BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00026086
         (943 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ALM62247.1| RNA-dependent RNA polymerase, partial [Soybean-as...   387   e-105
gb|AFX73022.1| RNA dependent RNA polymerase [Grapevine partitivi...   351   4e-94
ref|YP_003082248.1| RNA-dependent RNA polymerase [Sclerotinia sc...   301   5e-79
dbj|BAM36403.1| RNA-dependent RNA-polymerase [Rosellinia necatri...   259   2e-66
dbj|BAH08700.1| putative RNA-dependent RNA polymerase [Flammulin...   254   9e-65
dbj|BAQ36631.1| RNA-dependent RNA polymerase [Fusarium solani pa...   249   2e-63
dbj|BAT32942.1| RNA-dependent RNA Polymerase [Rosellinia necatri...   234   1e-58
emb|CAJ34337.1| RNA-dependent RNA polymerase, partial [Ophiostom...   223   2e-55
gb|ABJ99996.1| putative RdRp [Vicia faba partitivirus 1]              220   1e-54
dbj|BAH56481.1| RNA-dependent RNA polymerase [Flammulina velutip...   218   4e-54
ref|YP_007419077.1| RNA-dependent RNA polymerase [Rosellinia nec...   202   3e-49
ref|YP_656506.1| RNA-dependent RNA polymerase [Raphanus sativus ...   195   5e-47
gb|AAU88207.1| RNA-dependent RNA polymerase [Radish partitivirus...   193   2e-46
emb|CAQ53729.1| RNA-dependent RNA polymerase [Chondrostereum pur...   186   3e-44
gb|AHL25151.1| RNA-dependent RNA polymerase [Heterobasidion part...   164   7e-38
gb|AAP74192.1| RNA-dependent RNA polymerase [Oyster mushroom iso...   164   7e-38
gb|AHL25162.1| RNA-dependent RNA polymerase [Heterobasidion part...   161   8e-37
gb|AHL25155.1| RNA-dependent RNA polymerase [Heterobasidion part...   158   5e-36
gb|AHL25153.1| RNA-dependent RNA polymerase [Heterobasidion part...   158   5e-36
gb|ACO37245.1| putative RNA-dependent RNA polymerase [Heterobasi...   148   5e-33

>gb|ALM62247.1| RNA-dependent RNA polymerase, partial [Soybean-associated
           partitivirus 2]
          Length = 602

 Score =  387 bits (995), Expect = e-105
 Identities = 176/287 (61%), Positives = 223/287 (77%), Gaps = 1/287 (0%)
 Frame = -1

Query: 865 RLIRKAIYTHCSQELANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVV 686
           +L++KAI+  C+ ELA + I+GYRRS      AE DF K+DQPYH VPRDFHY++AL   
Sbjct: 55  KLVKKAIHMECTPELAQQAIHGYRRSKGGDAIAEEDFKKSDQPYHPVPRDFHYRKALATC 114

Query: 685 ERTFRPKRPLKPIAFPDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARLTFH 506
           ER FRP R LKPIAFPDLRY+PW L+VSAEAPYS S YW + L++ Q+EG   +++ TFH
Sbjct: 115 ERLFRPSRRLKPIAFPDLRYFPWTLNVSAEAPYSYSQYWARELRRMQAEGITLDSKPTFH 174

Query: 505 NLYNEVFHVNRQLVHRIKHGITPFW-TSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFG 329
           NLY+ +FHVNR  +H IK G+ PFW   +GEP+PYKW TLH+RSH VK+D+ +KIRAVFG
Sbjct: 175 NLYDTIFHVNRSHIHSIKFGLYPFWDQETGEPIPYKWNTLHARSHTVKADKDDKIRAVFG 234

Query: 328 VPKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQLSNKHFNFIFSAD 149
           VPKLLLM ENMF+WNLQ+EYLN+ + +SP+LWG+ET +GGW KL   L   +F+ + SAD
Sbjct: 235 VPKLLLMAENMFVWNLQKEYLNKRV-KSPMLWGYETFKGGWQKLWRDLFKTNFSSVLSAD 293

Query: 148 WSGFDHKALHEVIDDVHEMWKSWFIFDSGYEPTFSDQYDYSDTKSRK 8
           WSGFDH ALHEVIDDVH MW+SWF FD GYEP+ SD +DY  +++ +
Sbjct: 294 WSGFDHNALHEVIDDVHRMWRSWFDFDQGYEPSKSDTHDYHASQTEE 340


>gb|AFX73022.1| RNA dependent RNA polymerase [Grapevine partitivirus]
          Length = 584

 Score =  351 bits (901), Expect = 4e-94
 Identities = 171/295 (57%), Positives = 217/295 (73%), Gaps = 6/295 (2%)
 Frame = -1

Query: 868 TRLIRKAIYTHCSQELANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRV 689
           T +I+KAIY  CS ELA++VI+GYRRS      AE DF ++D PY D+ RDFHY RALRV
Sbjct: 33  TGIIKKAIYKICSSELADKVIHGYRRSEGGDDIAETDFQRSDVPYFDLKRDFHYLRALRV 92

Query: 688 VERTFRPKRPLKPIAFPDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARLTF 509
            E+ FRP R L PIAFPDLR+YPW LSVSAEAP++   +W+  +QQ+Q++GE  + RLTF
Sbjct: 93  CEKLFRPSRTLHPIAFPDLRFYPWTLSVSAEAPFTVEKHWRTKIQQRQADGEQLDGRLTF 152

Query: 508 HNLYNEVFHVNRQLVHRIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFG 329
           HNLY+EVF +NR L+H+IK G   FW   G P PY + TLH+RSH+VKS++P+K+RAVFG
Sbjct: 153 HNLYDEVFQLNRHLIHQIKEGDKSFWNLDGTPKPYWYNTLHTRSHMVKSNEPDKLRAVFG 212

