF 209
>ref|XP_010647111.1| PREDICTED: DNA mismatch repair protein MSH3-like [Vitis vinifera]
Length = 682
Score = 163 bits (413), Expect = 4e-38
Identities = 83/105 (79%), Positives = 91/105 (86%), Gaps = 1/105 (0%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENI-ECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLE 141
GS +NYLVCVVEK I EN +CG+ GFDV+IGIVAV++STGDVVH EFNDNFMRAGLE
Sbjct: 239 GSYNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVKVSTGDVVHGEFNDNFMRAGLE 298
Query: 140 AVIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
AVI S+SPAELLLG PLS TEKLLLAYAGPA+NVRVER SRDCF
Sbjct: 299 AVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCF 343
>emb|CBI29513.3| unnamed protein product [Vitis vinifera]
Length = 470
Score = 163 bits (413), Expect = 4e-38
Identities = 83/105 (79%), Positives = 91/105 (86%), Gaps = 1/105 (0%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENI-ECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLE 141
GS +NYLVCVVEK I EN +CG+ GFDV+IGIVAV++STGDVVH EFNDNFMRAGLE
Sbjct: 239 GSYNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVKVSTGDVVHGEFNDNFMRAGLE 298
Query: 140 AVIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
AVI S+SPAELLLG PLS TEKLLLAYAGPA+NVRVER SRDCF
Sbjct: 299 AVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCF 343
>ref|XP_010255451.1| PREDICTED: DNA mismatch repair protein MSH3 [Nelumbo nucifera]
Length = 1119
Score = 162 bits (410), Expect = 9e-38
Identities = 78/104 (75%), Positives = 88/104 (84%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
G SNYL CVVEK ++ EN ECG+E GFDV+IG++AVE STGDVVH EFNDN R GLE+
Sbjct: 245 GPSSNYLACVVEKGVLIENRECGVEGGFDVRIGLIAVETSTGDVVHGEFNDNVTRTGLES 304
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
VI SLSPAE+LLGEPLS TEKLLLAYAGP +NVRVERASR+CF
Sbjct: 305 VILSLSPAEILLGEPLSKQTEKLLLAYAGPTSNVRVERASRECF 348
>ref|XP_010646928.1| PREDICTED: DNA mismatch repair protein MSH3-like [Vitis vinifera]
gi|296088374|emb|CBI37346.3| unnamed protein product
[Vitis vinifera]
Length = 490
Score = 162 bits (410), Expect = 9e-38
Identities = 82/105 (78%), Positives = 91/105 (86%), Gaps = 1/105 (0%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENI-ECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLE 141
GS +NYLVCVVEK I EN +CG+ GFDV+IGIVAVE+STGDVVH +FNDNFMRAGLE
Sbjct: 237 GSYNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVEVSTGDVVHGKFNDNFMRAGLE 296
Query: 140 AVIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
AVI S+SPAELLLG PLS TEKLLLAYAGPA+NVR+ER SRDCF
Sbjct: 297 AVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRLERTSRDCF 341
>ref|XP_008376564.1| PREDICTED: DNA mismatch repair protein MSH3 isoform X6 [Malus
domestica]
Length = 858
Score = 159 bits (403), Expect = 6e-37
Identities = 76/105 (72%), Positives = 92/105 (87%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
G SNYL CVV+K + EN++ G+ESG +VKIGIVAVE+STGDVV+ EF+DNFMR+GLEA
Sbjct: 249 GGDSNYLACVVDKSVSVENVDGGVESGVEVKIGIVAVEVSTGDVVYGEFDDNFMRSGLEA 308
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCFK 3
V+ SLSPAELLLGEPLS T+K+LLA++GPA+NVRVER SRDCFK
Sbjct: 309 VVLSLSPAELLLGEPLSKQTDKMLLAFSGPASNVRVERVSRDCFK 353
>ref|XP_008376563.1| PREDICTED: DNA mismatch repair protein MSH3 isoform X5 [Malus
domestica]
Length = 878
Score = 159 bits (403), Expect = 6e-37
Identities = 76/105 (72%), Positives = 92/105 (87%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
