BLASTX nr result

ID: Cornus23_contig00032720 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00032720
         (393 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    62   1e-14
emb|CAN68285.1| hypothetical protein VITISV_017014 [Vitis vinifera]    45   6e-09
emb|CAN78912.1| hypothetical protein VITISV_004522 [Vitis vinifera]    45   1e-07
emb|CAN82574.1| hypothetical protein VITISV_034720 [Vitis vinifera]    44   4e-07
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]             60   5e-07
ref|XP_010273505.1| PREDICTED: retrovirus-related Pol polyprotei...    58   2e-06
emb|CAN81994.1| hypothetical protein VITISV_043102 [Vitis vinifera]    42   3e-06
emb|CAN60145.1| hypothetical protein VITISV_019412 [Vitis vinifera]    43   6e-06
emb|CAN63575.1| hypothetical protein VITISV_003796 [Vitis vinifera]    46   1e-05

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score = 62.4 bits (150), Expect(3) = 1e-14
 Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
 Frame = +2

Query: 110  KRYVERVLEEFNMKNVKAIVMPLVGHSKLN-KLCPTNKEEKDAMTNISYSSS 262
            ++Y+ERVLE FNMKN K +  PL GH KL+ K+CPT  EEK  M  + YSS+
Sbjct: 1063 EKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSA 1114



 Score = 42.0 bits (97), Expect(3) = 1e-14
 Identities = 17/33 (51%), Positives = 25/33 (75%)
 Frame = +3

Query: 6    FSRTSVDQCDYFRKFSDGNFIILLFYVDEEVVV 104
            + +T  D C YF++FS+ NFIILL YVD+ ++V
Sbjct: 983  YLKTYSDPCVYFKRFSENNFIILLLYVDDMLIV 1015



 Score = 21.2 bits (43), Expect(3) = 1e-14
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 91   RKLWLSQE 114
            RKLWLSQE
Sbjct: 1056 RKLWLSQE 1063


>emb|CAN68285.1| hypothetical protein VITISV_017014 [Vitis vinifera]
          Length = 328

 Score = 45.4 bits (106), Expect(3) = 6e-09
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +3

Query: 3   GFSRTSVDQCDYFRKFSDGNFIILLFYVDEEVVV 104
           G+ RT+ D C +  KFSDG FIILL YVD+ ++V
Sbjct: 18  GYDRTASDHCVFVNKFSDGEFIILLLYVDDMLIV 51



 Score = 39.7 bits (91), Expect(3) = 6e-09
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = +2

Query: 116 YVERVLEEFNMKNVKAIVMPLVGHSKL-NKLCPTNKEEKDAMTNISYSS 259
           Y+E+VL++FNM   K +  PL  H KL +K   ++++EK+ M  + Y+S
Sbjct: 101 YIEKVLDKFNMGKAKLVSSPLGSHLKLSSKQSLSSEKEKEEMRKVPYAS 149



 Score = 21.2 bits (43), Expect(3) = 6e-09
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 91  RKLWLSQE 114
           RKLWLSQE
Sbjct: 92  RKLWLSQE 99


>emb|CAN78912.1| hypothetical protein VITISV_004522 [Vitis vinifera]
          Length = 882

 Score = 45.1 bits (105), Expect(2) = 1e-07
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +2

Query: 110 KRYVERVLEEFNMKNVKAIVMPLVGHSKL-NKLCPTNKEEKDAMTNISYSS 259
           ++Y+E+VLE FNM   K +  PL  H KL N+  P+  +EK+ M  + Y+S
Sbjct: 714 EQYIEKVLERFNMSKAKVVSSPLASHFKLNNRHNPSTDKEKEDMIKVLYAS 764



 Score = 37.4 bits (85), Expect(2) = 1e-07
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +3

Query: 3   GFSRTSVDQCDYFRKFSDGNFIILLFYVDEEVVVITRD 116
           G+ +T+ D   + +KFSD +F+ILL YVD+ ++V   D
Sbjct: 651 GYRKTTSDHYVFVQKFSDDDFVILLLYVDDILIVGRND 688


>emb|CAN82574.1| hypothetical protein VITISV_034720 [Vitis vinifera]
          Length = 1172

 Score = 43.5 bits (101), Expect(2) = 4e-07
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 116  YVERVLEEFNMKNVKAIVMPLVGHSKLNK-LCPTNKEEKDAMTNISYSSS 262
            YV++VL  FNM   K +  PL  H KL+K   P  +EE+D M+ + Y+S+
Sbjct: 961  YVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASA 1010



