BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00033270
         (639 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su...   256   1e-65
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   256   1e-65
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su...   256   1e-65
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   256   1e-65
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   255   1e-65
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   255   1e-65
ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV su...   254   3e-65
ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV su...   254   3e-65
ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV su...   253   5e-65
ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV su...   253   5e-65
ref|XP_010325436.1| PREDICTED: DNA-directed RNA polymerase IV su...   253   8e-65
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase IV su...   253   8e-65
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   253   8e-65
emb|CDP09818.1| unnamed protein product [Coffea canephora]            247   4e-63
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su...   246   1e-62
ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV su...   246   1e-62
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r...   246   1e-62
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su...   246   1e-62
ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV su...   240   6e-61
ref|XP_012488706.1| PREDICTED: DNA-directed RNA polymerase IV su...   236   8e-60

>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
           [Vitis vinifera]
          Length = 1354

 Score =  256 bits (653), Expect = 1e-65
 Identities = 137/210 (65%), Positives = 149/210 (70%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDIIYRPL DGDIVLINRPPSIH HS IALSVKVLP+NSV+SINPL CSPFRGDFDGDCL
Sbjct: 290 GDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCL 349

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGY+PQS+DSR EL ELV+LN+QLINRQSGRNLLSL+ DSL+AAHLV+EDGV+LN     
Sbjct: 350 HGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQ 409

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCP QLQ PAI         IKA   D   WTGKQLFS+LLPP F Y FP  GV I
Sbjct: 410 QLEMFCPYQLQSPAI---------IKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRI 460

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKHC 2
                              GNL  SL+K C
Sbjct: 461 SDGELISSSDGSAWLRDIDGNLFSSLVKDC 490


>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
           [Vitis vinifera]
          Length = 1458

 Score =  256 bits (653), Expect = 1e-65
 Identities = 137/210 (65%), Positives = 149/210 (70%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDIIYRPL DGDIVLINRPPSIH HS IALSVKVLP+NSV+SINPL CSPFRGDFDGDCL
Sbjct: 396 GDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCL 455

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGY+PQS+DSR EL ELV+LN+QLINRQSGRNLLSL+ DSL+AAHLV+EDGV+LN     
Sbjct: 456 HGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQ 515

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCP QLQ PAI         IKA   D   WTGKQLFS+LLPP F Y FP  GV I
Sbjct: 516 QLEMFCPYQLQSPAI---------IKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRI 566

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKHC 2
                              GNL  SL+K C
Sbjct: 567 SDGELISSSDGSAWLRDIDGNLFSSLVKDC 596


>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Vitis vinifera]
          Length = 1460

 Score =  256 bits (653), Expect = 1e-65
 Identities = 137/210 (65%), Positives = 149/210 (70%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDIIYRPL DGDIVLINRPPSIH HS IALSVKVLP+NSV+SINPL CSPFRGDFDGDCL
Sbjct: 396 GDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCL 455

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGY+PQS+DSR EL ELV+LN+QLINRQSGRNLLSL+ DSL+AAHLV+EDGV+LN     
Sbjct: 456 HGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQ 515

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCP QLQ PAI         IKA   D   WTGKQLFS+LLPP F Y FP  GV I
Sbjct: 516 QLEMFCPYQLQSPAI---------IKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRI 566

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKHC 2
                              GNL  SL+K C
Sbjct: 567 SDGELISSSDGSAWLRDIDGNLFSSLVKDC 596


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  256 bits (653), Expect = 1e-65
 Identities = 137/210 (65%), Positives = 149/210 (70%)
 Frame = -3

Query: 631  GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
            GDIIYRPL DGDIVLINRPPSIH HS IALSVKVLP+NSV+SINPL CSPFRGDFDGDCL
Sbjct: 399  GDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCL 458

Query: 451  HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
            HGY+PQS+DSR EL ELV+LN+QLINRQSGRNLLSL+ DSL+AAHLV+EDGV+LN     
Sbjct: 459  HGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQ 518

