BLASTX nr result
ID: Cornus23_contig00024102
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00024102
(399 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN76535.1| hypothetical protein VITISV_034845 [Vitis vinifera] 66 4e-27
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 68 3e-26
emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera] 68 3e-26
ref|XP_008363252.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 67 3e-26
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group] 76 6e-26
gb|AAW57815.1| putative polyprotein [Oryza sativa Japonica Group] 76 6e-26
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s... 75 9e-26
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ... 75 9e-26
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-... 75 1e-25
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group... 75 1e-25
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni... 75 1e-25
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja... 75 1e-25
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera] 69 1e-25
gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subc... 75 1e-25
gb|AAX96807.1| retrotransposon protein, putative, Ty1-copia sub-... 73 1e-25
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group] 75 2e-25
gb|ABA99751.1| retrotransposon protein, putative, Ty1-copia subc... 75 2e-25
gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subc... 75 2e-25
gb|ABA96779.1| retrotransposon protein, putative, Ty1-copia subc... 75 2e-25
gb|ABF97537.1| retrotransposon protein, putative, Ty1-copia subc... 75 2e-25
>emb|CAN76535.1| hypothetical protein VITISV_034845 [Vitis vinifera]
Length = 558
Score = 66.2 bits (160), Expect(3) = 4e-27
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = -1
Query: 183 GKVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSI 4
G++ + T NP HW ++RVL+YL GTI YGL + +P+VLEG+SDA D DE KSI
Sbjct: 406 GRLSRYTQNPNQDHWTVVRRVLKYLRGTIDYGLCFNGFPSVLEGFSDANWISDSDEIKSI 465
Query: 3 S 1
S
Sbjct: 466 S 466
Score = 62.4 bits (150), Expect(3) = 4e-27
Identities = 29/42 (69%), Positives = 34/42 (80%)
Frame = -2
Query: 293 QI*KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
Q+ KN SVAQ+EYA IIGSL+Y MNCTRPDI + VG+LSR
Sbjct: 369 QLKKNREHSVAQIEYAHIIGSLMYLMNCTRPDIIYVVGRLSR 410
Score = 39.7 bits (91), Expect(3) = 4e-27
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -3
Query: 382 VSQAHYIDKILKKYNQFETKSAPTLYDSSIKFKK 281
+SQ HY++ IL+K+ F+ K TLYD S + KK
Sbjct: 339 LSQEHYVENILRKFEHFDCKPVSTLYDPSSQLKK 372
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 68.2 bits (165), Expect(3) = 3e-26
Identities = 33/61 (54%), Positives = 42/61 (68%)
Frame = -1
Query: 183 GKVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSI 4
GK+ + T NPG HW+ + RVL+YL T Y LHY +YPAVLEGYSDA ++ +SKS
Sbjct: 1117 GKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYXLHYTRYPAVLEGYSDANWISNVKDSKSH 1176
Query: 3 S 1
S
Sbjct: 1177 S 1177
Score = 65.1 bits (157), Expect(3) = 3e-26
Identities = 29/39 (74%), Positives = 37/39 (94%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+G SV+Q+EY++IIGSL+Y M+CTRPDIA+AVGKLSR
Sbjct: 1083 KNKGESVSQVEYSRIIGSLMYLMSCTRPDIAYAVGKLSR 1121
Score = 32.3 bits (72), Expect(3) = 3e-26
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 382 VSQAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMKAE 269
+SQ+HY+DKIL K+++ + A T D ++ K K E
Sbjct: 1050 LSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGE 1087
>emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]
Length = 1096
Score = 67.8 bits (164), Expect(3) = 3e-26
Identities = 30/48 (62%), Positives = 36/48 (75%)
Frame = -1
Query: 183 GKVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDA 40
GK+ + T NPG HW+ + RVL+YL T YGLHY +YPAVLEGYSDA
Sbjct: 911 GKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGYSDA 958
Score = 65.1 bits (157), Expect(3) = 3e-26
Identities = 29/39 (74%), Positives = 37/39 (94%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+G SV+Q+EY++IIGSL+Y M+CTRPDIA+AVGKLSR
Sbjct: 877 KNKGESVSQVEYSRIIGSLMYLMSCTRPDIAYAVGKLSR 915
Score = 32.3 bits (72), Expect(3) = 3e-26
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 382 VSQAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMKAE 269
+SQ+HY+DKIL K+++ + A T D ++ K K E
Sbjct: 844 LSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGE 881
>ref|XP_008363252.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC103426950 [Malus domestica]
Length = 724
Score = 66.6 bits (161), Expect(3) = 3e-26
Identities = 32/60 (53%), Positives = 42/60 (70%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
++ + T NPG HWEAL RV+RYL T+ YGLHY +YP VLEG++DA D ++KS S
Sbjct: 247 RLSRYTCNPGHDHWEALIRVMRYLKHTMNYGLHYTRYPPVLEGFTDANWISDSTDTKSTS 306