Query: 328 VPKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQLSNKHFNFIFSAD 149
           VPKLLLM ENMF+WN+Q+EYLN+ +  S +LWGFET +GGW KL N+L +K  +   SAD
Sbjct: 213 VPKLLLMAENMFLWNIQKEYLNQKI-NSHMLWGFETFKGGWLKLWNRLYSKKCSTFLSAD 271

Query: 148 WSGFDHKALHEVIDDVHEMWKSWFIFDSGYEPTFSD------QYDYSDTKSRKEQ 2
           WSGFD  AL E IDDVH MW+SWF F S YEPT ++      Q  Y  +K+  E+
Sbjct: 272 WSGFDRFALFECIDDVHNMWRSWFDF-SKYEPTRANSGLPGIQLSYPHSKTSPEK 325


>ref|YP_003082248.1| RNA-dependent RNA polymerase [Sclerotinia sclerotiorum partitivirus
           S] gi|254034306|gb|ACT55329.1| RNA-dependent RNA
           polymerase [Sclerotinia sclerotiorum partitivirus S]
          Length = 580

 Score =  301 bits (771), Expect = 5e-79
 Identities = 153/286 (53%), Positives = 190/286 (66%), Gaps = 1/286 (0%)
 Frame = -1

Query: 904 HTTASPKEIRFITRLIRKAIYTHCSQELANEVINGYRRSATDTTSAEIDFLKTDQPYHDV 725
           HT  SP+E      +++ AI  H S  L N+V+ G RRS         DF + +QP H V
Sbjct: 24  HTKVSPREEATRFSILKHAILKHGSVGLLNQVLLGKRRSDASDERLIQDFHEFEQPVHPV 83

Query: 724 PRDFHYKRALRVVERTFRPKRPLKPIAFPDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQ 545
           PRD HY RALRV E+  +P + L PI+FPDLRYYPW  +VSAEAPY+    +++ L+ KQ
Sbjct: 84  PRDKHYLRALRVTEKLMKPAKTLHPISFPDLRYYPWTKNVSAEAPYNFEKKYEELLRDKQ 143

Query: 544 SEGEIDNARLTFHNLYNEVFHVNRQLVHRIKHGITPFWTSSGEPVPYKWTTLHSRSHLVK 365
             GEI+ A  TFHNL +E+F  NR L+H+IK G + FW   G+P PY  TTLH+R+H+V 
Sbjct: 144 RLGEIETATATFHNLEDEIFEDNRYLIHKIKEGDSQFWDKDGKPRPYYHTTLHARAHVVG 203

Query: 364 SDQPNKIRAVFGVPKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQL 185
            +  +KIRAVFGVPKLLLM ENMFIW LQ  YLN+   +  LLWG E ++GGW KL  QL
Sbjct: 204 HEDADKIRAVFGVPKLLLMAENMFIWPLQAYYLNQDTTKHHLLWGNEIMKGGWKKLWGQL 263

Query: 184 SNKHFN-FIFSADWSGFDHKALHEVIDDVHEMWKSWFIFDSGYEPT 50
            N   +  I S DWS FD +ALHEVIDDVH MWKSWF F + YEPT
Sbjct: 264 QNGRISRTILSLDWSEFDKRALHEVIDDVHSMWKSWFDF-THYEPT 308


>dbj|BAM36403.1| RNA-dependent RNA-polymerase [Rosellinia necatrix partitivirus 5]
          Length = 647

 Score =  259 bits (663), Expect = 2e-66
 Identities = 145/336 (43%), Positives = 187/336 (55%), Gaps = 46/336 (13%)
 Frame = -1

Query: 919  RYQLKHTTASPKEIRFITRLIRKAIYTHCSQELANEVINGYRRSATDTTSAEIDFLKTDQ 740
            R +LK   A  +   ++ R +RK  +     E  N+V+   RRS         DF ++DQ
Sbjct: 45   RQELKEE-AERERAEWLERQMRKIYF----DEEVNQVLTN-RRSEYSDERLIADFKESDQ 98

Query: 739  PYHDVPRDFHYKRALRVVERTFRPKRPLKPIAFPDLRYYPWNLSVSAEAPYSESTY---- 572
            P H +PRD HY RA+++    FRP R L P+ FPDLRYYPW LS+SAE P++   +    
Sbjct: 99   PLHPIPRDSHYDRAVKMTAEHFRPARELNPVHFPDLRYYPWPLSISAETPWTSEGFRFVP 158

Query: 571  -----------------------WQK------------------YLQQKQSEGEIDNARL 515
                                   W++                  YL+ KQ  G IDN+R 
Sbjct: 159  AFRDLDSETTKPKFGGAKQRAEKWKRFAHFVYRNFGSGSINVLQYLKLKQRFGLIDNSRT 218

Query: 514  TFHNLYNEVFHVNRQLVHRIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAV 335
            TFHNLY+E+F  NR  VH IK G   FW   G+P PY W  LH+RSH+V  D+P+KIRAV
Sbjct: 219  TFHNLYDEMFQYNRGRVHNIKDGEGAFW-KDGKPQPYFWNMLHARSHVVAQDEPDKIRAV 277

Query: 334  FGVPKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQLSNKH-FNFIF 158
            FG  KLLLM+E MFIW LQ  YLN   G   +LWG+E  RGGW KL N++  +  FN I 
Sbjct: 278  FGATKLLLMIELMFIWPLQASYLNG--GSGRMLWGYEMTRGGWKKLYNEMHKRQPFNTIL 335