Query: 271  XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
                FCP QLQ PAI         IKA   D   WTGKQLFS+LLPP F Y FP  GV I
Sbjct: 519  QLEMFCPYQLQSPAI---------IKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRI 569

Query: 91   XXXXXXXXXXXXXXXXXXXGNLLHSLIKHC 2
                               GNL  SL+K C
Sbjct: 570  SDGELISSSDGSAWLRDIDGNLFSSLVKDC 599


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
           [Solanum tuberosum]
          Length = 1233

 Score =  255 bits (652), Expect = 1e-65
 Identities = 129/209 (61%), Positives = 152/209 (72%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDII+RPLIDGD+V+INRPPSIH HS IALSV++LPINSVLSINPL+CSPFRGDFDGDCL
Sbjct: 169 GDIIHRPLIDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCL 228

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGY+PQSIDSR EL ELV+L +QL++ Q+G+NLLSL+HDSLTAAHL+LE GV L+     
Sbjct: 229 HGYIPQSIDSRIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQ 288

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCPRQL + AI         +KA   + C+WTGKQLFSLLLP + EY FPS GVCI
Sbjct: 289 QLQMFCPRQLGMTAI---------VKAPPGNLCYWTGKQLFSLLLPSDLEYVFPSNGVCI 339

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
                               NL +SL+KH
Sbjct: 340 SEGEIVTSSGGSSWLRDVSDNLFYSLVKH 368


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
           [Solanum tuberosum]
          Length = 1446

 Score =  255 bits (652), Expect = 1e-65
 Identities = 129/209 (61%), Positives = 152/209 (72%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDII+RPLIDGD+V+INRPPSIH HS IALSV++LPINSVLSINPL+CSPFRGDFDGDCL
Sbjct: 382 GDIIHRPLIDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCL 441

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGY+PQSIDSR EL ELV+L +QL++ Q+G+NLLSL+HDSLTAAHL+LE GV L+     
Sbjct: 442 HGYIPQSIDSRIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQ 501

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCPRQL + AI         +KA   + C+WTGKQLFSLLLP + EY FPS GVCI
Sbjct: 502 QLQMFCPRQLGMTAI---------VKAPPGNLCYWTGKQLFSLLLPSDLEYVFPSNGVCI 552

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
                               NL +SL+KH
Sbjct: 553 SEGEIVTSSGGSSWLRDVSDNLFYSLVKH 581


>ref|XP_009593318.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
           [Nicotiana tomentosiformis]
          Length = 1211

 Score =  254 bits (649), Expect = 3e-65
 Identities = 131/209 (62%), Positives = 150/209 (71%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDIIYRPLIDGD+VLINRPPSIH HS IALSV++LPI SVLSINPL+CSPFRGDFDGDCL
Sbjct: 142 GDIIYRPLIDGDVVLINRPPSIHQHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCL 201

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGYVPQSIDSR EL ELV LN+QLI+ QSG+NLLSL+HDSLTAAHLVLE GV L+     
Sbjct: 202 HGYVPQSIDSRVELSELVGLNRQLIDGQSGQNLLSLSHDSLTAAHLVLEGGVFLDRFQVQ 261

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCP Q+ +PAI         ++A S +  +WTGKQLFSL LP + + DFPS GVCI
Sbjct: 262 QLQMFCPHQVGMPAI---------VRAPSRNRSYWTGKQLFSLFLPSDLDCDFPSNGVCI 312

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
                               NL +SL+KH
Sbjct: 313 SDGEIVTSSGGSSWLRDASENLFYSLVKH 341


>ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Nicotiana tomentosiformis]
          Length = 1447

 Score =  254 bits (649), Expect = 3e-65
 Identities = 131/209 (62%), Positives = 150/209 (71%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDIIYRPLIDGD+VLINRPPSIH HS IALSV++LPI SVLSINPL+CSPFRGDFDGDCL
Sbjct: 378 GDIIYRPLIDGDVVLINRPPSIHQHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCL 437

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGYVPQSIDSR EL ELV LN+QLI+ QSG+NLLSL+HDSLTAAHLVLE GV L+     
Sbjct: 438 HGYVPQSIDSRVELSELVGLNRQLIDGQSGQNLLSLSHDSLTAAHLVLEGGVFLDRFQVQ 497

