BLASTX nr result
ID: Cornus23_contig00029248
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00029248
(1061 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABV65725.1| RNA polymerase beta'' subunit (chloroplast) [Corn... 602 e-169
gb|ABD93753.1| RNA polymerase beta chain, partial (chloroplast) ... 602 e-169
gb|ADO13882.1| RNA polymerase beta subunit, partial (chloroplast... 595 e-167
gb|AEM44882.1| RNA polymerase beta chain, partial [Hydrangea sp.... 591 e-166
gb|ABQ15065.1| RNA polymerase beta' subunit [Exbucklandia populnea] 585 e-164
gb|AHE41656.1| RNA polymerase beta' subunit (chloroplast) [Daphn... 583 e-164
gb|ABD93856.1| RNA polymerase beta chain, partial (chloroplast) ... 582 e-163
gb|ABQ15064.1| RNA polymerase beta' subunit [Daphniphyllum sp. 2... 581 e-163
ref|YP_009159528.1| RpoC2 (chloroplast) [Dendropanax morbifer] g... 581 e-163
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb... 580 e-163
gb|AHE41658.1| RNA polymerase beta' subunit, partial (chloroplas... 579 e-162
gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liqu... 578 e-162
gb|ABQ15071.1| RNA polymerase beta' subunit [Liquidambar styraci... 578 e-162
ref|YP_009161669.1| RNA polymerase beta' subunit (chloroplast) [... 577 e-162
ref|YP_009122715.1| RNA polymerase beta'' subunit (chloroplast) ... 577 e-162
ref|YP_004935542.1| RNA polymerase beta'' subunit (chloroplast) ... 577 e-162
ref|YP_008963681.1| RNA polymerase beta' subunit (chloroplast) [... 577 e-162
gb|AEM44881.1| RNA polymerase beta chain, partial [Petalonyx par... 576 e-161
gb|AII18683.1| RNA polymerase beta' subunit, partial (chloroplas... 576 e-161
gb|AII18680.1| RNA polymerase beta' subunit, partial (chloroplas... 576 e-161
>gb|ABV65725.1| RNA polymerase beta'' subunit (chloroplast) [Cornus florida]
Length = 1391
Score = 602 bits (1552), Expect = e-169
Identities = 301/318 (94%), Positives = 303/318 (95%), Gaps = 2/318 (0%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFPPDLLQE DNVQLRVVNYILYGNGKPIRGI DTSIQLVRTCLVLNWGQDKKSS I+EA
Sbjct: 796 LFPPDLLQERDNVQLRVVNYILYGNGKPIRGIPDTSIQLVRTCLVLNWGQDKKSSYIDEA 855
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVEIR NGLI+DFLRIDLVKSPISYT KRNDPSGSGLISENGSDRTNINPFSSIYSK
Sbjct: 856 HASFVEIRTNGLIQDFLRIDLVKSPISYTSKRNDPSGSGLISENGSDRTNINPFSSIYSK 915
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNC QMGPFNDVKYHNVIKESIKKDPLI
Sbjct: 916 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCSQMGPFNDVKYHNVIKESIKKDPLI 975
Query: 521 PIRNSLGPLGTALQISNFYSFYH--LITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGK 348
IRN LGPLGTAL I NF SFYH LITHNQLLVTNYLQLDNLKQ FQVLKYYLMDENGK
Sbjct: 976 RIRNLLGPLGTALPIYNFDSFYHLNLITHNQLLVTNYLQLDNLKQAFQVLKYYLMDENGK 1035
Query: 347 IYNPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 168
IYNPDPCSNIFLNP NLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI
Sbjct: 1036 IYNPDPCSNIFLNPLNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 1095
Query: 167 VQIDSLVIRSAKPYLATP 114
VQIDSLVIRSAKPYLATP
Sbjct: 1096 VQIDSLVIRSAKPYLATP 1113
>gb|ABD93753.1| RNA polymerase beta chain, partial (chloroplast) [Cornus florida]
Length = 812
Score = 602 bits (1552), Expect = e-169
Identities = 301/318 (94%), Positives = 303/318 (95%), Gaps = 2/318 (0%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFPPDLLQE DNVQLRVVNYILYGNGKPIRGI DTSIQLVRTCLVLNWGQDKKSS I+EA
Sbjct: 293 LFPPDLLQERDNVQLRVVNYILYGNGKPIRGIPDTSIQLVRTCLVLNWGQDKKSSYIDEA 352
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVEIR NGLI+DFLRIDLVKSPISYT KRNDPSGSGLISENGSDRTNINPFSSIYSK
Sbjct: 353 HASFVEIRTNGLIQDFLRIDLVKSPISYTSKRNDPSGSGLISENGSDRTNINPFSSIYSK 412
