BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00027471
         (331 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ALM62247.1| RNA-dependent RNA polymerase, partial [Soybean-as...   119   1e-24
gb|AFX73022.1| RNA dependent RNA polymerase [Grapevine partitivi...   109   9e-22
ref|YP_003082248.1| RNA-dependent RNA polymerase [Sclerotinia sc...    74   6e-11
dbj|BAH08700.1| putative RNA-dependent RNA polymerase [Flammulin...    69   1e-09
dbj|BAT32942.1| RNA-dependent RNA Polymerase [Rosellinia necatri...    62   1e-07
dbj|BAQ36631.1| RNA-dependent RNA polymerase [Fusarium solani pa...    56   9e-06

>gb|ALM62247.1| RNA-dependent RNA polymerase, partial [Soybean-associated
           partitivirus 2]
          Length = 602

 Score =  119 bits (297), Expect = 1e-24
 Identities = 62/101 (61%), Positives = 73/101 (72%)
 Frame = -1

Query: 310 FLSKMSSEAKRRFNADLSVEKTSSGTSTNDVEVLHYGNTSGLATRSPAELLAHLLYPERP 131
           FL K++ EAK RFNA LSV+KTS GTS NDVEVL Y N  G+ATR PAELL+ LLYPER 
Sbjct: 434 FLQKLAKEAKIRFNAILSVDKTSHGTSLNDVEVLSYRNNQGIATREPAELLSKLLYPERA 493

Query: 130 RRLPETXXXXXXXXXASMGCSRQVYNTCSDVYFFLVNSLNI 8
           +RL  T         A+MG SRQVYNTC +VY F+VN L++
Sbjct: 494 KRLGGTAASAIGIAMAAMGSSRQVYNTCKNVYDFIVNELHV 534


>gb|AFX73022.1| RNA dependent RNA polymerase [Grapevine partitivirus]
          Length = 584

 Score =  109 bits (272), Expect = 9e-22
 Identities = 56/107 (52%), Positives = 70/107 (65%)
 Frame = -1

Query: 322 DLPLFLSKMSSEAKRRFNADLSVEKTSSGTSTNDVEVLHYGNTSGLATRSPAELLAHLLY 143
           + P+FL  + + AKRRFNA+LSV+KT+ G S N V+VL Y N  G+A R  AELLAHLLY
Sbjct: 413 EFPIFLKDLETIAKRRFNANLSVDKTAIGDSLNSVDVLSYSNVQGIAFRDEAELLAHLLY 472

Query: 142 PERPRRLPETXXXXXXXXXASMGCSRQVYNTCSDVYFFLVNSLNIIP 2
           PE+ + L  T         ASMGCS+ VY+ C D Y FL NS +I P
Sbjct: 473 PEKFQTLEATASCCIGIAYASMGCSKVVYDVCHDAYSFLTNSFHIDP 519


>ref|YP_003082248.1| RNA-dependent RNA polymerase [Sclerotinia sclerotiorum partitivirus
           S] gi|254034306|gb|ACT55329.1| RNA-dependent RNA
           polymerase [Sclerotinia sclerotiorum partitivirus S]
          Length = 580

 Score = 73.6 bits (179), Expect = 6e-11
 Identities = 40/99 (40%), Positives = 56/99 (56%)
 Frame = -1

Query: 310 FLSKMSSEAKRRFNADLSVEKTSSGTSTNDVEVLHYGNTSGLATRSPAELLAHLLYPERP 131
           +L  ++  A   FNA LSV+K+    +     VL Y N  G+  R   +LL+HL++PERP
Sbjct: 414 YLDTLADLASYYFNAKLSVKKSFISDTPQGQYVLGYFNHYGIPYRLDDDLLSHLVFPERP 473

Query: 130 RRLPETXXXXXXXXXASMGCSRQVYNTCSDVYFFLVNSL 14
           +RL ET         ASMGCS+ VY+ C D Y F+  +L
Sbjct: 474 QRLEETAASCVGIAMASMGCSKVVYSICDDAYTFITKTL 512


>dbj|BAH08700.1| putative RNA-dependent RNA polymerase [Flammulina velutipes
           isometric virus]
          Length = 587

 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 37/103 (35%), Positives = 56/103 (54%)
 Frame = -1

Query: 310 FLSKMSSEAKRRFNADLSVEKTSSGTSTNDVEVLHYGNTSGLATRSPAELLAHLLYPERP 131
           FL  +++ A   FNA L+V+K+    +TN ++VL Y N  G   R+  +LL+HL +PER 
Sbjct: 417 FLDMIANNAMYYFNAKLNVDKSEINWNTNGMKVLGYPNDYGTPRRTDQDLLSHLFFPERI 476

Query: 130 RRLPETXXXXXXXXXASMGCSRQVYNTCSDVYFFLVNSLNIIP 2
             LP           AS G + +VY  C D++ FL N  ++ P
Sbjct: 477 YSLPSLASTCIGIAYASCGSNPKVYAICQDIFLFLRNVFDVAP 519


>dbj|BAT32942.1| RNA-dependent RNA Polymerase [Rosellinia necatrix partitivirus 7]
          Length = 608

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 35/101 (34%), Positives = 54/101 (53%)
 Frame = -1

Query: 310 FLSKMSSEAKRRFNADLSVEKTSSGTSTNDVEVLHYGNTSGLATRSPAELLAHLLYPERP 131
           FL   S+ A++ FNA L+V+K+S     +   VL Y N  G A R+  +LL HL++PERP
Sbjct: 440 FLIMFSAVAEKYFNAKLNVKKSSILGQAHMATVLSYPNWHGTAFRTDEDLLRHLMFPERP 499

Query: 130 RRLPETXXXXXXXXXASMGCSRQVYNTCSDVYFFLVNSLNI 8
           + L            A++GCS + +N C  ++  LV    +
Sbjct: 500 QDLGRLAASAIGLAQAALGCSERFHNLCEYIFTKLVKGKGV 540


>dbj|BAQ36631.1| RNA-dependent RNA polymerase [Fusarium solani partitivirus 2]
          Length = 608

 Score = 56.2 bits (134), Expect = 9e-06
 Identities = 33/98 (33%), Positives = 50/98 (51%)
 Frame = -1

Query: 316 PLFLSKMSSEAKRRFNADLSVEKTSSGTSTNDVEVLHYGNTSGLATRSPAELLAHLLYPE 137
           P FL+ +   +   FNA LSV+K+      N + VL + N  GL  R+  +LL HL +PE
Sbjct: 438 PNFLTMLGDASAFYFNAKLSVKKSQISDHLNGMSVLSFFNDFGLPYRTEEDLLRHLFFPE 497

Query: 136 RPRRLPETXXXXXXXXXASMGCSRQVYNTCSDVYFFLV 23
           R + L  T         A+ GCS + ++ C  ++  LV
Sbjct: 498 RNQDLARTASAAMGLAYAASGCSPRFHSLCEYIWNKLV 535