Query: 157  SADWSGFDHKALHEVIDDVHEMWKSWFIFDSGYEPT 50
              DWS FD + LHE+ID VH++W+S+F FD  YEPT
Sbjct: 336  GIDWSKFDKRLLHELIDQVHQIWRSYFSFDR-YEPT 370


>dbj|BAH08700.1| putative RNA-dependent RNA polymerase [Flammulina velutipes
           isometric virus]
          Length = 587

 Score =  254 bits (648), Expect = 9e-65
 Identities = 132/277 (47%), Positives = 175/277 (63%), Gaps = 5/277 (1%)
 Frame = -1

Query: 865 RLIRKAIYTHCSQELANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVV 686
           R++RKA Y        +E+ NG+RRS     + + DF+  DQP H V RD HY++ALR V
Sbjct: 39  RIVRKAFYKFLHPYEVDEICNGFRRSHGGPEATDEDFMSYDQPEHKVDRDQHYRKALRKV 98

Query: 685 ERTFRPKRPLKPIAFPDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSE---GEIDNARL 515
              FRP    KP+ + D RYYPW L+VSAE+PY+   ++  YL++ Q E   GE      
Sbjct: 99  AEAFRPPEKFKPVHYTDQRYYPWELAVSAESPYNIGQWYDDYLKRLQRELPPGEKFTYAK 158

Query: 514 TFHNLYNEVFHVNRQLVHRIKHGITPFW-TSSGEPVPYKWTTLHSRSHLVKSDQPNKIRA 338
           TFHN Y+++F  NR  +H+IK     F+  ++G P PY WT L SR H+VK+D+P+KIRA
Sbjct: 159 TFHNFYDKIFVDNRLNIHKIKDRHPDFFDAATGLPKPYYWTNLRSRFHVVKADEPDKIRA 218

Query: 337 VFGVPKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQLSN-KHFNFI 161
           VFGVPKLLL  E  FIW +   YL+    + PLLWG E + GGW KL   + N +  N +
Sbjct: 219 VFGVPKLLLQAEQTFIWPMLSHYLDNS-DRYPLLWGNEMMSGGWRKLNRTIYNGRTVNTV 277

Query: 160 FSADWSGFDHKALHEVIDDVHEMWKSWFIFDSGYEPT 50
            S DWS FD +ALHEVIDDVH++W+S+F F S Y PT
Sbjct: 278 LSLDWSQFDKRALHEVIDDVHDIWRSYFDF-SFYMPT 313


>dbj|BAQ36631.1| RNA-dependent RNA polymerase [Fusarium solani partitivirus 2]
          Length = 608

 Score =  249 bits (636), Expect = 2e-63
 Identities = 136/307 (44%), Positives = 179/307 (58%), Gaps = 36/307 (11%)
 Frame = -1

Query: 862 LIRKAIYTHCSQELANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVVE 683
           L+ +A+     +E+   + N  RRS     +   DF+  +QPYH +P+D +Y RA+    
Sbjct: 34  LVNRALRFFAKEEVDQALSN--RRSEHSEEALINDFMSFEQPYHPIPKDDNYYRAVARTT 91

Query: 682 RTFRPKRPLKPIAFPDLRYYPWNLSVSAEAPY---------------------------S 584
             F+P +PL P+++PDLRYYPW L  +AEAP+                           S
Sbjct: 92  ELFQPDKPLHPVSYPDLRYYPWKLKPNAEAPWNIPDFTFTPTFRDLDDESETPKLEENLS 151

Query: 583 ESTYW--------QKYLQQKQSEGEIDNARLTFHNLYNEVFHVNRQLVHRIKHGITPFWT 428
             + W        ++YL  K +   IDN    FHNLYNE+F  NR LVH+IK G   FW 
Sbjct: 152 RLSNWMSDRVVSVRQYLNAKYNIRMIDNQFPKFHNLYNEIFQYNRTLVHQIKEGHPAFW- 210

Query: 427 SSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFGVPKLLLMVENMFIWNLQREYLNRPLGQ 248
             G P PY WTTLH+RSH+V  D+P+KIRAVFGV KLLLM+ENMFIW +Q  YLN P  +
Sbjct: 211 KHGTPKPYFWTTLHARSHVVGKDEPDKIRAVFGVTKLLLMIENMFIWPMQALYLNNP-SK 269

Query: 247 SPLLWGFETIRGGWNKLINQL-SNKHFNFIFSADWSGFDHKALHEVIDDVHEMWKSWFIF 71
             LLWG E IRGGW KL N++  N   N   S DWS FD + L E+IDDVH++W+++F F
Sbjct: 270 GRLLWGREMIRGGWRKLFNEIHENGKPNTFLSLDWSQFDKRLLFELIDDVHKIWRTYFDF 329

Query: 70  DSGYEPT 50
            S Y+PT
Sbjct: 330 -SRYQPT 335


>dbj|BAT32942.1| RNA-dependent RNA Polymerase [Rosellinia necatrix partitivirus 7]
          Length = 608

 Score =  234 bits (596), Expect = 1e-58
 Identities = 131/351 (37%), Positives = 192/351 (54%), Gaps = 43/351 (12%)
 Frame = -1

Query: 931  RSTNRYQL--KHTTASPKEIRFITRLIRKAIYTHCSQELANEVINGYRRSATDTTSAEID 758
            R  N Y++  ++     + + F  + + + +    ++E  ++V+   R   +D      D
Sbjct: 8    RKLNNYEMPKRYDDDRQQSMDFRNQWLERQMRKFFTKEEIDQVLTNRRSDYSDEALIN-D 66

