BLASTX nr result

ID: Cornus23_contig00026688 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00026688
         (403 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009049788.1| hypothetical protein (mitochondrion) [Capsic...   110   3e-22
ref|YP_009045731.1| orf148b (mitochondrion) [Batis maritima] gi|...    99   4e-20
ref|NP_064047.1| orf169 gene product (mitochondrion) [Beta vulga...    89   1e-15
emb|CBJ23345.1| hypothetical protein [Beta vulgaris subsp. marit...    87   5e-15
gb|AHI16402.1| nad6, partial (mitochondrion) [Triticum turgidum ...    82   1e-13
gb|AGI48801.1| NADH dehydrogenase subunit 6 (mitochondrion) [Lol...    82   1e-13
ref|YP_398421.1| nad6 (mitochondrion) [Triticum aestivum] gi|556...    82   1e-13
gb|ADE08099.1| nad6-1 (mitochondrion) [Triticum aestivum] gi|291...    82   1e-13
ref|YP_002608398.1| NADH dehydrogenase subunit 6 [Vitis vinifera...    81   3e-13
ref|XP_006364255.1| PREDICTED: LOW QUALITY PROTEIN: NADH-ubiquin...    79   2e-12
sp|P60497.1|NU6M_ARATH RecName: Full=NADH-ubiquinone oxidoreduct...    72   2e-10
ref|YP_717162.1| NADH dehydrogenase subunit 6 [Brassica napus] g...    72   2e-10
gb|ABC18241.1| NADH dehydrogenase subunit 6 [Brassica oleracea v...    72   2e-10
gb|AHC94298.1| NADH dehydrogenase subunit 6, partial (mitochondr...    72   2e-10
gb|AHA47115.1| NADH dehydrogenase subunit 6 (mitochondrion) [Amb...    72   2e-10
ref|YP_005090490.1| NADH dehydrogenase subunit 6 (mitochondrion)...    72   2e-10
ref|YP_005090449.1| NADH dehydrogenase subunit 6 (mitochondrion)...    72   2e-10
ref|YP_588429.1| NADH dehydrogenase subunit 6 (mitochondrion) [Z...    72   2e-10
gb|AAF86489.1|AF279442_1 NADH dehydrogenase subunit 6 [Lupinus l...    72   2e-10
gb|EPS74656.1| hypothetical protein M569_00092, partial [Genlise...    70   5e-10

>ref|YP_009049788.1| hypothetical protein (mitochondrion) [Capsicum annuum]
           gi|667751745|gb|AIG89832.1| hypothetical protein
           (mitochondrion) [Capsicum annuum]
           gi|667752060|gb|AIG90146.1| hypothetical protein
           (mitochondrion) [Capsicum annuum]
          Length = 117

 Score =  110 bits (276), Expect = 3e-22
 Identities = 49/55 (89%), Positives = 51/55 (92%)
 Frame = -3

Query: 221 MKVPFQGRTTYHDTFCFVEPCFGLWFDGCTC*KSGTFRFVFHPSLLRHFRFTSFV 57
           MKVPFQGRTTY+DTF FVEPCFGLWFDGCTC KSGTFRFV HPSL +HFRFTSFV
Sbjct: 1   MKVPFQGRTTYYDTFRFVEPCFGLWFDGCTCKKSGTFRFVSHPSLSQHFRFTSFV 55


>ref|YP_009045731.1| orf148b (mitochondrion) [Batis maritima]
           gi|655168505|gb|AIC83334.1| orf148b (mitochondrion)
           [Batis maritima]
          Length = 148

 Score = 98.6 bits (244), Expect(2) = 4e-20
 Identities = 53/71 (74%), Positives = 53/71 (74%), Gaps = 3/71 (4%)
 Frame = +3

Query: 96  MKNKTECTGFLARTTIKPETKARLDKTESIMVRRPSLKWNFHAGARTRMKVDLLQPARLF 275
           M NKTECTGFLAR TIKPETKA LDKTESIMVRRPSLKWNFHA ART MKVDL       
Sbjct: 1   MGNKTECTGFLARATIKPETKAGLDKTESIMVRRPSLKWNFHAEARTSMKVDLFITTSAV 60

Query: 276 V---FHFILPS 299
           V   F F  PS
Sbjct: 61  VRLSFSFSKPS 71



 Score = 26.2 bits (56), Expect(2) = 4e-20
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 367 FLCVQVDQRFG 399
           FLC QVDQRFG
Sbjct: 93  FLCAQVDQRFG 103