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNC QMGPFNDVKYHNVIKESIKKDPLI
Sbjct: 413 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCSQMGPFNDVKYHNVIKESIKKDPLI 472
Query: 521 PIRNSLGPLGTALQISNFYSFYH--LITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGK 348
IRN LGPLGTAL I NF SFYH LITHNQLLVTNYLQLDNLKQ FQVLKYYLMDENGK
Sbjct: 473 RIRNLLGPLGTALPIYNFDSFYHLNLITHNQLLVTNYLQLDNLKQAFQVLKYYLMDENGK 532
Query: 347 IYNPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 168
IYNPDPCSNIFLNP NLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI
Sbjct: 533 IYNPDPCSNIFLNPLNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 592
Query: 167 VQIDSLVIRSAKPYLATP 114
VQIDSLVIRSAKPYLATP
Sbjct: 593 VQIDSLVIRSAKPYLATP 610
>gb|ADO13882.1| RNA polymerase beta subunit, partial (chloroplast) [Citronella
suaveolens]
Length = 1169
Score = 595 bits (1534), Expect = e-167
Identities = 292/318 (91%), Positives = 303/318 (95%), Gaps = 2/318 (0%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFPPDLLQE DNVQ RV+NYILYGNGKPIRGISDTSIQLVRTCLVLNW QDKKSSSIEEA
Sbjct: 769 LFPPDLLQERDNVQFRVINYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSIEEA 828
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYS- 705
ASFVEI+ GLIRDFLRIDLVKSPISYTGKRNDPSGSGLIS+NGSD TNINPFSSIYS
Sbjct: 829 RASFVEIKTKGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISDNGSDHTNINPFSSIYSD 888
Query: 704 -KAKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDP 528
KA+IQ+SLNQNQGTIHTLLNRNKECQSLIILSSSNC +MGPFNDVKYHNVIKESI+KDP
Sbjct: 889 SKARIQESLNQNQGTIHTLLNRNKECQSLIILSSSNCSRMGPFNDVKYHNVIKESIQKDP 948
Query: 527 LIPIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGK 348
LIPIRNS GPLGTAL I NFYSFYHLITHNQ+LVTNYLQLDNLKQTFQVLKYYLMDENGK
Sbjct: 949 LIPIRNSSGPLGTALPIVNFYSFYHLITHNQILVTNYLQLDNLKQTFQVLKYYLMDENGK 1008
Query: 347 IYNPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 168
YNPDPCSNI LNPFNLNW+FLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI
Sbjct: 1009 FYNPDPCSNIILNPFNLNWHFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 1068
Query: 167 VQIDSLVIRSAKPYLATP 114
VQ+DS+VIRSAKPYLATP
Sbjct: 1069 VQVDSVVIRSAKPYLATP 1086
>gb|AEM44882.1| RNA polymerase beta chain, partial [Hydrangea sp. DES-2011]
Length = 495
Score = 591 bits (1524), Expect = e-166
Identities = 290/316 (91%), Positives = 303/316 (95%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFPPDL+QE DNVQL+VVNYILYGNG PIRGISDTSIQLVRTCLV+NWGQDKKSSSIEEA
Sbjct: 22 LFPPDLVQERDNVQLQVVNYILYGNGNPIRGISDTSIQLVRTCLVVNWGQDKKSSSIEEA 81
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVEIR NGLI+DFL+I+LVKSPISYTGKRNDPSGSGLISENGSDRTNINPFS IYSK
Sbjct: 82 HASFVEIRTNGLIQDFLKINLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSFIYSK 141
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
A+IQQSLNQNQGTIHTLLNRNKECQSL+ILSSSNC +MGPFNDVKYHNVIKESIKKD LI
Sbjct: 142 ARIQQSLNQNQGTIHTLLNRNKECQSLLILSSSNCSRMGPFNDVKYHNVIKESIKKDHLI 201
Query: 521 PIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGKIY 342
IRNSLGPLGT+LQI+NF SF HLITHNQ+LVTNYLQLDN KQTFQVLKYYLMDENGKIY
Sbjct: 202 TIRNSLGPLGTSLQIANFDSFSHLITHNQILVTNYLQLDNFKQTFQVLKYYLMDENGKIY 261
Query: 341 NPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 162
NPDPCSNI LNPFNLNWYFL HNYCEETSTIISLG FICENVCIAKNGPHLKSGQVLIVQ
Sbjct: 262 NPDPCSNIILNPFNLNWYFLDHNYCEETSTIISLGHFICENVCIAKNGPHLKSGQVLIVQ 321
Query: 161 IDSLVIRSAKPYLATP 114
IDS+VIRSAKPYLATP
Sbjct: 322 IDSVVIRSAKPYLATP 337
>gb|ABQ15065.1| RNA polymerase beta' subunit [Exbucklandia populnea]
Length = 802
Score = 585 bits (1509), Expect = e-164