Query: 757  FLKTDQPYHDVPRDFHYKRALRVVERTFRPKRPLKPIAFPDLRYYPWNLSVSAEAP---- 590
            F + + PYH++P D++ + A+  V   FRP R L PI +PDLRYYPW L+VSAEAP    
Sbjct: 67   FKRCEHPYHEIPLDYNVQTAIDAVTEQFRPNRVLHPIQYPDLRYYPWTLNVSAEAPWTSY 126

Query: 589  --------------------------------YSESTYWQKYLQQKQSEGEIDNARLTFH 506
                                            +S+ T  + YL+ KQ  G I+N  +TFH
Sbjct: 127  NFHFVPMDRSVDFESTQPKLIFDINQVNKLRKFSKPTDVKTYLRWKQQVGLIENDHITFH 186

Query: 505  NLYNEVFHVNRQLVHRIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFGV 326
            NLY+E+F  NR L+H+IK G  PFW   G+PVPY W TLH RSH+V  ++P+K+R VFG 
Sbjct: 187  NLYDEIFIYNRPLIHQIKEGEEPFW-KDGQPVPYLWNTLHVRSHVVAHNEPDKLRGVFGA 245

Query: 325  PKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQLSNKHFNF-----I 161
             KL+L  E  FIW LQ  YLN   G+  LLWG E  +GGW KL +++    + F     +
Sbjct: 246  TKLVLQTEQPFIWPLQASYLNTDAGR--LLWGREMSKGGWRKLFSEI----YTFGPPSTV 299

Query: 160  FSADWSGFDHKALHEVIDDVHEMWKSWFIFDSGYEPTFSDQYDYSDTKSRK 8
             S DWS FD + LH++I  VH +W+S+F F + YEPT  +QY  ++ +  K
Sbjct: 300  LSTDWSQFDKRLLHQLIRIVHRIWRSYFDF-TRYEPT--NQYPNANPRDPK 347


>emb|CAJ34337.1| RNA-dependent RNA polymerase, partial [Ophiostoma quercus
           partitivirus]
          Length = 132

 Score =  223 bits (567), Expect = 2e-55
 Identities = 98/131 (74%), Positives = 120/131 (91%)
 Frame = -1

Query: 418 EPVPYKWTTLHSRSHLVKSDQPNKIRAVFGVPKLLLMVENMFIWNLQREYLNRPLGQSPL 239
           EP+PY++T LHSRSH+V+SD+P+KIRAVFGVPKLLLMVENMFIWN+Q++YLN PLG+SPL
Sbjct: 1   EPIPYEFTYLHSRSHMVQSDKPDKIRAVFGVPKLLLMVENMFIWNIQKDYLNGPLGKSPL 60

Query: 238 LWGFETIRGGWNKLINQLSNKHFNFIFSADWSGFDHKALHEVIDDVHEMWKSWFIFDSGY 59
           LWGFETIRGGW KLI+QL++K  + I SADWSGFDHKALHEVIDDVH++WKSWF F+ GY
Sbjct: 61  LWGFETIRGGWMKLISQLTSKPLSSIISADWSGFDHKALHEVIDDVHDIWKSWFDFNQGY 120

Query: 58  EPTFSDQYDYS 26
           EP+ S+ +DY+
Sbjct: 121 EPSLSNTHDYT 131


>gb|ABJ99996.1| putative RdRp [Vicia faba partitivirus 1]
          Length = 576

 Score =  220 bits (561), Expect = 1e-54
 Identities = 122/292 (41%), Positives = 165/292 (56%), Gaps = 23/292 (7%)
 Frame = -1

Query: 850 AIYTHCSQELANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVVERTFR 671
           A+Y   S E A  VINGYRRS  +  + + D  K D PY  V +D HY +A+  V++ F 
Sbjct: 36  ALYKFLSPEEAELVINGYRRSPWNDEALKDDIAKLDSPYFQVTKDEHYYKAIAHVKKLFT 95

Query: 670 PKRPLKPIAFPDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGE-------------- 533
           P  PLKP+ F DLR+YPW LS +  AP++ S  WQ Y+ +K   G+              
Sbjct: 96  PDTPLKPVHFADLRHYPWQLSSNIGAPFATSPEWQDYINKKFLTGQTAENYRDLFKEAHH 155

Query: 532 ------IDNARLTFHNLYNEVFHVNRQLVHRIKHGITPFWTSSGEPVPYKWTTLHSRSHL 371
                 + + R+T  NLYNE+F +NR+ +H IK+G T      G  + Y W T  +R HL
Sbjct: 156 TDLYPKMLDRRMTKRNLYNEMFLINRKSIHIIKNGRTT--NDHGHDLKY-WNTAFARQHL 212

Query: 370 VKSDQPNKIRAVFGVPKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLIN 191
           V+ D P+K+R VFG P  LLM E MFIW LQ   L R   QSP+LWG+ET+ GGW++L +
Sbjct: 213 VEDDDPDKVRLVFGAPSTLLMAELMFIWPLQVSLLARG-PQSPMLWGYETLTGGWSRLFS 271

Query: 190 QLSN--KHFNFIFSADWSGFDHKALHEVIDDVHEM-WKSWFIFDSGYEPTFS 44
             S+    ++ + + DWS FD  A H VI D+H M  +  F F  GY PT S
Sbjct: 272 WASDTMPRYSTVLTLDWSRFDKDARHTVIRDIHAMIMRPMFTFTEGYHPTIS 323


>dbj|BAH56481.1| RNA-dependent RNA polymerase [Flammulina velutipes browning virus]
          Length = 580

 Score =  218 bits (556), Expect = 4e-54
 Identities = 124/281 (44%), Positives = 164/281 (58%), Gaps = 9/281 (3%)
 Frame = -1

