BLASTX nr result
ID: Cornus23_contig00032720
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00032720
(393 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 62 1e-14
emb|CAN68285.1| hypothetical protein VITISV_017014 [Vitis vinifera] 45 6e-09
emb|CAN78912.1| hypothetical protein VITISV_004522 [Vitis vinifera] 45 1e-07
emb|CAN82574.1| hypothetical protein VITISV_034720 [Vitis vinifera] 44 4e-07
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum] 60 5e-07
ref|XP_010273505.1| PREDICTED: retrovirus-related Pol polyprotei... 58 2e-06
emb|CAN81994.1| hypothetical protein VITISV_043102 [Vitis vinifera] 42 3e-06
emb|CAN60145.1| hypothetical protein VITISV_019412 [Vitis vinifera] 43 6e-06
emb|CAN63575.1| hypothetical protein VITISV_003796 [Vitis vinifera] 46 1e-05
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 62.4 bits (150), Expect(3) = 1e-14
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +2
Query: 110 KRYVERVLEEFNMKNVKAIVMPLVGHSKLN-KLCPTNKEEKDAMTNISYSSS 262
++Y+ERVLE FNMKN K + PL GH KL+ K+CPT EEK M + YSS+
Sbjct: 1063 EKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSA 1114
Score = 42.0 bits (97), Expect(3) = 1e-14
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +3
Query: 6 FSRTSVDQCDYFRKFSDGNFIILLFYVDEEVVV 104
+ +T D C YF++FS+ NFIILL YVD+ ++V
Sbjct: 983 YLKTYSDPCVYFKRFSENNFIILLLYVDDMLIV 1015
Score = 21.2 bits (43), Expect(3) = 1e-14
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 91 RKLWLSQE 114
RKLWLSQE
Sbjct: 1056 RKLWLSQE 1063
>emb|CAN68285.1| hypothetical protein VITISV_017014 [Vitis vinifera]
Length = 328
Score = 45.4 bits (106), Expect(3) = 6e-09
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 3 GFSRTSVDQCDYFRKFSDGNFIILLFYVDEEVVV 104
G+ RT+ D C + KFSDG FIILL YVD+ ++V
Sbjct: 18 GYDRTASDHCVFVNKFSDGEFIILLLYVDDMLIV 51
Score = 39.7 bits (91), Expect(3) = 6e-09
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +2
Query: 116 YVERVLEEFNMKNVKAIVMPLVGHSKL-NKLCPTNKEEKDAMTNISYSS 259
Y+E+VL++FNM K + PL H KL +K ++++EK+ M + Y+S
Sbjct: 101 YIEKVLDKFNMGKAKLVSSPLGSHLKLSSKQSLSSEKEKEEMRKVPYAS 149
Score = 21.2 bits (43), Expect(3) = 6e-09
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 91 RKLWLSQE 114
RKLWLSQE
Sbjct: 92 RKLWLSQE 99
>emb|CAN78912.1| hypothetical protein VITISV_004522 [Vitis vinifera]
Length = 882
Score = 45.1 bits (105), Expect(2) = 1e-07
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 110 KRYVERVLEEFNMKNVKAIVMPLVGHSKL-NKLCPTNKEEKDAMTNISYSS 259
++Y+E+VLE FNM K + PL H KL N+ P+ +EK+ M + Y+S
Sbjct: 714 EQYIEKVLERFNMSKAKVVSSPLASHFKLNNRHNPSTDKEKEDMIKVLYAS 764
Score = 37.4 bits (85), Expect(2) = 1e-07
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +3
Query: 3 GFSRTSVDQCDYFRKFSDGNFIILLFYVDEEVVVITRD 116
G+ +T+ D + +KFSD +F+ILL YVD+ ++V D
Sbjct: 651 GYRKTTSDHYVFVQKFSDDDFVILLLYVDDILIVGRND 688
>emb|CAN82574.1| hypothetical protein VITISV_034720 [Vitis vinifera]
Length = 1172
Score = 43.5 bits (101), Expect(2) = 4e-07
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 116 YVERVLEEFNMKNVKAIVMPLVGHSKLNK-LCPTNKEEKDAMTNISYSSS 262