Identities = 285/316 (90%), Positives = 300/316 (94%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFP DLLQE DN++LRVVNYILYGNGKPIRGI DTSIQLVRTCLVLNW QDKKSSSI EA
Sbjct: 308 LFPQDLLQERDNMKLRVVNYILYGNGKPIRGIYDTSIQLVRTCLVLNWDQDKKSSSIGEA 367
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
+ASFVE+R NGLIRDFLRIDLVKSPISYTGKRNDPSGSGLIS+NGSDRTNINPF S YSK
Sbjct: 368 YASFVEVRTNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISDNGSDRTNINPFYSTYSK 427
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
A+IQQS +QNQGTI TLLNRNKECQSLIILSSSNC +MGPFNDVKYHNVIKESIK+DPLI
Sbjct: 428 ARIQQSFSQNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFNDVKYHNVIKESIKRDPLI 487
Query: 521 PIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGKIY 342
PIRNSLGPLGTALQI+NFYSFYHLITHN++LVT YLQLDNLKQTFQVL YYLMDENG+IY
Sbjct: 488 PIRNSLGPLGTALQIANFYSFYHLITHNKILVTKYLQLDNLKQTFQVLNYYLMDENGRIY 547
Query: 341 NPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 162
NPDPCSNI N FNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ
Sbjct: 548 NPDPCSNIIFNSFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 607
Query: 161 IDSLVIRSAKPYLATP 114
+DS+VIRSAKPYLATP
Sbjct: 608 VDSVVIRSAKPYLATP 623
>gb|AHE41656.1| RNA polymerase beta' subunit (chloroplast) [Daphniphyllum oldhamii]
Length = 1392
Score = 583 bits (1504), Expect = e-164
Identities = 284/316 (89%), Positives = 299/316 (94%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFP DLLQE DN++LRVVNYILYGNGKPIRGISDT+IQLVRTCLVLNW QDKKSSSI EA
Sbjct: 798 LFPQDLLQERDNMKLRVVNYILYGNGKPIRGISDTNIQLVRTCLVLNWDQDKKSSSIGEA 857
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVE R NGLIRDFLRIDLVKSPISYTGKRNDPSG GLI+ NGSDRTNINPF S YSK
Sbjct: 858 HASFVETRTNGLIRDFLRIDLVKSPISYTGKRNDPSGLGLIANNGSDRTNINPFYSTYSK 917
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
A+IQQSL+QNQGTI TLLNRNKECQSLIILSSSNC +MGPFNDVKYHNVIKESIK+DPLI
Sbjct: 918 ARIQQSLSQNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFNDVKYHNVIKESIKRDPLI 977
Query: 521 PIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGKIY 342
PIRNS+GPLGTALQI NFYSFYHLITHNQ+LVT YLQLD LK+TFQVL YYLMDENG+IY
Sbjct: 978 PIRNSVGPLGTALQIVNFYSFYHLITHNQILVTKYLQLDKLKETFQVLNYYLMDENGRIY 1037
Query: 341 NPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 162
NPDPCSNI LNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIV+
Sbjct: 1038 NPDPCSNIILNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVR 1097
Query: 161 IDSLVIRSAKPYLATP 114
+DS+VIRSAKPYLATP
Sbjct: 1098 VDSVVIRSAKPYLATP 1113
>gb|ABD93856.1| RNA polymerase beta chain, partial (chloroplast) [Berberidopsis
beckleri]
Length = 829
Score = 582 bits (1501), Expect = e-163
Identities = 287/316 (90%), Positives = 300/316 (94%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFP DLLQE DNVQLRVVNYILYGN KPIR ISDTSIQLVRTCLVLNW QDKKSSSIEEA
Sbjct: 313 LFPQDLLQERDNVQLRVVNYILYGNSKPIRRISDTSIQLVRTCLVLNWDQDKKSSSIEEA 372
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVE++ NGLIRDFLRIDLVKSPISYTGKRNDPSGSGLIS++GSDRTNINPF SIYSK
Sbjct: 373 HASFVEVKTNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISDSGSDRTNINPFYSIYSK 432
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
A+IQQSL+QNQGTI TLLNRNKECQSLIILSSSNC +MGPFN VKYHNVIKESIKKDPLI
Sbjct: 433 ARIQQSLSQNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFNSVKYHNVIKESIKKDPLI 492
Query: 521 PIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGKIY 342
PIRN LGPLGTALQI+NFYSFYHLITHNQ+LVTNYLQLDNLKQ QVLKYYLMDENG+IY
Sbjct: 493 PIRNLLGPLGTALQIANFYSFYHLITHNQILVTNYLQLDNLKQA-QVLKYYLMDENGRIY 551
Query: 341 NPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 162
NPDPCSNI LNPFNLNWYFLHHNYCEETST +SLGQFICENVCIAKNGPHLKSGQVLIVQ