>ref|NP_064047.1| orf169 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|323435071|ref|YP_004222289.1| hypothetical protein
           BevumaM_p051 [Beta vulgaris subsp. maritima]
           gi|346683271|ref|YP_004842203.1| hypothetical protein
           BemaM_p159 [Beta macrocarpa] gi|9049347|dbj|BAA99357.1|
           orf169 (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|317905724|emb|CBJ14109.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|319439804|emb|CBJ17516.1|
           hypothetical protein [Beta vulgaris subsp. maritima]
           gi|345500189|emb|CBX25008.1| hypothetical protein [Beta
           macrocarpa] gi|384939187|emb|CBL52034.1| hypothetical
           protein (mitochondrion) [Beta vulgaris subsp. maritima]
          Length = 169

 Score = 89.4 bits (220), Expect = 1e-15
 Identities = 54/93 (58%), Positives = 59/93 (63%), Gaps = 7/93 (7%)
 Frame = +2

Query: 113 MYRIFSTYNHQTRDQSKARQNRKYHGTSSFPEMELSCW---SKNSHESRSITTSAVVRIS 283
           MYRIFSTYNHQTRDQS+ARQNRKYHGTSSF EMELSCW     +       TTSAVV IS
Sbjct: 1   MYRIFSTYNHQTRDQSRARQNRKYHGTSSFTEMELSCWFGVRTSMKVDLLRTTSAVVHIS 60

Query: 284 FYXXXXXXXXXALTELLTESQI----SLDAENF 370
           F          +   LL E  +    SLDA+NF
Sbjct: 61  F--------PSSKQALLGEHSLSYLRSLDADNF 85


>emb|CBJ23345.1| hypothetical protein [Beta vulgaris subsp. maritima]
          Length = 169

 Score = 87.0 bits (214), Expect = 5e-15
 Identities = 53/93 (56%), Positives = 58/93 (62%), Gaps = 7/93 (7%)
 Frame = +2

Query: 113 MYRIFSTYNHQTRDQSKARQNRKYHGTSSFPEMELSCW---SKNSHESRSITTSAVVRIS 283
           MYRI STYNHQTRDQS+ARQNRKYHGTSSF EMELSCW     +       TTSAVV IS
Sbjct: 1   MYRILSTYNHQTRDQSRARQNRKYHGTSSFTEMELSCWFGVRTSMKVDLLRTTSAVVHIS 60

Query: 284 FYXXXXXXXXXALTELLTESQI----SLDAENF 370
           F          +   LL E  +    SLDA+NF
Sbjct: 61  F--------PSSKQALLGEHSLSYLRSLDADNF 85


>gb|AHI16402.1| nad6, partial (mitochondrion) [Triticum turgidum subsp. durum]
          Length = 230

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 49/80 (61%), Positives = 52/80 (65%)
 Frame = -1

Query: 241 MRVLAPA*KFHFREGRRTMIXXXXXXXXXXXXXXXVRAKNPVHSVLFFILVFCDTSXXXX 62
           MR+LAPA KFHF+ GRRTMI               VRAKNPVHSVLF ILVFCDTS    
Sbjct: 1   MRLLAPAFKFHFKGGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLI 60

Query: 61  XXXLDFFAMIFLVVYIGAIA 2
              LDF AMI  VV+IGAIA
Sbjct: 61  LLGLDFSAMISPVVHIGAIA 80


>gb|AGI48801.1| NADH dehydrogenase subunit 6 (mitochondrion) [Lolium perenne]
          Length = 314

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 49/80 (61%), Positives = 52/80 (65%)
 Frame = -1

Query: 241 MRVLAPA*KFHFREGRRTMIXXXXXXXXXXXXXXXVRAKNPVHSVLFFILVFCDTSXXXX 62
           MR+LAPA KFHF+ GRRTMI               VRAKNPVHSVLF ILVFCDTS    
Sbjct: 1   MRLLAPAFKFHFKGGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLI 60

Query: 61  XXXLDFFAMIFLVVYIGAIA 2
              LDF AMI  VV+IGAIA
Sbjct: 61  LLGLDFSAMISPVVHIGAIA 80


>ref|YP_398421.1| nad6 (mitochondrion) [Triticum aestivum]
           gi|556927002|ref|YP_008757360.1| NADH dehydrogenase
           subunit 6 (mitochondrion) [Aegilops speltoides]
           gi|556927209|ref|YP_008758166.1| NADH dehydrogenase
           subunit 6 (mitochondrion) [Triticum timopheevii]
           gi|400642|sp|Q02500.1|NU6M_WHEAT RecName:
           Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
           gi|21826|emb|CAA44009.1| NADH dehydrogenase (ubiquinone)
           (mitochondrion) [Triticum aestivum]
           gi|78675261|dbj|BAE47686.1| nad6 (mitochondrion)
           [Triticum aestivum] gi|169649070|gb|ACA62631.1| nad6
           (mitochondrion) [Triticum aestivum]
           gi|549067756|dbj|BAN94728.1| NADH dehydrogenase subunit
           6 (mitochondrion) [Triticum timopheevii]
           gi|549067766|dbj|BAN94737.1| NADH dehydrogenase subunit
           6 (mitochondrion) [Aegilops speltoides]
           gi|578888268|gb|AHI16372.1| nad6 (mitochondrion)
           [Triticum turgidum subsp. durum]
          Length = 247