Query: 817 NEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVVERTFRPKRPLKPIAFP 638
           N V N Y+RS TD  S +  F K D P H+VPRD HY RA  V+   FRP  P++P+ + 
Sbjct: 59  NHVANEYKRSETDLDSTKAAFFKGDIPDHEVPRDEHYNRAFSVIVSKFRPPEPIRPVHYA 118

Query: 637 DLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARLTFHNLYNEVFHVNRQLVHR 458
           DLR YPW L  SAEAP+S        L  +  +G + NA+  FHNL+N VF  NRQ VH 
Sbjct: 119 DLRLYPWPLKPSAEAPFSNDKSLLALLALRNRQGFLPNAKPNFHNLFNWVFGFNRQCVHL 178

Query: 457 IKH-----GITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFGVPKLLLMVENMF 293
           IK      G   +W + G   P     +H++S ++    PNK+R +FGVPKL +MVE MF
Sbjct: 179 IKKGKDNLGPNEYWPAHGFLYP---INIHTKSAIIGIHDPNKVRTIFGVPKLTVMVEAMF 235

Query: 292 IWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQLSNKHF--NFIFSADWSGFDHKALH 119
            W L R Y  R   QSPLLWG+ET+ GGW KL ++L    F    I S DWS FD +AL 
Sbjct: 236 FWPLFRYY--RFEQQSPLLWGYETMLGGWYKLNHELHLNPFYQGSILSLDWSFFDGRALF 293

Query: 118 EVIDDVH--EMWKSWFIFDSGYEPTFSDQYDYSDTKSRKEQ 2
            VI+D++  +  KS+F F++GY PT     DY D+ +  ++
Sbjct: 294 SVINDLYSDKGVKSYFEFNNGYIPT----VDYPDSSTHPQK 330


>ref|YP_007419077.1| RNA-dependent RNA polymerase [Rosellinia necatrix partitivirus 2]
           gi|448261538|dbj|BAM78602.1| RNA-dependent RNA
           polymerase [Rosellinia necatrix partitivirus 2]
          Length = 603

 Score =  202 bits (514), Expect = 3e-49
 Identities = 118/315 (37%), Positives = 168/315 (53%), Gaps = 28/315 (8%)
 Frame = -1

Query: 865 RLIRKAIYTHCSQELANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVV 686
           R+I  A+  H + +  ++V+NGYRRS  +  +   D  K D   H V +D HY+ A++ V
Sbjct: 40  RIIDFALRKHLTSDEFDQVVNGYRRSPWNEDALNKDIEKLDSDEHTVIKDQHYENAIQHV 99

Query: 685 ERTFRPKRPLKPIAFPDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEG---------- 536
           ++   P++PL+P+ F DLR Y W LS +  AP++ S +WQ Y++ K +            
Sbjct: 100 QKLLTPEKPLQPVHFADLRRYKWRLSTNIGAPFASSKHWQDYVKAKFNHFRDGTPFENIA 159

Query: 535 ---------------EIDNARLTFHNLYNEVFHVNRQLVHRIKHGITPFWTSSGEPVPYK 401
                          EI +AR+T HNLY E F+V+R+ +HRIK G T      G    Y 
Sbjct: 160 HRDLFVEAHKDSQPLEITDARMTKHNLYTEAFYVSRETIHRIKDGETT--DRYGNDARY- 216

Query: 400 WTTLHSRSHLVKSDQPNKIRAVFGVPKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFET 221
           W T  +R HLVK+D+ +K+R VFG P  LL  E MFIW L    L+     + +LW FET
Sbjct: 217 WNTAFARQHLVKADEDDKVRLVFGAPFSLLCAELMFIWPLFIFLLSLKGSTAFMLWTFET 276

Query: 220 IRGGWNKLINQLSN--KHFNFIFSADWSGFDHKALHEVIDDV-HEMWKSWFIFDSGYEPT 50
           I GGW +L+N  +      + + + DWSGFD  A H VI D+ H + +  F F  GY PT
Sbjct: 277 IIGGWYRLVNFFTTYALRHSTVVTVDWSGFDRYARHTVIKDIHHRIIRPMFDFSHGYHPT 336

Query: 49  FSDQYDYSDTKSRKE 5
                DY DT   K+
Sbjct: 337 ----RDYPDTSKTKD 347


>ref|YP_656506.1| RNA-dependent RNA polymerase [Raphanus sativus cryptic virus 1]
           gi|73923287|gb|AAX51289.2| RNA-dependent RNA polymerase
           [Raphanus sativus cryptic virus 1]
          Length = 573

 Score =  195 bits (495), Expect = 5e-47
 Identities = 104/277 (37%), Positives = 154/277 (55%), Gaps = 5/277 (1%)
 Frame = -1

Query: 865 RLIRKAIYTHCSQELANE---VINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRAL 695
           +L+R +I  + S   +N+   V+NGY RS  D  +AE  F++ D    D+ +D +Y +A 
Sbjct: 32  QLVRSSICLYSSLLGSNDTDTVLNGYYRSHADEDTAEQFFMRYDVEPFDIIKDNYYSQAF 91

Query: 694 RVVERTFRPKRPLKPIAFPDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARL 515
             V   FRP  P+ P+ F D+R+YPW +S SAE P++     +K +Q  +  G +DNAR+
Sbjct: 92  DTVTEWFRPSAPIHPVHFTDVRWYPWKISTSAERPFTHDPLLKKKVQLSKQLGLLDNARM 151

Query: 514 TFHNLYNEVFHVNRQLVHRIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAV 335
           +FHN YN++F   R   H +K            PV      LH +  LV+S +P KIR V
Sbjct: 152 SFHNCYNDIFTYCRHYTHEVK---------DARPVTLHHIDLHVKPALVRSGEPPKIRTV 202