Sbjct: 552 NPDPCSNILLNPFNLNWYFLHHNYCEETSTKMSLGQFICENVCIAKNGPHLKSGQVLIVQ 611
Query: 161 IDSLVIRSAKPYLATP 114
+DS+VIR AKPYLATP
Sbjct: 612 VDSVVIRLAKPYLATP 627
>gb|ABQ15064.1| RNA polymerase beta' subunit [Daphniphyllum sp. 205-82]
Length = 793
Score = 581 bits (1498), Expect = e-163
Identities = 283/316 (89%), Positives = 298/316 (94%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFP DLLQE DN++LRVVNYILYGNGKPIRGISDT+IQLVRTCLVLNW QDKKSSSI EA
Sbjct: 333 LFPQDLLQERDNMKLRVVNYILYGNGKPIRGISDTNIQLVRTCLVLNWDQDKKSSSIGEA 392
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVE R NGLIRDFLRIDLVKSPISYTGKRNDPSG GLI+ NGSDRTNINPF S YSK
Sbjct: 393 HASFVETRTNGLIRDFLRIDLVKSPISYTGKRNDPSGLGLIANNGSDRTNINPFYSTYSK 452
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
A+IQQSL+QNQGTI TLLNRNKECQSLIILSSSNC +MGPFNDVKYHNVIKESIK+DPLI
Sbjct: 453 ARIQQSLSQNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFNDVKYHNVIKESIKRDPLI 512
Query: 521 PIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGKIY 342
PIRNS+GPLGTALQI NFYSFYHLITHNQ+LVT YLQLD LK+TFQVL YYLMDENG+IY
Sbjct: 513 PIRNSVGPLGTALQIVNFYSFYHLITHNQILVTKYLQLDKLKETFQVLNYYLMDENGRIY 572
Query: 341 NPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 162
NPDPCSNI LNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAK GPHLKSGQVLIV+
Sbjct: 573 NPDPCSNIILNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKKGPHLKSGQVLIVR 632
Query: 161 IDSLVIRSAKPYLATP 114
+DS+VIRSAKPYLATP
Sbjct: 633 VDSVVIRSAKPYLATP 648
>ref|YP_009159528.1| RpoC2 (chloroplast) [Dendropanax morbifer]
gi|883743783|gb|AKQ20718.1| RpoC2 (chloroplast)
[Dendropanax morbifer]
Length = 1387
Score = 581 bits (1497), Expect = e-163
Identities = 286/318 (89%), Positives = 300/318 (94%), Gaps = 2/318 (0%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LF PDLLQE DNVQLRVVNYILYGNGKPIRG DTSIQLVRTCLVLNW QDKKSSSIEEA
Sbjct: 793 LFFPDLLQERDNVQLRVVNYILYGNGKPIRGFYDTSIQLVRTCLVLNWVQDKKSSSIEEA 852
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSS--IY 708
SFVEIR NGLIRDFL+IDL KSPISYTGKR DPSGSGLISENGSDRTNINPFSS Y
Sbjct: 853 RTSFVEIRINGLIRDFLKIDLAKSPISYTGKRKDPSGSGLISENGSDRTNINPFSSSFFY 912
Query: 707 SKAKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDP 528
SKA+I++SLNQNQGTIHTLLNRNKECQSLIILSSSNCF+MGPFNDVKYHNVIKESI+KDP
Sbjct: 913 SKARIKESLNQNQGTIHTLLNRNKECQSLIILSSSNCFRMGPFNDVKYHNVIKESIQKDP 972
Query: 527 LIPIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGK 348
LIPIRNSLGPLGTALQI+NFYSFYHLIT+NQ+LVTNYLQLDNLKQ+FQVLKYYLMDENGK
Sbjct: 973 LIPIRNSLGPLGTALQIANFYSFYHLITYNQILVTNYLQLDNLKQSFQVLKYYLMDENGK 1032
Query: 347 IYNPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 168
IYNPD C NI LNPFNLNW+FLHHNYCEETST +SLGQFICENVCIAKNGPHLK GQVLI
Sbjct: 1033 IYNPDRCCNIILNPFNLNWFFLHHNYCEETSTTMSLGQFICENVCIAKNGPHLKPGQVLI 1092
Query: 167 VQIDSLVIRSAKPYLATP 114
VQ+DS+VIRSAKPYLATP
Sbjct: 1093 VQVDSVVIRSAKPYLATP 1110
>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis corallina]
Length = 1389
Score = 580 bits (1495), Expect = e-163
Identities = 286/316 (90%), Positives = 299/316 (94%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFP DLLQE DNVQLRVVNYILYGN KPIR ISDTSIQLVRTCLVLNW QDKKSSSIEEA
Sbjct: 796 LFPQDLLQERDNVQLRVVNYILYGNSKPIRRISDTSIQLVRTCLVLNWDQDKKSSSIEEA 855
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVE++ NGLIRDFLRIDLVKSPISYTGKRNDPSGSGLIS++GSDRTNINPF SIYSK
Sbjct: 856 HASFVEVKTNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISDSGSDRTNINPFYSIYSK 915
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
A+IQQSL+QNQGTI TLLNRNKECQSLIILSSSNC +MGPFN VKYHNVIKESIKKDPLI
Sbjct: 916 ARIQQSLSQNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFNSVKYHNVIKESIKKDPLI 975