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCP Q+ +PAI         ++A S +  +WTGKQLFSL LP + + DFPS GVCI
Sbjct: 498 QLQMFCPHQVGMPAI---------VRAPSRNRSYWTGKQLFSLFLPSDLDCDFPSNGVCI 548

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
                               NL +SL+KH
Sbjct: 549 SDGEIVTSSGGSSWLRDASENLFYSLVKH 577


>ref|XP_009797468.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
           [Nicotiana sylvestris]
          Length = 1254

 Score =  253 bits (647), Expect = 5e-65
 Identities = 129/209 (61%), Positives = 150/209 (71%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDIIYRPLIDGD+VLINRPPSIH HS IALSV++LPI SVLSINPL+CSPFRGDFDGDCL
Sbjct: 185 GDIIYRPLIDGDVVLINRPPSIHQHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCL 244

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGYVPQSIDSR EL ELV LN+QLI+ QSG+NLLSL+HDSLTAAHL+LE+GV L+     
Sbjct: 245 HGYVPQSIDSRVELSELVGLNRQLIDGQSGQNLLSLSHDSLTAAHLILEEGVFLDRFQMQ 304

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCP Q+ +PAI         ++A S +  +WTGKQLF L LP + + DFPS GVCI
Sbjct: 305 QLQMFCPHQVGMPAI---------VRAPSRNRSYWTGKQLFGLFLPSDLDCDFPSNGVCI 355

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
                               NL +SL+KH
Sbjct: 356 SDGEIVTSSGGSSWLRDASENLFYSLVKH 384


>ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Nicotiana sylvestris] gi|698503797|ref|XP_009797464.1|
           PREDICTED: DNA-directed RNA polymerase IV subunit 1
           isoform X1 [Nicotiana sylvestris]
           gi|698503800|ref|XP_009797465.1| PREDICTED: DNA-directed
           RNA polymerase IV subunit 1 isoform X1 [Nicotiana
           sylvestris] gi|698503802|ref|XP_009797466.1| PREDICTED:
           DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Nicotiana sylvestris] gi|698503804|ref|XP_009797467.1|
           PREDICTED: DNA-directed RNA polymerase IV subunit 1
           isoform X1 [Nicotiana sylvestris]
          Length = 1447

 Score =  253 bits (647), Expect = 5e-65
 Identities = 129/209 (61%), Positives = 150/209 (71%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDIIYRPLIDGD+VLINRPPSIH HS IALSV++LPI SVLSINPL+CSPFRGDFDGDCL
Sbjct: 378 GDIIYRPLIDGDVVLINRPPSIHQHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCL 437

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGYVPQSIDSR EL ELV LN+QLI+ QSG+NLLSL+HDSLTAAHL+LE+GV L+     
Sbjct: 438 HGYVPQSIDSRVELSELVGLNRQLIDGQSGQNLLSLSHDSLTAAHLILEEGVFLDRFQMQ 497

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCP Q+ +PAI         ++A S +  +WTGKQLF L LP + + DFPS GVCI
Sbjct: 498 QLQMFCPHQVGMPAI---------VRAPSRNRSYWTGKQLFGLFLPSDLDCDFPSNGVCI 548

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
                               NL +SL+KH
Sbjct: 549 SDGEIVTSSGGSSWLRDASENLFYSLVKH 577


>ref|XP_010325436.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
           [Solanum lycopersicum]
          Length = 1307

 Score =  253 bits (645), Expect = 8e-65
 Identities = 127/209 (60%), Positives = 151/209 (72%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDII+RPL+DGD+V+INRPPSIH HS IALSV++LPINSVLSINPL+CSPFRGDFDGDCL
Sbjct: 243 GDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCL 302

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGY+PQSIDS  EL ELV+L +QL++ Q+G+NLLSL+HDSLTAAHL+LE GV L+     
Sbjct: 303 HGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQ 362