Query: 334 FGVPKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQLSNKHFNF--I 161
           FGVPK L+  E MF W L  +Y      ++PLLW +ET+ GGW +L ++   +  +F  I
Sbjct: 203 FGVPKSLIFAEAMFFWPLFSDYFTN--SETPLLWNYETLNGGWYRLNDEFYQQWQSFCTI 260

Query: 160 FSADWSGFDHKALHEVIDDVHEMWKSWFIFDSGYEPT 50
           F+ DWS FD +    ++DD  +  KS+F F   Y PT
Sbjct: 261 FNLDWSEFDMRVYFSMLDDCRDAVKSYFCFCGNYCPT 297


>gb|AAU88207.1| RNA-dependent RNA polymerase [Radish partitivirus JC-2004]
          Length = 573

 Score =  193 bits (490), Expect = 2e-46
 Identities = 104/277 (37%), Positives = 154/277 (55%), Gaps = 5/277 (1%)
 Frame = -1

Query: 865 RLIRKAIYTHCSQELANE---VINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRAL 695
           +L+R +I  + S   +N+   V+NGY RS  D  +AE  F++ D    D+ +D +Y +A 
Sbjct: 32  QLVRSSICLYSSLLGSNDTDTVLNGYYRSHADEDTAEQFFMRYDVEPFDIIKDNYYSQAF 91

Query: 694 RVVERTFRPKRPLKPIAFPDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARL 515
             V   FRP  P+ P+ F D+R+YPW +S SAE P++     +K +Q  +  G +DNAR+
Sbjct: 92  DTVTEWFRPSAPIHPVHFTDVRWYPWEISTSAERPFTHDPLLKKKVQLSKQLGLLDNARM 151

Query: 514 TFHNLYNEVFHVNRQLVHRIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAV 335
           +FHN YN++F   R   H +K            PV      LH +  LV+S +P KIR V
Sbjct: 152 SFHNCYNDIFTYCRHYTHEVK---------DVRPVTLHHIDLHVKPALVRSGEPPKIRTV 202

Query: 334 FGVPKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQLSNKHFNF--I 161
           FGVPK L+  E MF W L  +Y      ++PLLW +ET+ GGW +L ++   +  +F  I
Sbjct: 203 FGVPKSLIFAEAMFSWPLFSDYFTN--SETPLLWNYETLNGGWYRLNDEFYQQWQSFCTI 260

Query: 160 FSADWSGFDHKALHEVIDDVHEMWKSWFIFDSGYEPT 50
           F+ DWS FD +    ++DD  +  KS+F F   Y PT
Sbjct: 261 FNLDWSEFDMRVYFSMLDDCRDAVKSYFCFCGNYCPT 297


>emb|CAQ53729.1| RNA-dependent RNA polymerase [Chondrostereum purpureum cryptic
           virus 1]
          Length = 587

 Score =  186 bits (471), Expect = 3e-44
 Identities = 102/254 (40%), Positives = 142/254 (55%), Gaps = 4/254 (1%)
 Frame = -1

Query: 799 YRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVVERTFRPKRPLKPIAFPDLRYYP 620
           ++RS  D +S    F K D PYH VP+D  Y+RAL    + F P+ P+KP+ + DLRYYP
Sbjct: 70  FKRSTIDDSSITEAFFKGDLPYHKVPKDGSYQRALAATMQVFAPQVPIKPVHYCDLRYYP 129

Query: 619 WNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARLTFHNLYNEVFHVNRQLVHRIKHG-- 446
           W L  SAE P+++     K +Q      +I + R++F NLYN +F   R ++H IK+G  
Sbjct: 130 WKLRPSAELPFTDDPALFKRVQHAAERKQIPDKRMSFGNLYNHIFEYLRPIIHYIKNGPF 189

Query: 445 ITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFGVPKLLLMVENMFIWNLQREYL 266
             PF TS  +         H+RS +     PNK+R V+G PK+ +  + MF W L   Y 
Sbjct: 190 HLPFKTSWPQDDYLTPMRSHARSAIQPISDPNKVRFVYGYPKVGIFPQAMFFWPLFVYY- 248

Query: 265 NRPLGQSPLLWGFETIRGGWNKLINQLSNKH--FNFIFSADWSGFDHKALHEVIDDVHEM 92
               GQSPLLWG+ET+ GGW +L ++L +       I   DW GFD  AL EV DD+  +
Sbjct: 249 -HITGQSPLLWGYETMTGGWYRLNHELRSTPGISGSILELDWQGFDIHALFEVFDDIKNL 307

Query: 91  WKSWFIFDSGYEPT 50
             S+F    GY+PT
Sbjct: 308 SWSFFDCSHGYQPT 321


>gb|AHL25151.1| RNA-dependent RNA polymerase [Heterobasidion partitivirus 12]
          Length = 585

 Score =  164 bits (416), Expect = 7e-38
 Identities = 90/257 (35%), Positives = 136/257 (52%)
 Frame = -1

Query: 820 ANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVVERTFRPKRPLKPIAF 641
           A+++INGY            +  K D   H VP D HY RA ++    FRP RP++P+ F
Sbjct: 72  ADKIINGYHHPVATIPFMVENLKKGDLSDHPVPHDEHYLRARKMAADAFRPPRPIRPVHF 131

Query: 640 PDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARLTFHNLYNEVFHVNRQLVH 461
            DLR+Y WN   + E PY  +   Q+Y+Q   + G   +AR++F NL + VF   R  +H
Sbjct: 132 ADLRFYNWNWHPNVEEPYYSNKRAQEYVQAAHTLGLTPDARMSFGNLRDYVFMDTRHYLH 191