Query: 521 PIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGKIY 342
PIRN LGPLGTALQI+NFYSFYHLITHNQ+LVTNYLQLDNLKQ QVLKYYLMDENG+IY
Sbjct: 976 PIRNLLGPLGTALQIANFYSFYHLITHNQILVTNYLQLDNLKQA-QVLKYYLMDENGRIY 1034
Query: 341 NPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 162
NPDPCSNI LNPFNLNWYFLHHNYCEETST +SLGQFICENVCIAKNGPHLKSGQVLIVQ
Sbjct: 1035 NPDPCSNILLNPFNLNWYFLHHNYCEETSTKMSLGQFICENVCIAKNGPHLKSGQVLIVQ 1094
Query: 161 IDSLVIRSAKPYLATP 114
+D +VIR AKPYLATP
Sbjct: 1095 VDYVVIRLAKPYLATP 1110
>gb|AHE41658.1| RNA polymerase beta' subunit, partial (chloroplast) [Cercidiphyllum
japonicum]
Length = 1372
Score = 579 bits (1493), Expect = e-162
Identities = 286/315 (90%), Positives = 297/315 (94%)
Frame = -1
Query: 1058 FPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEAH 879
FP DLLQE DN++LRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNW QDKKSSSI EAH
Sbjct: 781 FPQDLLQERDNMKLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSIGEAH 840
Query: 878 ASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSKA 699
ASFVE+R NGLIRDFLRIDLVKSPISYTGKRNDPSGSGLI +NGSDRTNINPF S YSKA
Sbjct: 841 ASFVEVRTNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLIYDNGSDRTNINPFYSTYSKA 900
Query: 698 KIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLIP 519
+IQQSL+QNQGTI TLLNRNKECQSLIILSSSNC +MG FNDVKYHNVIKESIK+DPLIP
Sbjct: 901 RIQQSLSQNQGTIRTLLNRNKECQSLIILSSSNCSRMGLFNDVKYHNVIKESIKRDPLIP 960
Query: 518 IRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGKIYN 339
IRNSLGPLGTALQI NFYSFYHLITHNQ+LVT YLQLDNLKQTFQVL YYLMDENG IYN
Sbjct: 961 IRNSLGPLGTALQIVNFYSFYHLITHNQILVTKYLQLDNLKQTFQVLNYYLMDENGIIYN 1020
Query: 338 PDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQI 159
PDPCSNI LNPFNLNWYFLHHN CEETSTIISLGQFICENV IAKNGPHLKSGQVLIVQ+
Sbjct: 1021 PDPCSNIILNPFNLNWYFLHHNSCEETSTIISLGQFICENVYIAKNGPHLKSGQVLIVQV 1080
Query: 158 DSLVIRSAKPYLATP 114
DS+VIRSAKPYLATP
Sbjct: 1081 DSVVIRSAKPYLATP 1095
>gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liquidambar styraciflua]
Length = 1390
Score = 578 bits (1489), Expect = e-162
Identities = 281/315 (89%), Positives = 299/315 (94%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFP DLLQE DN++LRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNW QDKKS+S EA
Sbjct: 798 LFPQDLLQERDNMKLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKKSASSGEA 857
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVE+R NGLIR+FLRI+LV+SPISYTGKRNDPSGSG IS+NGSDRTNINPF S YSK
Sbjct: 858 HASFVEVRTNGLIRNFLRINLVESPISYTGKRNDPSGSGWISDNGSDRTNINPFYSTYSK 917
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
+IQQSL+QNQGTI TLLNRNKECQSL ILSSSNC +MGPFNDVKYHNVIKESIK+DPLI
Sbjct: 918 ERIQQSLSQNQGTIRTLLNRNKECQSLRILSSSNCSRMGPFNDVKYHNVIKESIKRDPLI 977
Query: 521 PIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGKIY 342
PIRNSLGPLGTALQI+NFYSFYHLITHN++LVT YLQLDNLKQTFQVL YYLMDENG+IY
Sbjct: 978 PIRNSLGPLGTALQIANFYSFYHLITHNKILVTKYLQLDNLKQTFQVLNYYLMDENGRIY 1037
Query: 341 NPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 162
NPDPCSNI LNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ
Sbjct: 1038 NPDPCSNIILNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 1097
Query: 161 IDSLVIRSAKPYLAT 117
+DS+VIRSAKPYLAT
Sbjct: 1098 VDSVVIRSAKPYLAT 1112
>gb|ABQ15071.1| RNA polymerase beta' subunit [Liquidambar styraciflua]
Length = 830
Score = 578 bits (1489), Expect = e-162
Identities = 281/315 (89%), Positives = 299/315 (94%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFP DLLQE DN++LRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNW QDKKS+S EA