 Score = 37.0 bits (84), Expect(2) = 4e-07
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 3   GFSRTSVDQCDYFRKFSDGNFIILLFYVDEEVV 101
           GF R   D C YF+ F D ++IILL YVD+ ++
Sbjct: 892 GFKRXEADHCCYFKSF-DNSYIILLLYVDDMLI 923


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score = 60.5 bits (145), Expect = 5e-07
 Identities = 28/51 (54%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
 Frame = +2

Query: 110 KRYVERVLEEFNMKNVKAIVMPLVGHSKLNK-LCPTNKEEKDAMTNISYSS 259
           + Y+ERVLE FNMKN K +  PL  H KL+K  CPT ++EK++M++I YSS
Sbjct: 423 ENYIERVLERFNMKNAKPVNTPLAAHFKLSKRCCPTTEKEKESMSHIPYSS 473


>ref|XP_010273505.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Nelumbo nucifera]
          Length = 229

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
 Frame = +2

Query: 104 YHKRYVERVLEEFNMKNVKAIVMPLVGHSKLN-KLCPTNKEEKDAMTNISYSSS 262
           + ++Y+E+VLE FNM N K +  PL GH KLN K CPT++++K  M  + Y+S+
Sbjct: 84  FQEKYIEKVLERFNMSNAKPMTTPLAGHFKLNTKQCPTSEKDKAEMKKVPYASA 137


>emb|CAN81994.1| hypothetical protein VITISV_043102 [Vitis vinifera]
          Length = 575

 Score = 42.4 bits (98), Expect(2) = 3e-06
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 116 YVERVLEEFNMKNVKAIVMPLVGHSKLNK-LCPTNKEEKDAMTNISYSSS 262
           Y ++VL  FNM   K I  PL  H KL+K   P  +EE+D M+ + Y+S+
Sbjct: 313 YAKKVLNRFNMNEAKPISTPLGSHFKLSKEQSPKTEEERDHMSKVPYASA 362



 Score = 35.4 bits (80), Expect(2) = 3e-06
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
 Frame = +3

Query: 3   GFSRTSVDQCDYFRKFSDGNFIILLFYVDEEV--------VVITRDMLNGCLK 137
           GF R   D C YF+ F +   I+LL++  +++        + I RD  NG LK
Sbjct: 255 GFKRCEADHCCYFKSFDNSYIILLLYFAMKDLGAAKQILGMRIIRDKANGTLK 307


>emb|CAN60145.1| hypothetical protein VITISV_019412 [Vitis vinifera]
          Length = 1227

 Score = 42.7 bits (99), Expect(2) = 6e-06
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 116  YVERVLEEFNMKNVKAIVMPLVGHSKLNK-LCPTNKEEKDAMTNISYSSS 262
            YV++VL  FNM   K +  PL  H KL+K   P   EE+D M+ + Y+S+
Sbjct: 965  YVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTXEERDHMSKVPYASA 1014



 Score = 33.9 bits (76), Expect(2) = 6e-06
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 3   GFSRTSVDQCDYFRKFSDGNFIILLFYVDEEVV 101
           GF R   D C Y + F D ++IILL YVD+ ++
Sbjct: 899 GFKRCEXDHCCYXKSF-DNSYIILLLYVDDMLI 930


>emb|CAN63575.1| hypothetical protein VITISV_003796 [Vitis vinifera]
          Length = 1305

 Score = 46.2 bits (108), Expect(2) = 1e-05
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +2

Query: 110  KRYVERVLEEFNMKNVKAIVMPLVGHSKLNKL-CPTNKEEKDAMTNISYSS 259
            + Y+E++L+ FNM N K+   P+V   K +K  CP N +E++ M  I YSS
Sbjct: 922  RAYIEKILKRFNMHNCKSTKAPIVKGDKFSKAQCPQNDDEREXMRTIXYSS 972



 Score = 29.6 bits (65), Expect(2) = 1e-05
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
 Frame = +3

Query: 3   GFSRTSVDQCDYFRKFSDGNFIILLFYVDE--------EVVVITRDMLN 125
           GF   +VD+C Y R  S  ++I L+ YVD+        ++++ T+ ML+
Sbjct: 842 GFKENTVDRCIYLR-VSGSSYIFLVLYVDDILLASNDSDLLIETKHMLS 889


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