Query: 460 RIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFGVPKLLLMVENMFIWNL 281
           +IK         S     +    +H +  L  +D+  KIR ++GV K  ++ + MF W L
Sbjct: 192 QIKRN-----EISNPKTLWPLMKIHVKPALTGTDE-QKIRVIYGVSKRHVLPQCMFFWPL 245

Query: 280 QREYLNRPLGQSPLLWGFETIRGGWNKLINQLSNKHFNFIFSADWSGFDHKALHEVIDDV 101
            R Y+       PLLWGFETI GG  KL + +   +F    + DWSGFD ++L  +  ++
Sbjct: 246 FRHYIEN--DTDPLLWGFETILGGMMKLNSLMHRLYFQTFVTVDWSGFDLRSLFSIQREI 303

Query: 100 HEMWKSWFIFDSGYEPT 50
            + W+++F F +GY PT
Sbjct: 304 FDDWRTYFDFSNGYIPT 320


>gb|AAP74192.1| RNA-dependent RNA polymerase [Oyster mushroom isometric virus II]
          Length = 610

 Score =  164 bits (416), Expect = 7e-38
 Identities = 118/343 (34%), Positives = 156/343 (45%), Gaps = 62/343 (18%)
 Frame = -1

Query: 892  SPKEIRFITRLIRKAIYTHCSQELANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDF 713
            +P  +     ++  A+    +    +EVINGYRRS     S   D  K +   H VP+D 
Sbjct: 23   TPLRVETYNNIVDHALRRFLTPAETDEVINGYRRSVWSEDSLMNDINKLNSEEHSVPKDE 82

Query: 712  HYKRALRVVERTFRPKRPLKPIAFPDLRYYPWNLSVSAEAPY------------------ 587
            HY  A+  V++ F P+ PL+P+ F DLR YPW LS S  APY                  
Sbjct: 83   HYWNAISHVQKMFTPEVPLQPVHFTDLRKYPWQLSTSVGAPYATSKSWQNYVRESLMATR 142

Query: 586  ------------------------------SESTYWQKYLQQ------KQSEGEIDNARL 515
                                          S S    K LQ+      K    +I + R+
Sbjct: 143  TATRPLNSLNPTTAIYLLKPTKVNLSILRCSRSNDETKPLQRIVLHHKKTDPLKIYDIRM 202

Query: 514  TFHNLYNEVFHVNRQLVHRIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSD-----QPN 350
            T HNLY+E F   R+ +H  K G+    T SG    Y W T  +R H+V+       QP 
Sbjct: 203  TKHNLYSEAFFHARKNIHYAKLGLRE--TDSGHDFRY-WNTAFARQHIVEKKPGILAQP- 258

Query: 349  KIRAVFGVPKLLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQLSNK-- 176
            K+R VFG P  LL  E +FIW LQ   L      SP+LWG+ETI GGW +L   LS K  
Sbjct: 259  KVRLVFGAPFTLLTAELIFIWPLQTHLLLMQ-DFSPMLWGYETILGGWYRLRGHLSGKID 317

Query: 175  HFNFIFSADWSGFDHKALHEVIDDVH-EMWKSWFIFDSGYEPT 50
                + + DWSGFD  A H VI D+H ++ +  F F +GY PT
Sbjct: 318  TDKLVATLDWSGFDRYARHTVIKDIHTKVMRPCFDFTNGYHPT 360


>gb|AHL25162.1| RNA-dependent RNA polymerase [Heterobasidion partitivirus 15]
          Length = 581

 Score =  161 bits (407), Expect = 8e-37
 Identities = 94/260 (36%), Positives = 136/260 (52%), Gaps = 3/260 (1%)
 Frame = -1

Query: 820 ANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVVERTFRPKRPLKPIAF 641
           A+ ++NGY        +    F K D P H +P+D HY  AL    + F P + L+P+ F
Sbjct: 67  AHHIVNGYHHPIATLDAVINTFKKGDLPDHKIPKDLHYYSALLETTKRFAPPQKLRPVHF 126

Query: 640 PDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARLTFHNLYNEVFHVNRQLVH 461
            DLR+Y WN   + E P+      Q+ ++     G + + R++F NL N VF   R+ +H
Sbjct: 127 ADLRFYKWNWHPNVEEPFRSEAELQQAVEAAYHAGLLPDGRMSFGNLKNVVFIRVREWLH 186

Query: 460 RIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFGVPKLLLMVENMFIWNL 281
           +IK         +     Y    +H +  L   D+  KIR V+GV KL ++ E MF W L
Sbjct: 187 QIKRA-----QITNPNTLYPLINIHVKPALTTPDE-TKIRVVYGVSKLHVLPEAMFFWPL 240

Query: 280 QREYLNRPLGQSPLLWGFETIRGGWNKLINQLS--NKHFNFIFSADWSGFDHKALHEVI- 110
            R YL+    +SPLLWGFETI GG   L N ++    +F      DWSGFD ++L E I 
Sbjct: 241 FRHYLDN-RKESPLLWGFETILGGMAVLHNMMTIPRLYFQTFVMVDWSGFDLRSLFEPIR 299

Query: 109 DDVHEMWKSWFIFDSGYEPT 50
            DV   W+++F F++GY PT
Sbjct: 300 TDVFPAWRTYFDFNNGYIPT 319


>gb|AHL25155.1| RNA-dependent RNA polymerase [Heterobasidion partitivirus 13]
          Length = 581

 Score =  158 bits (400), Expect = 5e-36
 Identities = 94/260 (36%), Positives = 137/260 (52%), Gaps = 3/260 (1%)
 Frame = -1

Query: 820 ANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVVERTFRPKRPLKPIAF 641
           A  VI  +        S      + D P H VP+D HY RAL    + F P + ++PI F
Sbjct: 67  AEYVIKRFHHPIATIDSVNETLQRGDLPDHPVPKDEHYYRALTETTKRFAPPQLIRPIHF 126