Sbjct: 331 LFPQDLLQERDNMKLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKKSASSGEA 390
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVE+R NGLIR+FLRI+LV+SPISYTGKRNDPSGSG IS+NGSDRTNINPF S YSK
Sbjct: 391 HASFVEVRTNGLIRNFLRINLVESPISYTGKRNDPSGSGWISDNGSDRTNINPFYSTYSK 450
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
+IQQSL+QNQGTI TLLNRNKECQSL ILSSSNC +MGPFNDVKYHNVIKESIK+DPLI
Sbjct: 451 ERIQQSLSQNQGTIRTLLNRNKECQSLRILSSSNCSRMGPFNDVKYHNVIKESIKRDPLI 510
Query: 521 PIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGKIY 342
PIRNSLGPLGTALQI+NFYSFYHLITHN++LVT YLQLDNLKQTFQVL YYLMDENG+IY
Sbjct: 511 PIRNSLGPLGTALQIANFYSFYHLITHNKILVTKYLQLDNLKQTFQVLNYYLMDENGRIY 570
Query: 341 NPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 162
NPDPCSNI LNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ
Sbjct: 571 NPDPCSNIILNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 630
Query: 161 IDSLVIRSAKPYLAT 117
+DS+VIRSAKPYLAT
Sbjct: 631 VDSVVIRSAKPYLAT 645
>ref|YP_009161669.1| RNA polymerase beta' subunit (chloroplast) [Fatsia japonica]
gi|902816249|gb|AKS10942.1| RNA polymerase beta' subunit
(chloroplast) [Fatsia japonica]
Length = 1387
Score = 577 bits (1488), Expect = e-162
Identities = 285/318 (89%), Positives = 299/318 (94%), Gaps = 2/318 (0%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LF PDLLQE DNVQLRVVNYILYGNGKPIRG DTSIQLVRTCLVLNW QDKKSSSIEEA
Sbjct: 793 LFFPDLLQERDNVQLRVVNYILYGNGKPIRGFYDTSIQLVRTCLVLNWVQDKKSSSIEEA 852
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSS--IY 708
SFVEIR NGLIRDFL+IDL KSPISYTGKR DPSGSGLISENGSDRTNINPFSS Y
Sbjct: 853 RTSFVEIRINGLIRDFLKIDLAKSPISYTGKRKDPSGSGLISENGSDRTNINPFSSSFFY 912
Query: 707 SKAKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDP 528
SKA+I++SLNQNQGTIHTLLNRNKECQSLIILSSSNCF+MGPFNDVKYHNVIKESI+KDP
Sbjct: 913 SKARIKESLNQNQGTIHTLLNRNKECQSLIILSSSNCFRMGPFNDVKYHNVIKESIQKDP 972
Query: 527 LIPIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGK 348
LIPIRNSLGPLGTALQI+NFYSF HLIT+NQ+LVTNYLQLDNLKQ+FQVLKYYLMDENGK
Sbjct: 973 LIPIRNSLGPLGTALQIANFYSFSHLITYNQILVTNYLQLDNLKQSFQVLKYYLMDENGK 1032
Query: 347 IYNPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 168
IYNPD C NI LNPFNLNW+FLHHNYCEETST +SLGQFICENVCIAKNGPHLK GQVLI
Sbjct: 1033 IYNPDRCCNIILNPFNLNWFFLHHNYCEETSTTMSLGQFICENVCIAKNGPHLKPGQVLI 1092
Query: 167 VQIDSLVIRSAKPYLATP 114
VQ+DS+VIRSAKPYLATP
Sbjct: 1093 VQVDSVVIRSAKPYLATP 1110
>ref|YP_009122715.1| RNA polymerase beta'' subunit (chloroplast) [Dendropanax dentiger]
gi|755571709|gb|AJK29845.1| RNA polymerase beta'' subunit
(chloroplast) [Dendropanax dentiger]
Length = 1387
Score = 577 bits (1488), Expect = e-162
Identities = 285/318 (89%), Positives = 299/318 (94%), Gaps = 2/318 (0%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LF PDLLQE DNVQLRVVNYILYGNGKPIRG DTSIQLVRTCLVLNW QDKKSSSIEEA
Sbjct: 793 LFFPDLLQERDNVQLRVVNYILYGNGKPIRGFYDTSIQLVRTCLVLNWVQDKKSSSIEEA 852
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSS--IY 708
SFVEIR NGLIRDFL+IDL KSPISYTGKR DPSGSGLISENGSDRTNINPFSS Y
Sbjct: 853 RTSFVEIRINGLIRDFLKIDLAKSPISYTGKRKDPSGSGLISENGSDRTNINPFSSSFFY 912
Query: 707 SKAKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDP 528
SKA+I++SLNQNQGTIHTLLNRNKECQSLIILSSSNCF+MGPFNDVK HNVIKESI+KDP
Sbjct: 913 SKARIKESLNQNQGTIHTLLNRNKECQSLIILSSSNCFRMGPFNDVKCHNVIKESIQKDP 972
Query: 527 LIPIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGK 348
LIPIRNSLGPLGTALQI+NFYSFYHLIT+NQ+LVTNYLQLDNLKQ+FQVLKYYLMDENGK
Sbjct: 973 LIPIRNSLGPLGTALQIANFYSFYHLITYNQILVTNYLQLDNLKQSFQVLKYYLMDENGK 1032
Query: 347 IYNPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 168