Score = 60.1 bits (144), Expect(3) = 3e-26
Identities = 25/39 (64%), Positives = 35/39 (89%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+G +++Q EY+Q+IGSL+Y MNCTRPDIA++V +LSR
Sbjct: 212 KNKGDAISQREYSQVIGSLMYIMNCTRPDIAYSVSRLSR 250
Score = 38.5 bits (88), Expect(3) = 3e-26
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = -3
Query: 382 VSQAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMKAE 269
++Q+HYI+ L+KY E+K A T +D++ K KK K +
Sbjct: 179 LTQSHYIEATLRKYGHLESKDAITPFDANSKLKKNKGD 216
>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 76.3 bits (186), Expect(3) = 6e-26
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY +YPAVLEGYSD+ D+DE K+ S
Sbjct: 1105 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTRYPAVLEGYSDSNWISDVDEIKATS 1164
Score = 50.4 bits (119), Expect(3) = 6e-26
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1070 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Score = 37.7 bits (86), Expect(3) = 6e-26
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNK 1072
>gb|AAW57815.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1109
Score = 76.3 bits (186), Expect(3) = 6e-26
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY +YPAVLEGYSD+ D+DE K+ S
Sbjct: 912 KLSRFTSNPGDDHWRALERVMRYLKGTMELGLHYSRYPAVLEGYSDSNWISDVDEIKATS 971
Score = 50.4 bits (119), Expect(3) = 6e-26
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 877 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 915
Score = 37.7 bits (86), Expect(3) = 6e-26
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 846 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNK 879
>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
Group]
Length = 1911
Score = 74.7 bits (182), Expect(3) = 9e-26
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1105 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1164
Score = 50.4 bits (119), Expect(3) = 9e-26
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1070 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Score = 38.5 bits (88), Expect(3) = 9e-26
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNK 1072
>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1460
Score = 74.7 bits (182), Expect(3) = 9e-26
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1105 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1164
Score = 50.4 bits (119), Expect(3) = 9e-26
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1070 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Score = 38.5 bits (88), Expect(3) = 9e-26
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNK 1072
>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1320
Score = 74.7 bits (182), Expect(3) = 1e-25
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1105 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1164
Score = 50.4 bits (119), Expect(3) = 1e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1070 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Score = 38.5 bits (88), Expect(3) = 1e-25
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNK 1072
>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1320
Score = 74.7 bits (182), Expect(3) = 1e-25
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1105 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1164
Score = 50.4 bits (119), Expect(3) = 1e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1070 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Score = 38.5 bits (88), Expect(3) = 1e-25
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNK 1072
>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
Length = 1302
Score = 74.7 bits (182), Expect(3) = 1e-25
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1105 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1164
Score = 50.4 bits (119), Expect(3) = 1e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1070 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Score = 38.5 bits (88), Expect(3) = 1e-25
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNK 1072
>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 74.7 bits (182), Expect(3) = 1e-25
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1105 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1164
Score = 50.4 bits (119), Expect(3) = 1e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1070 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Score = 38.5 bits (88), Expect(3) = 1e-25
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNK 1072
>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 68.6 bits (166), Expect(3) = 1e-25
Identities = 33/60 (55%), Positives = 42/60 (70%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW+ + RVL+YL T YGLHY +YPAVLEGYSDA ++ +SKS S