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 49/80 (61%), Positives = 52/80 (65%)
 Frame = -1

Query: 241 MRVLAPA*KFHFREGRRTMIXXXXXXXXXXXXXXXVRAKNPVHSVLFFILVFCDTSXXXX 62
           MR+LAPA KFHF+ GRRTMI               VRAKNPVHSVLF ILVFCDTS    
Sbjct: 1   MRLLAPAFKFHFKGGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLI 60

Query: 61  XXXLDFFAMIFLVVYIGAIA 2
              LDF AMI  VV+IGAIA
Sbjct: 61  LLGLDFSAMISPVVHIGAIA 80


>gb|ADE08099.1| nad6-1 (mitochondrion) [Triticum aestivum]
           gi|291498626|gb|ADE08100.1| nad6-2 (mitochondrion)
           [Triticum aestivum]
          Length = 305

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 49/80 (61%), Positives = 52/80 (65%)
 Frame = -1

Query: 241 MRVLAPA*KFHFREGRRTMIXXXXXXXXXXXXXXXVRAKNPVHSVLFFILVFCDTSXXXX 62
           MR+LAPA KFHF+ GRRTMI               VRAKNPVHSVLF ILVFCDTS    
Sbjct: 1   MRLLAPAFKFHFKGGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLI 60

Query: 61  XXXLDFFAMIFLVVYIGAIA 2
              LDF AMI  VV+IGAIA
Sbjct: 61  LLGLDFSAMISPVVHIGAIA 80


>ref|YP_002608398.1| NADH dehydrogenase subunit 6 [Vitis vinifera]
           gi|209954195|emb|CAQ77660.1| NADH dehydrogenase subunit
           6 [Vitis vinifera] gi|239764731|gb|ACS15202.1| NADH
           dehydrogenase subunit 6 [Vitis vinifera]
          Length = 223

 Score = 81.3 bits (199), Expect = 3e-13
 Identities = 49/80 (61%), Positives = 51/80 (63%)
 Frame = -1

Query: 241 MRVLAPA*KFHFREGRRTMIXXXXXXXXXXXXXXXVRAKNPVHSVLFFILVFCDTSXXXX 62
           MRVLAPA KFHFREGRRTMI                RAKNPVHSVLF I VF +TS    
Sbjct: 1   MRVLAPALKFHFREGRRTMILSVSSSPALVSGLMVARAKNPVHSVLFPIPVFRNTSGLLL 60

Query: 61  XXXLDFFAMIFLVVYIGAIA 2
              LDF AMIF VV+IGAIA
Sbjct: 61  LLGLDFSAMIFPVVHIGAIA 80


>ref|XP_006364255.1| PREDICTED: LOW QUALITY PROTEIN: NADH-ubiquinone oxidoreductase
           chain 6-like [Solanum tuberosum]
          Length = 349

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 48/80 (60%), Positives = 49/80 (61%)
 Frame = -1

Query: 241 MRVLAPA*KFHFREGRRTMIXXXXXXXXXXXXXXXVRAKNPVHSVLFFILVFCDTSXXXX 62
           M  LAPA KFHFREGRRTMI               VRA NPVHSV F I VF +TS    
Sbjct: 1   MLFLAPAXKFHFREGRRTMILSILSRPALVSGLMVVRAXNPVHSVCFXIPVFRNTSGLLL 60

Query: 61  XXXLDFFAMIFLVVYIGAIA 2
              LDFFAMIF VVYIGAIA
Sbjct: 61  LLGLDFFAMIFPVVYIGAIA 80


>sp|P60497.1|NU6M_ARATH RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:
           Full=NADH dehydrogenase subunit 6
          Length = 205

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 37/44 (84%), Positives = 37/44 (84%)
 Frame = -1

Query: 133 RAKNPVHSVLFFILVFCDTSXXXXXXXLDFFAMIFLVVYIGAIA 2
           RAKNPVHSVLFFILVFCDTS       LDFFAMIFLVVYIGAIA
Sbjct: 19  RAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIA 62


>ref|YP_717162.1| NADH dehydrogenase subunit 6 [Brassica napus]
           gi|37591109|dbj|BAC98911.1| NADH dehydrogenase subunit 6
           [Brassica napus]
          Length = 205

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 37/44 (84%), Positives = 37/44 (84%)
 Frame = -1

Query: 133 RAKNPVHSVLFFILVFCDTSXXXXXXXLDFFAMIFLVVYIGAIA 2
           RAKNPVHSVLFFILVFCDTS       LDFFAMIFLVVYIGAIA
Sbjct: 19  RAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIA 62


