BLASTX nr result
ID: Cornus23_contig00033299
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cornus23_contig00033299 (337 letters) Database: ./nr 77,306,371 sequences; 28,104,191,420 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_010243933.1| PREDICTED: twinkle homolog protein, chloropl... 49 6e-10 ref|XP_008225676.1| PREDICTED: twinkle homolog protein, chloropl... 48 4e-09 ref|XP_011460420.1| PREDICTED: twinkle homolog protein, chloropl... 52 2e-08 >ref|XP_010243933.1| PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nelumbo nucifera] Length = 769 Score = 48.5 bits (114), Expect(2) = 6e-10 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Frame = -3 Query: 326 MLCPHRSPLQKLFNSKVLLGSKQFLKPTPFPALPTTPSS----PTHRLIFSNLPSKPISK 159 +L PHR PL L +S +L+GSK L+ PF +P + S T+RL+FS P KPIS Sbjct: 59 VLHPHR-PLHTLLSSNILMGSKNLLRSAPF-TIPISFSRLHHFHTYRLLFSTSPPKPISI 116 Query: 158 IHPLALRTS 132 H L ++ S Sbjct: 117 FHHLIVKKS 125 Score = 41.6 bits (96), Expect(2) = 6e-10 Identities = 18/38 (47%), Positives = 30/38 (78%) Frame = -1 Query: 115 PKEKGLDSVQIGAILRGKLEMLGINDDICKPGQYVHLL 2 P+E+ +DS+++ A L+ +LEM+GI+ C+PGQY HL+ Sbjct: 144 PEEETIDSIRLNA-LKKRLEMIGIDCTSCRPGQYNHLI 180 >ref|XP_008225676.1| PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Prunus mume] Length = 698 Score = 48.1 bits (113), Expect(2) = 4e-09 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 8/72 (11%) Frame = -3 Query: 314 HRSPLQKLF----NSKVLLGSKQFLKPTPFPALPTTPSSP----THRLIFSNLPSKPISK 159 HR PL+KL ++ +L+G+ Q K TP P P TPS +HRL+FS L KP+SK Sbjct: 6 HR-PLRKLSFLTSSAGLLMGTVQLFKSTPCPN-PLTPSQRHSFHSHRLVFSPLSPKPMSK 63 Query: 158 IHPLALRTSWIS 123 PL LRT+ S Sbjct: 64 TRPLCLRTNGYS 75 Score = 39.3 bits (90), Expect(2) = 4e-09 Identities = 21/39 (53%), Positives = 27/39 (69%) Frame = -1 Query: 118 NPKEKGLDSVQIGAILRGKLEMLGINDDICKPGQYVHLL 2 N +EK +D Q+ L+ KLEMLGI+ IC PGQY HL+ Sbjct: 90 NAEEKRVDFNQLSR-LKLKLEMLGIDYGICMPGQYNHLI 127 >ref|XP_011460420.1| PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X1 [Fragaria vesca subsp. vesca] Length = 702 Score = 51.6 bits (122), Expect(2) = 2e-08 Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Frame = -3 Query: 314 HRSPLQKLF----NSKVLLGSKQFLKPTPF----PALPTTPSSPTHRLIFSNLPSKPISK 159 HR PL KL ++ +L+ SKQ LK TPF P P T +HRL+FS P KP SK Sbjct: 6 HR-PLHKLSALSSSTSLLMASKQLLKSTPFTNPSPPSPQTHLFHSHRLVFSAFPPKPTSK 64 Query: 158 IHPLALRTSWIS 123 P LRT+ S Sbjct: 65 ARPFCLRTNGYS 76 Score = 33.1 bits (74), Expect(2) = 2e-08 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -1 Query: 73 LRGKLEMLGINDDICKPGQYVHLL 2 L KL+ +GI+D+IC+P QY HL+ Sbjct: 102 LTKKLKEIGIDDEICEPAQYGHLI 125