IYNPD C NI LNPFNLNW+FLHHNYCEETST +SLGQFICENVCIAKNGPHLK GQVLI
Sbjct: 1033 IYNPDRCCNIILNPFNLNWFFLHHNYCEETSTTMSLGQFICENVCIAKNGPHLKPGQVLI 1092
Query: 167 VQIDSLVIRSAKPYLATP 114
VQ+DS+VIRSAKPYLATP
Sbjct: 1093 VQVDSVVIRSAKPYLATP 1110
>ref|YP_004935542.1| RNA polymerase beta'' subunit (chloroplast) [Eleutherococcus
senticosus] gi|347448196|gb|AEO92608.1| RNA polymerase
beta'' subunit (chloroplast) [Eleutherococcus senticosus]
Length = 1387
Score = 577 bits (1488), Expect = e-162
Identities = 285/318 (89%), Positives = 299/318 (94%), Gaps = 2/318 (0%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LF PDLLQE DNVQLRVVNYILYGNGKPIRG DTSIQLVRTCLVLNW QDKKSSSIEEA
Sbjct: 793 LFFPDLLQERDNVQLRVVNYILYGNGKPIRGFYDTSIQLVRTCLVLNWVQDKKSSSIEEA 852
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSS--IY 708
SFVEIR NGLIRDFL+IDL KSPISYTGKR DPSGSGLISENGSDRTNINPFSS Y
Sbjct: 853 RTSFVEIRINGLIRDFLKIDLAKSPISYTGKRKDPSGSGLISENGSDRTNINPFSSSFFY 912
Query: 707 SKAKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDP 528
SKA+I++SLNQNQGTIHTLLNRNKECQSLIILSSSNCF+MGPFNDVKYHNVIKESI+KDP
Sbjct: 913 SKARIKESLNQNQGTIHTLLNRNKECQSLIILSSSNCFRMGPFNDVKYHNVIKESIQKDP 972
Query: 527 LIPIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGK 348
LIPIRNSLGPLGTALQI+NFYSF HLIT+NQ+LVTNYLQLDNLKQ+FQVLKYYLMDENGK
Sbjct: 973 LIPIRNSLGPLGTALQIANFYSFSHLITYNQILVTNYLQLDNLKQSFQVLKYYLMDENGK 1032
Query: 347 IYNPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 168
IYNPD C NI LNPFNLNW+FLHHNYCEETST +SLGQFICENVCIAKNGPHLK GQVLI
Sbjct: 1033 IYNPDRCCNIILNPFNLNWFFLHHNYCEETSTTMSLGQFICENVCIAKNGPHLKPGQVLI 1092
Query: 167 VQIDSLVIRSAKPYLATP 114
VQ+DS+VIRSAKPYLATP
Sbjct: 1093 VQVDSVVIRSAKPYLATP 1110
>ref|YP_008963681.1| RNA polymerase beta' subunit (chloroplast) [Liquidambar formosana]
gi|491650361|gb|AGL13421.1| RNA polymerase beta' subunit
(chloroplast) [Liquidambar formosana]
Length = 1390
Score = 577 bits (1486), Expect = e-162
Identities = 279/315 (88%), Positives = 298/315 (94%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFP DLLQE DN++LRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNW QDKKS+S EA
Sbjct: 798 LFPQDLLQERDNMKLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKKSASSGEA 857
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVE+R NGLIR+FLRI+L +SPISYTGKRNDPSGSG IS+NGSDRTNINPF S YSK
Sbjct: 858 HASFVEVRTNGLIRNFLRINLAESPISYTGKRNDPSGSGWISDNGSDRTNINPFYSTYSK 917
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDPLI 522
+IQQSL+QNQGTI TLLNRNKECQSLIILSSSNC +MGPFNDVKYHNVIKESIK+DPLI
Sbjct: 918 ERIQQSLSQNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFNDVKYHNVIKESIKRDPLI 977
Query: 521 PIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGKIY 342
PIRNSLGPLGTALQI+NFYSFYHLITHN++LVT YLQLDNLKQTFQVL YYLMDENG+IY
Sbjct: 978 PIRNSLGPLGTALQIANFYSFYHLITHNKILVTKYLQLDNLKQTFQVLNYYLMDENGRIY 1037
Query: 341 NPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLIVQ 162
NPDPCSNI LNPFNLNWYFLHHNYCEETSTIISLGQF+CENVCIAKNGPHLK GQVLIVQ
Sbjct: 1038 NPDPCSNIILNPFNLNWYFLHHNYCEETSTIISLGQFVCENVCIAKNGPHLKPGQVLIVQ 1097
Query: 161 IDSLVIRSAKPYLAT 117
+DS+VIRSAKPYLAT
Sbjct: 1098 VDSVVIRSAKPYLAT 1112
>gb|AEM44881.1| RNA polymerase beta chain, partial [Petalonyx parryi]
Length = 515
Score = 576 bits (1485), Expect = e-161
Identities = 289/318 (90%), Positives = 300/318 (94%), Gaps = 2/318 (0%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFPPDLLQE DNVQL+VVNYILYGNGKPIRGISDTSIQLVRTCLVLNW QDKKSSSIEEA
Sbjct: 43 LFPPDLLQERDNVQLQVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSIEEA 102
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSIYSK 702
HASFVEIR NGLIR+FL+I L+KSPISYTGKRNDPSGSGLISENGSD TNINPFS IYSK