G SNYL CVV+K + EN++ G+ESG +VKIGIVAVE+STGDVV+ EF+DNFMR+GLEA
Sbjct: 249 GGDSNYLACVVDKSVSVENVDGGVESGVEVKIGIVAVEVSTGDVVYGEFDDNFMRSGLEA 308
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCFK 3
V+ SLSPAELLLGEPLS T+K+LLA++GPA+NVRVER SRDCFK
Sbjct: 309 VVLSLSPAELLLGEPLSKQTDKMLLAFSGPASNVRVERVSRDCFK 353
>ref|XP_008376562.1| PREDICTED: DNA mismatch repair protein MSH3 isoform X4 [Malus
domestica]
Length = 887
Score = 159 bits (403), Expect = 6e-37
Identities = 76/105 (72%), Positives = 92/105 (87%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
G SNYL CVV+K + EN++ G+ESG +VKIGIVAVE+STGDVV+ EF+DNFMR+GLEA
Sbjct: 249 GGDSNYLACVVDKSVSVENVDGGVESGVEVKIGIVAVEVSTGDVVYGEFDDNFMRSGLEA 308
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCFK 3
V+ SLSPAELLLGEPLS T+K+LLA++GPA+NVRVER SRDCFK
Sbjct: 309 VVLSLSPAELLLGEPLSKQTDKMLLAFSGPASNVRVERVSRDCFK 353
>ref|XP_008376561.1| PREDICTED: DNA mismatch repair protein MSH3 isoform X3 [Malus
domestica]
Length = 1122
Score = 159 bits (403), Expect = 6e-37
Identities = 76/105 (72%), Positives = 92/105 (87%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
G SNYL CVV+K + EN++ G+ESG +VKIGIVAVE+STGDVV+ EF+DNFMR+GLEA
Sbjct: 249 GGDSNYLACVVDKSVSVENVDGGVESGVEVKIGIVAVEVSTGDVVYGEFDDNFMRSGLEA 308
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCFK 3
V+ SLSPAELLLGEPLS T+K+LLA++GPA+NVRVER SRDCFK
Sbjct: 309 VVLSLSPAELLLGEPLSKQTDKMLLAFSGPASNVRVERVSRDCFK 353
>ref|XP_008376560.1| PREDICTED: DNA mismatch repair protein MSH3 isoform X2 [Malus
domestica]
Length = 1126
Score = 159 bits (403), Expect = 6e-37
Identities = 76/105 (72%), Positives = 92/105 (87%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
G SNYL CVV+K + EN++ G+ESG +VKIGIVAVE+STGDVV+ EF+DNFMR+GLEA
Sbjct: 249 GGDSNYLACVVDKSVSVENVDGGVESGVEVKIGIVAVEVSTGDVVYGEFDDNFMRSGLEA 308
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCFK 3
V+ SLSPAELLLGEPLS T+K+LLA++GPA+NVRVER SRDCFK
Sbjct: 309 VVLSLSPAELLLGEPLSKQTDKMLLAFSGPASNVRVERVSRDCFK 353
>ref|XP_008376559.1| PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Malus
domestica]
Length = 1142
Score = 159 bits (403), Expect = 6e-37
Identities = 76/105 (72%), Positives = 92/105 (87%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
G SNYL CVV+K + EN++ G+ESG +VKIGIVAVE+STGDVV+ EF+DNFMR+GLEA
Sbjct: 249 GGDSNYLACVVDKSVSVENVDGGVESGVEVKIGIVAVEVSTGDVVYGEFDDNFMRSGLEA 308
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCFK 3
V+ SLSPAELLLGEPLS T+K+LLA++GPA+NVRVER SRDCFK
Sbjct: 309 VVLSLSPAELLLGEPLSKQTDKMLLAFSGPASNVRVERVSRDCFK 353
>ref|XP_004496581.1| PREDICTED: DNA mismatch repair protein MSH3 [Cicer arietinum]
Length = 1076
Score = 156 bits (394), Expect = 7e-36
Identities = 76/104 (73%), Positives = 89/104 (85%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
G+ SNYL+CVVEK I+ E CG+E GFDV+IGIV VEISTGDVV+ EFNDNF+R+ LEA
Sbjct: 226 GTRSNYLLCVVEKSILGEKSSCGVEGGFDVRIGIVGVEISTGDVVYGEFNDNFLRSELEA 285
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
V+ SLSPAELLLG+PLS TEKLLLA+AGP++N RVE ASRDCF
Sbjct: 286 VVVSLSPAELLLGKPLSKQTEKLLLAFAGPSSNARVEHASRDCF 329
>ref|XP_006413297.1| hypothetical protein EUTSA_v10024274mg [Eutrema salsugineum]
gi|557114467|gb|ESQ54750.1| hypothetical protein
EUTSA_v10024274mg [Eutrema salsugineum]
Length = 1088
Score = 155 bits (391), Expect = 1e-35
Identities = 76/105 (72%), Positives = 90/105 (85%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