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCPRQL + AI         +KA   + C+WTGKQLFSLLLP + EY FPS GVCI
Sbjct: 363 QLQMFCPRQLGMTAI---------VKAPPGNICYWTGKQLFSLLLPSDLEYVFPSNGVCI 413

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
                               NL +SL+KH
Sbjct: 414 SEGEIVTSSGGSSWLRDASDNLFYSLVKH 442


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
           [Solanum lycopersicum] gi|723724576|ref|XP_010325435.1|
           PREDICTED: DNA-directed RNA polymerase IV subunit 1
           isoform X1 [Solanum lycopersicum]
          Length = 1446

 Score =  253 bits (645), Expect = 8e-65
 Identities = 127/209 (60%), Positives = 151/209 (72%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDII+RPL+DGD+V+INRPPSIH HS IALSV++LPINSVLSINPL+CSPFRGDFDGDCL
Sbjct: 382 GDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCL 441

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGY+PQSIDS  EL ELV+L +QL++ Q+G+NLLSL+HDSLTAAHL+LE GV L+     
Sbjct: 442 HGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQ 501

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCPRQL + AI         +KA   + C+WTGKQLFSLLLP + EY FPS GVCI
Sbjct: 502 QLQMFCPRQLGMTAI---------VKAPPGNICYWTGKQLFSLLLPSDLEYVFPSNGVCI 552

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
                               NL +SL+KH
Sbjct: 553 SEGEIVTSSGGSSWLRDASDNLFYSLVKH 581


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  253 bits (645), Expect = 8e-65
 Identities = 127/209 (60%), Positives = 151/209 (72%)
 Frame = -3

Query: 631 GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
           GDII+RPL+DGD+V+INRPPSIH HS IALSV++LPINSVLSINPL+CSPFRGDFDGDCL
Sbjct: 74  GDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCL 133

Query: 451 HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
           HGY+PQSIDS  EL ELV+L +QL++ Q+G+NLLSL+HDSLTAAHL+LE GV L+     
Sbjct: 134 HGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQ 193

Query: 271 XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
               FCPRQL + AI         +KA   + C+WTGKQLFSLLLP + EY FPS GVCI
Sbjct: 194 QLQMFCPRQLGMTAI---------VKAPPGNICYWTGKQLFSLLLPSDLEYVFPSNGVCI 244

Query: 91  XXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
                               NL +SL+KH
Sbjct: 245 SEGEIVTSSGGSSWLRDASDNLFYSLVKH 273


>emb|CDP09818.1| unnamed protein product [Coffea canephora]
          Length = 1511

 Score =  247 bits (631), Expect = 4e-63
 Identities = 127/210 (60%), Positives = 149/210 (70%)
 Frame = -3

Query: 631  GDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGDCL 452
            GD++YRP++DGDIVLINRPPSIH HS ++LSV++LPINSVLSINPLICSP RGDFDGDCL
Sbjct: 436  GDVLYRPMLDGDIVLINRPPSIHQHSMLSLSVRILPINSVLSINPLICSPLRGDFDGDCL 495

Query: 451  HGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXXXX 272
            HGYV QS+DSR EL+ELV+LNKQL+N QSGRNLLSL+HDSLTAAHL+LEDGV L+     
Sbjct: 496  HGYVSQSVDSRVELNELVALNKQLLNGQSGRNLLSLSHDSLTAAHLILEDGVTLDKFQMQ 555

Query: 271  XXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGVCI 92
                FC   + +PAI KA            + CFWTGKQLFSLL+PP F+Y   S GV I
Sbjct: 556  QLQMFCSCPMPIPAITKAPG----------NKCFWTGKQLFSLLIPPCFDYVSQSNGVQI 605

Query: 91   XXXXXXXXXXXXXXXXXXXGNLLHSLIKHC 2
                               GNL HSL++ C
Sbjct: 606  SKGEIVTSSSGSSWLRDNDGNLFHSLVRCC 635


>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Gossypium raimondii]
          Length = 1300

 Score =  246 bits (627), Expect = 1e-62
 Identities = 134/214 (62%), Positives = 149/214 (69%), Gaps = 3/214 (1%)
 Frame = -3