YV++VL FNM K + PL H KL+K P +EE+D M+ + Y+S+
Sbjct: 961 YVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASA 1010
Score = 37.0 bits (84), Expect(2) = 4e-07
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 3 GFSRTSVDQCDYFRKFSDGNFIILLFYVDEEVV 101
GF R D C YF+ F D ++IILL YVD+ ++
Sbjct: 892 GFKRXEADHCCYFKSF-DNSYIILLLYVDDMLI 923
>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
Length = 687
Score = 60.5 bits (145), Expect = 5e-07
Identities = 28/51 (54%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = +2
Query: 110 KRYVERVLEEFNMKNVKAIVMPLVGHSKLNK-LCPTNKEEKDAMTNISYSS 259
+ Y+ERVLE FNMKN K + PL H KL+K CPT ++EK++M++I YSS
Sbjct: 423 ENYIERVLERFNMKNAKPVNTPLAAHFKLSKRCCPTTEKEKESMSHIPYSS 473
>ref|XP_010273505.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Nelumbo nucifera]
Length = 229
Score = 58.2 bits (139), Expect = 2e-06
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +2
Query: 104 YHKRYVERVLEEFNMKNVKAIVMPLVGHSKLN-KLCPTNKEEKDAMTNISYSSS 262
+ ++Y+E+VLE FNM N K + PL GH KLN K CPT++++K M + Y+S+
Sbjct: 84 FQEKYIEKVLERFNMSNAKPMTTPLAGHFKLNTKQCPTSEKDKAEMKKVPYASA 137
>emb|CAN81994.1| hypothetical protein VITISV_043102 [Vitis vinifera]
Length = 575
Score = 42.4 bits (98), Expect(2) = 3e-06
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 116 YVERVLEEFNMKNVKAIVMPLVGHSKLNK-LCPTNKEEKDAMTNISYSSS 262
Y ++VL FNM K I PL H KL+K P +EE+D M+ + Y+S+
Sbjct: 313 YAKKVLNRFNMNEAKPISTPLGSHFKLSKEQSPKTEEERDHMSKVPYASA 362
Score = 35.4 bits (80), Expect(2) = 3e-06
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +3
Query: 3 GFSRTSVDQCDYFRKFSDGNFIILLFYVDEEV--------VVITRDMLNGCLK 137
GF R D C YF+ F + I+LL++ +++ + I RD NG LK
Sbjct: 255 GFKRCEADHCCYFKSFDNSYIILLLYFAMKDLGAAKQILGMRIIRDKANGTLK 307
>emb|CAN60145.1| hypothetical protein VITISV_019412 [Vitis vinifera]
Length = 1227
Score = 42.7 bits (99), Expect(2) = 6e-06
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 116 YVERVLEEFNMKNVKAIVMPLVGHSKLNK-LCPTNKEEKDAMTNISYSSS 262
YV++VL FNM K + PL H KL+K P EE+D M+ + Y+S+
Sbjct: 965 YVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTXEERDHMSKVPYASA 1014
Score = 33.9 bits (76), Expect(2) = 6e-06
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 3 GFSRTSVDQCDYFRKFSDGNFIILLFYVDEEVV 101
GF R D C Y + F D ++IILL YVD+ ++
Sbjct: 899 GFKRCEXDHCCYXKSF-DNSYIILLLYVDDMLI 930
>emb|CAN63575.1| hypothetical protein VITISV_003796 [Vitis vinifera]
Length = 1305
Score = 46.2 bits (108), Expect(2) = 1e-05
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 110 KRYVERVLEEFNMKNVKAIVMPLVGHSKLNKL-CPTNKEEKDAMTNISYSS 259
+ Y+E++L+ FNM N K+ P+V K +K CP N +E++ M I YSS
Sbjct: 922 RAYIEKILKRFNMHNCKSTKAPIVKGDKFSKAQCPQNDDEREXMRTIXYSS 972
Score = 29.6 bits (65), Expect(2) = 1e-05
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Frame = +3
Query: 3 GFSRTSVDQCDYFRKFSDGNFIILLFYVDE--------EVVVITRDMLN 125
GF +VD+C Y R S ++I L+ YVD+ ++++ T+ ML+
Sbjct: 842 GFKENTVDRCIYLR-VSGSSYIFLVLYVDDILLASNDSDLLIETKHMLS 889