>gb|ABC18241.1| NADH dehydrogenase subunit 6 [Brassica oleracea var. botrytis]
          Length = 201

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 37/44 (84%), Positives = 37/44 (84%)
 Frame = -1

Query: 133 RAKNPVHSVLFFILVFCDTSXXXXXXXLDFFAMIFLVVYIGAIA 2
           RAKNPVHSVLFFILVFCDTS       LDFFAMIFLVVYIGAIA
Sbjct: 19  RAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIA 62


>gb|AHC94298.1| NADH dehydrogenase subunit 6, partial (mitochondrion) [Amborella
           trichopoda]
          Length = 178

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 37/44 (84%), Positives = 37/44 (84%)
 Frame = -1

Query: 133 RAKNPVHSVLFFILVFCDTSXXXXXXXLDFFAMIFLVVYIGAIA 2
           RAKNPVHSVLFFILVFCDTS       LDFFAMIFLVVYIGAIA
Sbjct: 11  RAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIA 54


>gb|AHA47115.1| NADH dehydrogenase subunit 6 (mitochondrion) [Amborella trichopoda]
          Length = 209

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 37/44 (84%), Positives = 37/44 (84%)
 Frame = -1

Query: 133 RAKNPVHSVLFFILVFCDTSXXXXXXXLDFFAMIFLVVYIGAIA 2
           RAKNPVHSVLFFILVFCDTS       LDFFAMIFLVVYIGAIA
Sbjct: 19  RAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIA 62


>ref|YP_005090490.1| NADH dehydrogenase subunit 6 (mitochondrion) [Lotus japonicus]
           gi|357197354|gb|AET62950.1| NADH dehydrogenase subunit 6
           (mitochondrion) [Lotus japonicus]
          Length = 205

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 37/44 (84%), Positives = 37/44 (84%)
 Frame = -1

Query: 133 RAKNPVHSVLFFILVFCDTSXXXXXXXLDFFAMIFLVVYIGAIA 2
           RAKNPVHSVLFFILVFCDTS       LDFFAMIFLVVYIGAIA
Sbjct: 19  RAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIA 62


>ref|YP_005090449.1| NADH dehydrogenase subunit 6 (mitochondrion) [Millettia pinnata]
           gi|357197312|gb|AET62909.1| NADH dehydrogenase subunit 6
           (mitochondrion) [Millettia pinnata]
          Length = 205

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 37/44 (84%), Positives = 37/44 (84%)
 Frame = -1

Query: 133 RAKNPVHSVLFFILVFCDTSXXXXXXXLDFFAMIFLVVYIGAIA 2
           RAKNPVHSVLFFILVFCDTS       LDFFAMIFLVVYIGAIA
Sbjct: 19  RAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIA 62


>ref|YP_588429.1| NADH dehydrogenase subunit 6 (mitochondrion) [Zea mays subsp. mays]
           gi|40795022|gb|AAR91066.1| NADH dehydrogenase subunit 6
           (mitochondrion) [Zea mays]
          Length = 220

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 37/44 (84%), Positives = 37/44 (84%)
 Frame = -1

Query: 133 RAKNPVHSVLFFILVFCDTSXXXXXXXLDFFAMIFLVVYIGAIA 2
           RAKNPVHSVLFFILVFCDTS       LDFFAMIFLVVYIGAIA
Sbjct: 19  RAKNPVHSVLFFILVFCDTSGLLILLGLDFFAMIFLVVYIGAIA 62


>gb|AAF86489.1|AF279442_1 NADH dehydrogenase subunit 6 [Lupinus luteus]
          Length = 205

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 37/44 (84%), Positives = 37/44 (84%)
 Frame = -1

Query: 133 RAKNPVHSVLFFILVFCDTSXXXXXXXLDFFAMIFLVVYIGAIA 2
           RAKNPVHSVLFFILVFCDTS       LDFFAMIFLVVYIGAIA
Sbjct: 19  RAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIA 62


>gb|EPS74656.1| hypothetical protein M569_00092, partial [Genlisea aurea]
          Length = 214

 Score = 70.5 bits (171), Expect = 5e-10
 Identities = 43/72 (59%), Positives = 45/72 (62%)
 Frame = -1

Query: 217 KFHFREGRRTMIXXXXXXXXXXXXXXXVRAKNPVHSVLFFILVFCDTSXXXXXXXLDFFA 38
           KFHFRE  RTMI               VRAKNPVHSVLF I VF +TS       LDFFA
Sbjct: 1   KFHFREVERTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLFLGLDFFA 60

Query: 37  MIFLVVYIGAIA 2
           MIFLVV+IGAIA
Sbjct: 61  MIFLVVHIGAIA 72


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