Query: 637  KIGDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGD 458
            ++GD IYRPL DGD VLINRPPSIH HS IALSVKVLP+NSV+SINPLICSPFRGDFDGD
Sbjct: 408  QVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGD 467

Query: 457  CLHGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXX 278
            CLHGYVPQSI++R EL ELVSL++QLIN QSGRNLLSL+HDSLTAA+LV EDGV+LN   
Sbjct: 468  CLHGYVPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQ 527

Query: 277  XXXXXXFCPRQLQLPAIAKA---SSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPS 107
                  FCP    LPAI KA   S+P             WTGKQLFS+L PPEF+Y F  
Sbjct: 528  MQQLEMFCPNHSPLPAIVKAPLLSNP------------VWTGKQLFSMLFPPEFDYVFAP 575

Query: 106  TGVCIXXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
            +GV I                   GNL  SLIKH
Sbjct: 576  SGVVIHNGDLICSSEGSSWLRDADGNLFQSLIKH 609


>ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
           [Gossypium raimondii]
          Length = 1340

 Score =  246 bits (627), Expect = 1e-62
 Identities = 134/214 (62%), Positives = 149/214 (69%), Gaps = 3/214 (1%)
 Frame = -3

Query: 637 KIGDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGD 458
           ++GD IYRPL DGD VLINRPPSIH HS IALSVKVLP+NSV+SINPLICSPFRGDFDGD
Sbjct: 267 QVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGD 326

Query: 457 CLHGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXX 278
           CLHGYVPQSI++R EL ELVSL++QLIN QSGRNLLSL+HDSLTAA+LV EDGV+LN   
Sbjct: 327 CLHGYVPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQ 386

Query: 277 XXXXXXFCPRQLQLPAIAKA---SSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPS 107
                 FCP    LPAI KA   S+P             WTGKQLFS+L PPEF+Y F  
Sbjct: 387 MQQLEMFCPNHSPLPAIVKAPLLSNP------------VWTGKQLFSMLFPPEFDYVFAP 434

Query: 106 TGVCIXXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
           +GV I                   GNL  SLIKH
Sbjct: 435 SGVVIHNGDLICSSEGSSWLRDADGNLFQSLIKH 468


>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1478

 Score =  246 bits (627), Expect = 1e-62
 Identities = 134/214 (62%), Positives = 149/214 (69%), Gaps = 3/214 (1%)
 Frame = -3

Query: 637  KIGDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGD 458
            ++GD IYRPL DGD VLINRPPSIH HS IALSVKVLP+NSV+SINPLICSPFRGDFDGD
Sbjct: 405  QVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGD 464

Query: 457  CLHGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXX 278
            CLHGYVPQSI++R EL ELVSL++QLIN QSGRNLLSL+HDSLTAA+LV EDGV+LN   
Sbjct: 465  CLHGYVPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQ 524

Query: 277  XXXXXXFCPRQLQLPAIAKA---SSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPS 107
                  FCP    LPAI KA   S+P             WTGKQLFS+L PPEF+Y F  
Sbjct: 525  MQQLEMFCPNHSPLPAIVKAPLLSNP------------VWTGKQLFSMLFPPEFDYVFAP 572

Query: 106  TGVCIXXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
            +GV I                   GNL  SLIKH
Sbjct: 573  SGVVIHNGDLICSSEGSSWLRDADGNLFQSLIKH 606


>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X1 [Gossypium raimondii]
            gi|763758424|gb|KJB25755.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
            gi|763758426|gb|KJB25757.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
          Length = 1481

 Score =  246 bits (627), Expect = 1e-62
 Identities = 134/214 (62%), Positives = 149/214 (69%), Gaps = 3/214 (1%)
 Frame = -3

Query: 637  KIGDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGD 458
            ++GD IYRPL DGD VLINRPPSIH HS IALSVKVLP+NSV+SINPLICSPFRGDFDGD
Sbjct: 408  QVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGD 467