GS SN+LVCVV++R+ TE + CG+E FDV++GIV VEISTG+VVH EFNDNFMR+GLEA
Sbjct: 228 GSQSNFLVCVVDERVNTETLGCGLEVSFDVRVGIVGVEISTGEVVHGEFNDNFMRSGLEA 287
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCFK 3
VI SLSPAELLLG+PLS TEK LLA+AGP +NVRVERAS D F+
Sbjct: 288 VILSLSPAELLLGQPLSQQTEKFLLAHAGPTSNVRVERASLDRFR 332
>ref|NP_194284.2| DNA mismatch repair protein MSH3 [Arabidopsis thaliana]
gi|12644077|sp|O65607.2|MSH3_ARATH RecName: Full=DNA
mismatch repair protein MSH3; Short=AtMSH3; AltName:
Full=MutS protein homolog 3 gi|3319876|emb|CAA07684.1|
Msh3 protein [Arabidopsis thaliana]
gi|332659675|gb|AEE85075.1| DNA mismatch repair protein
MSH3 [Arabidopsis thaliana]
Length = 1081
Score = 154 bits (390), Expect = 2e-35
Identities = 74/104 (71%), Positives = 90/104 (86%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
GS SN+LVCVV++R+ +E + CGIE FDV++G+V VEISTG+VV+ EFNDNFMR+GLEA
Sbjct: 231 GSQSNFLVCVVDERVKSETLGCGIEMSFDVRVGVVGVEISTGEVVYEEFNDNFMRSGLEA 290
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
VI SLSPAELLLG+PLS TEK L+A+AGP +NVRVERAS DCF
Sbjct: 291 VILSLSPAELLLGQPLSQQTEKFLVAHAGPTSNVRVERASLDCF 334
>gb|KMS99092.1| hypothetical protein BVRB_3g066900 [Beta vulgaris subsp. vulgaris]
Length = 889
Score = 154 bits (390), Expect = 2e-35
Identities = 75/105 (71%), Positives = 90/105 (85%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
GS +NYL CVVE+ ++ EN++ GIE +VKIG+VAVE STGDV++ EFNDNFMRA LEA
Sbjct: 105 GSLNNYLFCVVEEEVLMENVDFGIEDVSEVKIGVVAVETSTGDVIYGEFNDNFMRARLEA 164
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCFK 3
++ SLSPAELLLGEPLS T+KLLLAYAGPA++VRVE ASRDCFK
Sbjct: 165 ILLSLSPAELLLGEPLSKRTQKLLLAYAGPASSVRVEHASRDCFK 209
>ref|XP_010693541.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH3
[Beta vulgaris subsp. vulgaris]
Length = 1094
Score = 154 bits (390), Expect = 2e-35
Identities = 75/105 (71%), Positives = 90/105 (85%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
GS +NYL CVVE+ ++ EN++ GIE +VKIG+VAVE STGDV++ EFNDNFMRA LEA
Sbjct: 244 GSLNNYLFCVVEEEVLMENVDFGIEDVSEVKIGVVAVETSTGDVIYGEFNDNFMRARLEA 303
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCFK 3
++ SLSPAELLLGEPLS T+KLLLAYAGPA++VRVE ASRDCFK
Sbjct: 304 ILLSLSPAELLLGEPLSKRTQKLLLAYAGPASSVRVEHASRDCFK 348
>emb|CAB81364.1| putative DNA mismatch repair protein [Arabidopsis thaliana]
Length = 1076
Score = 154 bits (390), Expect = 2e-35
Identities = 74/104 (71%), Positives = 90/104 (86%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
GS SN+LVCVV++R+ +E + CGIE FDV++G+V VEISTG+VV+ EFNDNFMR+GLEA
Sbjct: 214 GSQSNFLVCVVDERVKSETLGCGIEMSFDVRVGVVGVEISTGEVVYEEFNDNFMRSGLEA 273
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
VI SLSPAELLLG+PLS TEK L+A+AGP +NVRVERAS DCF
Sbjct: 274 VILSLSPAELLLGQPLSQQTEKFLVAHAGPTSNVRVERASLDCF 317
>emb|CAA18172.1| putative DNA mismatch repair protein [Arabidopsis thaliana]
Length = 1076
Score = 154 bits (390), Expect = 2e-35
Identities = 74/104 (71%), Positives = 90/104 (86%)
Frame = -2
Query: 317 GSCSNYLVCVVEKRIVTENIECGIESGFDVKIGIVAVEISTGDVVHAEFNDNFMRAGLEA 138
GS SN+LVCVV++R+ +E + CGIE FDV++G+V VEISTG+VV+ EFNDNFMR+GLEA
Sbjct: 214 GSQSNFLVCVVDERVKSETLGCGIEMSFDVRVGVVGVEISTGEVVYEEFNDNFMRSGLEA 273
Query: 137 VIFSLSPAELLLGEPLSGHTEKLLLAYAGPAANVRVERASRDCF 6
VI SLSPAELLLG+PLS TEK L+A+AGP +NVRVERAS DCF
Sbjct: 274 VILSLSPAELLLGQPLSQQTEKFLVAHAGPTSNVRVERASLDCF 317