Query: 640 PDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARLTFHNLYNEVFHVNRQLVH 461
            DLRYY WN   + E PY  ++  +  +Q     G +++ R++F NL N VF   R  +H
Sbjct: 127 ADLRYYEWNWHPNVEEPYVSNSQLKTAVQDAYHAGLLEDGRMSFGNLKNHVFMDVRHFLH 186

Query: 460 RIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFGVPKLLLMVENMFIWNL 281
           RIK G       S     +    +H +  L ++D   KIR VFGV K  ++   MF W L
Sbjct: 187 RIKRG-----QISDPHTLWPLINMHVKPALTETD-TTKIRLVFGVSKRHVLPRAMFFWPL 240

Query: 280 QREYLNRPLGQSPLLWGFETIRGGWNKLINQ--LSNKHFNFIFSADWSGFDHKALHEVI- 110
            R YL+    +SP+LWGFETI GG   L ++  LS  ++    + DWSGFD ++L  +I 
Sbjct: 241 FRYYLDN-RDKSPMLWGFETILGGMMLLNSEMLLSRLYYQTFVTVDWSGFDLRSLFSIIR 299

Query: 109 DDVHEMWKSWFIFDSGYEPT 50
           +D+   W+++F F++GY PT
Sbjct: 300 EDIFPAWRTYFDFNNGYMPT 319


>gb|AHL25153.1| RNA-dependent RNA polymerase [Heterobasidion partitivirus 13]
          Length = 581

 Score =  158 bits (400), Expect = 5e-36
 Identities = 94/260 (36%), Positives = 137/260 (52%), Gaps = 3/260 (1%)
 Frame = -1

Query: 820 ANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVVERTFRPKRPLKPIAF 641
           A  VI  +        S      + D P H VP+D HY RAL    + F P + ++PI F
Sbjct: 67  AEYVIKRFHHPIATIDSVNETLQRGDLPDHPVPKDEHYYRALTETTKRFAPPQLIRPIHF 126

Query: 640 PDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARLTFHNLYNEVFHVNRQLVH 461
            DLRYY WN   + E PY  ++  +  +Q     G +++ R++F NL N VF   R  +H
Sbjct: 127 ADLRYYEWNWHPNVEEPYVSNSQLKTAVQDAYHAGLLEDGRMSFGNLKNHVFMDVRHFLH 186

Query: 460 RIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFGVPKLLLMVENMFIWNL 281
           RIK G       S     +    +H +  L ++D   KIR VFGV K  ++   MF W L
Sbjct: 187 RIKRG-----QISDPHTLWPLINMHVKPALTETD-TTKIRLVFGVSKRHVLPRAMFFWPL 240

Query: 280 QREYLNRPLGQSPLLWGFETIRGGWNKLINQ--LSNKHFNFIFSADWSGFDHKALHEVI- 110
            R YL+    +SP+LWGFETI GG   L ++  LS  ++    + DWSGFD ++L  +I 
Sbjct: 241 FRYYLDN-RDKSPMLWGFETILGGMMLLNSEMLLSRLYYQTFVTVDWSGFDLRSLFSIIR 299

Query: 109 DDVHEMWKSWFIFDSGYEPT 50
           +D+   W+++F F++GY PT
Sbjct: 300 EDIFPAWRTYFDFNNGYMPT 319


>gb|ACO37245.1| putative RNA-dependent RNA polymerase [Heterobasidion partitivirus
           3]
          Length = 585

 Score =  148 bits (374), Expect = 5e-33
 Identities = 95/284 (33%), Positives = 143/284 (50%), Gaps = 2/284 (0%)
 Frame = -1

Query: 859 IRKAIYTHCSQELANEVINGYRRSATDTTSAEIDFLKTDQPYHDVPRDFHYKRALRVVER 680
           + K I  H    +A ++  GY            +  K D P H VP D HY  A +    
Sbjct: 59  VGKFIDKHLPGHMAQKIKFGYHHPVASLPFMITNLKKGDLPDHPVPHDQHYTAARKAAAD 118

Query: 679 TFRPKRPLKPIAFPDLRYYPWNLSVSAEAPYSESTYWQKYLQQKQSEGEIDNARLTFHNL 500
            FRP R ++P+ F DLRYY WN   + E PY      Q+Y++   + G ID+ARL+F NL
Sbjct: 119 AFRPPRLVRPVHFADLRYYKWNWHPNVEEPYYSDPKLQQYVEHCYALGLIDDARLSFGNL 178

Query: 499 YNEVFHVNRQLVHRIKHGITPFWTSSGEPVPYKWTTLHSRSHLVKSDQPNKIRAVFGVPK 320
            + VF   R  +H IK+G     T + +  P     +H +  L +  +  KIR ++GV K
Sbjct: 179 KDFVFMDTRHYLHLIKNGSI---TDNNQLWPI--MKIHVKPALTEPTE-TKIRVIYGVSK 232

Query: 319 LLLMVENMFIWNLQREYLNRPLGQSPLLWGFETIRGGWNKLINQLS--NKHFNFIFSADW 146
             ++ + MF W L R Y+      SPLLWG ET  GG  K+ N +S    +     + DW
Sbjct: 233 RHILAQAMFFWPLFRYYIEE--HTSPLLWGNETFTGGMLKIHNLISVPRLYSQTYLTVDW 290

Query: 145 SGFDHKALHEVIDDVHEMWKSWFIFDSGYEPTFSDQYDYSDTKS 14
           SGFD ++L  +  ++ + W+++F F + Y PT +    Y D+K+
Sbjct: 291 SGFDLRSLFTIQREIFDDWRTYFDF-TAYIPTRT----YPDSKT 329