Query: 457  CLHGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXX 278
            CLHGYVPQSI++R EL ELVSL++QLIN QSGRNLLSL+HDSLTAA+LV EDGV+LN   
Sbjct: 468  CLHGYVPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQ 527

Query: 277  XXXXXXFCPRQLQLPAIAKA---SSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPS 107
                  FCP    LPAI KA   S+P             WTGKQLFS+L PPEF+Y F  
Sbjct: 528  MQQLEMFCPNHSPLPAIVKAPLLSNP------------VWTGKQLFSMLFPPEFDYVFAP 575

Query: 106  TGVCIXXXXXXXXXXXXXXXXXXXGNLLHSLIKH 5
            +GV I                   GNL  SLIKH
Sbjct: 576  SGVVIHNGDLICSSEGSSWLRDADGNLFQSLIKH 609


>ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
          Length = 1453

 Score =  240 bits (612), Expect = 6e-61
 Identities = 131/212 (61%), Positives = 145/212 (68%)
 Frame = -3

Query: 637  KIGDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGD 458
            +IGDIIYRPL DGD VLINRPPSIH HS IALSVKVLP  + L+INPL C PFRGDFDGD
Sbjct: 403  RIGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPAAAALAINPLCCPPFRGDFDGD 462

Query: 457  CLHGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXX 278
            CLHGYVPQS+D+R EL ELV+L+KQL N QSGRNLLSLN DSL AAHLV+EDGV L+   
Sbjct: 463  CLHGYVPQSVDTRAELCELVALDKQLTNVQSGRNLLSLNQDSLVAAHLVMEDGVFLSLFE 522

Query: 277  XXXXXXFCPRQLQLPAIAKASSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPSTGV 98
                  FCPRQL  PAI         +KA  P+ C WTGKQL S+LLP  F++DFPS  V
Sbjct: 523  MQQLQMFCPRQLLSPAI---------VKAPLPNDCAWTGKQLVSMLLPRGFDHDFPSNNV 573

Query: 97   CIXXXXXXXXXXXXXXXXXXXGNLLHSLIKHC 2
             I                   GNL  SLIKHC
Sbjct: 574  YI-RDGELISSEGSFWLRDTDGNLFQSLIKHC 604


>ref|XP_012488706.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Gossypium
            raimondii]
          Length = 1485

 Score =  236 bits (602), Expect = 8e-60
 Identities = 129/215 (60%), Positives = 149/215 (69%), Gaps = 3/215 (1%)
 Frame = -3

Query: 637  KIGDIIYRPLIDGDIVLINRPPSIHPHSFIALSVKVLPINSVLSINPLICSPFRGDFDGD 458
            ++GDIIYRPL +GDIVLINRPPSIH HSFIALSVKVLP++S +SINPLICSPFRGDFDGD
Sbjct: 414  RLGDIIYRPLNNGDIVLINRPPSIHQHSFIALSVKVLPVSSSVSINPLICSPFRGDFDGD 473

Query: 457  CLHGYVPQSIDSRTELHELVSLNKQLINRQSGRNLLSLNHDSLTAAHLVLEDGVVLNXXX 278
            CLHGYVPQSI++R EL ELVSLN+QLIN QSGRNLLSL+HDSL+AA+LV  DGV+LN   
Sbjct: 474  CLHGYVPQSINTRVELSELVSLNRQLINGQSGRNLLSLSHDSLSAAYLVNGDGVLLNLYE 533

Query: 277  XXXXXXFCPRQLQLPAIAKA---SSPYKYIKATSPDACFWTGKQLFSLLLPPEFEYDFPS 107
                  FCP +   PAI KA   S+P             WTGKQLFS+L PPE +Y F  
Sbjct: 534  MQQLEMFCPNRSPSPAIIKAPLLSNP------------VWTGKQLFSMLFPPELDYGFSP 581

Query: 106  TGVCIXXXXXXXXXXXXXXXXXXXGNLLHSLIKHC 2
            + + I                   GNL  SLIK+C
Sbjct: 582  SDLVIRNGELITSSEGSSWFRDADGNLFESLIKNC 616