Sbjct: 103 HASFVEIRTNGLIRNFLKIHLMKSPISYTGKRNDPSGSGLISENGSDCTNINPFSFIYSK 162
Query: 701 AKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESI--KKDP 528
A+IQQSL QNQGTIHTLLNRNKE QSLIILSSSNC +MGPFNDVKYHNVIKESI KKD
Sbjct: 163 ARIQQSLKQNQGTIHTLLNRNKEFQSLIILSSSNCSRMGPFNDVKYHNVIKESIQNKKDH 222
Query: 527 LIPIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGK 348
LI RNSLGPLGT+L I+NFYSF HLITHNQ+LVTNYLQLDNLKQTF+VLKYYLMDENGK
Sbjct: 223 LI--RNSLGPLGTSLPIANFYSFSHLITHNQILVTNYLQLDNLKQTFEVLKYYLMDENGK 280
Query: 347 IYNPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 168
YNPDPCSNI LNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI
Sbjct: 281 FYNPDPCSNIILNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 340
Query: 167 VQIDSLVIRSAKPYLATP 114
VQIDS+VIRSAKPYLATP
Sbjct: 341 VQIDSVVIRSAKPYLATP 358
>gb|AII18683.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum tinus]
Length = 1384
Score = 576 bits (1484), Expect = e-161
Identities = 288/318 (90%), Positives = 299/318 (94%), Gaps = 2/318 (0%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNW QDKKSSSIEEA
Sbjct: 796 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSIEEA 855
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSI--Y 708
ASFVEIR NGLIRDFLRI L KSPISYTGKRNDPSGSG ISENGSDRTNINPFSSI Y
Sbjct: 856 RASFVEIRTNGLIRDFLRIHLAKSPISYTGKRNDPSGSGWISENGSDRTNINPFSSIFSY 915
Query: 707 SKAKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDP 528
SKA+IQ+SLNQNQGTIHTLLNRNKECQSLIILSSSNC QMGPFNDVKYHNVIKESI+KDP
Sbjct: 916 SKARIQESLNQNQGTIHTLLNRNKECQSLIILSSSNCSQMGPFNDVKYHNVIKESIQKDP 975
Query: 527 LIPIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGK 348
L+ NSLGPLGTALQ++NFYSF HLITHNQ+LVTN+ DNLKQTFQVLK YLMDENGK
Sbjct: 976 LM---NSLGPLGTALQLANFYSFSHLITHNQILVTNF---DNLKQTFQVLKSYLMDENGK 1029
Query: 347 IYNPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 168
IYNPDPCSNI LNPFNLNWYFLHHNYCEETST+ISLGQFICENVCIAKNGPH KSGQVLI
Sbjct: 1030 IYNPDPCSNIVLNPFNLNWYFLHHNYCEETSTLISLGQFICENVCIAKNGPHFKSGQVLI 1089
Query: 167 VQIDSLVIRSAKPYLATP 114
VQ+DS+VIRSAKPYLATP
Sbjct: 1090 VQVDSVVIRSAKPYLATP 1107
>gb|AII18680.1| RNA polymerase beta' subunit, partial (chloroplast) [Viburnum
punctatum]
Length = 1413
Score = 576 bits (1484), Expect = e-161
Identities = 288/318 (90%), Positives = 298/318 (93%), Gaps = 2/318 (0%)
Frame = -1
Query: 1061 LFPPDLLQEGDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWGQDKKSSSIEEA 882
LFPPDLL E DNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNW QDKKSSSIEEA
Sbjct: 825 LFPPDLLHERDNVQLRVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSIEEA 884
Query: 881 HASFVEIRKNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISENGSDRTNINPFSSI--Y 708
ASFVEIR NGLIRDFLRI L KSPISYTGKRNDPSGSG ISENGSDRTNINPFSSI Y
Sbjct: 885 RASFVEIRTNGLIRDFLRIHLAKSPISYTGKRNDPSGSGWISENGSDRTNINPFSSIFSY 944
Query: 707 SKAKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCFQMGPFNDVKYHNVIKESIKKDP 528
SKA+IQ+SLNQNQGTIHTLLNRNKECQSLIILSSSNC QMGPFNDVKYHNVIKESIKKDP
Sbjct: 945 SKARIQESLNQNQGTIHTLLNRNKECQSLIILSSSNCSQMGPFNDVKYHNVIKESIKKDP 1004
Query: 527 LIPIRNSLGPLGTALQISNFYSFYHLITHNQLLVTNYLQLDNLKQTFQVLKYYLMDENGK 348
L+ NSLGPLGTALQ++NFYSF HLITHNQ+LVTN+ DNLKQTFQVLKYYLMDENGK
Sbjct: 1005 LM---NSLGPLGTALQLANFYSFSHLITHNQILVTNF---DNLKQTFQVLKYYLMDENGK 1058
Query: 347 IYNPDPCSNIFLNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKNGPHLKSGQVLI 168
IYNPDPCSNI LNPFNLNWYFLHHNYCEETST+ISLGQFICENVCIAKNGPH KSGQVLI
Sbjct: 1059 IYNPDPCSNIVLNPFNLNWYFLHHNYCEETSTLISLGQFICENVCIAKNGPHFKSGQVLI 1118
Query: 167 VQIDSLVIRSAKPYLATP 114
VQ+DS+VIRSAKPYLATP
Sbjct: 1119 VQVDSVVIRSAKPYLATP 1136