Sbjct: 1079 KLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGYSDANWISNVKDSKSHS 1138
Score = 62.8 bits (151), Expect(3) = 1e-25
Identities = 28/39 (71%), Positives = 36/39 (92%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+G SV+Q+EY++IIGSL+Y M+CTRPDIA+AV KLSR
Sbjct: 1044 KNKGESVSQVEYSRIIGSLMYLMSCTRPDIAYAVSKLSR 1082
Score = 32.3 bits (72), Expect(3) = 1e-25
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 382 VSQAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMKAE 269
+SQ+HY+DKIL K+++ + A T D ++ K K E
Sbjct: 1011 LSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGE 1048
>gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1579
Score = 74.7 bits (182), Expect(3) = 1e-25
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1364 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1423
Score = 50.4 bits (119), Expect(3) = 1e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1329 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1367
Score = 38.1 bits (87), Expect(3) = 1e-25
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1298 QSHYVEKILNRFGYIDSKPSPTSYDPSLLLRKNK 1331
>gb|AAX96807.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77550001|gb|ABA92798.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1234
Score = 72.8 bits (177), Expect(3) = 1e-25
Identities = 33/60 (55%), Positives = 42/60 (70%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YP +LEGYSD+ D+DE K+ S
Sbjct: 1013 KLSRFTSNPGDDHWRALERVMRYLKGTMELGLHYSGYPVILEGYSDSNWISDVDEIKATS 1072
Score = 50.4 bits (119), Expect(3) = 1e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 978 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1016
Score = 40.0 bits (92), Expect(3) = 1e-25
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ F++K +PT YD S+ +K K
Sbjct: 947 QSHYVEKILNRFGYFDSKPSPTPYDPSLLLRKNK 980
>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1861
Score = 74.7 bits (182), Expect(3) = 2e-25
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1519 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1578
Score = 50.4 bits (119), Expect(3) = 2e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1484 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1522
Score = 37.7 bits (86), Expect(3) = 2e-25
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1453 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNK 1486
>gb|ABA99751.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1805
Score = 74.7 bits (182), Expect(3) = 2e-25
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1590 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1649
Score = 50.4 bits (119), Expect(3) = 2e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1555 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1593
Score = 37.7 bits (86), Expect(3) = 2e-25
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1524 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNK 1557
>gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1518
Score = 74.7 bits (182), Expect(3) = 2e-25
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1321 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1380
Score = 50.4 bits (119), Expect(3) = 2e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1286 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1324
Score = 37.7 bits (86), Expect(3) = 2e-25
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1255 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNK 1288
>gb|ABA96779.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1468
Score = 74.7 bits (182), Expect(3) = 2e-25
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1192 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1251
Score = 50.4 bits (119), Expect(3) = 2e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1157 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1195
Score = 37.7 bits (86), Expect(3) = 2e-25
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1126 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNK 1159
>gb|ABF97537.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1397
Score = 74.7 bits (182), Expect(3) = 2e-25
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 180 KVEQDTGNPGTAHWEALQRVLRYLHGTILYGLHYGKYPAVLEGYSDAT*NLDLDESKSIS 1
K+ + T NPG HW AL+RV+RYL GT+ GLHY YPAVLEGYSD+ D+DE K+ S
Sbjct: 1182 KLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 1241
Score = 50.4 bits (119), Expect(3) = 2e-25
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -2
Query: 284 KNEGRSVAQLEYAQIIGSLIYAMNCTRPDIAFAVGKLSR 168
KN+ + QLEY+QIIGSL+Y + TRPDI+FAV KLSR
Sbjct: 1147 KNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1185
Score = 37.7 bits (86), Expect(3) = 2e-25
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 376 QAHYIDKILKKYNQFETKSAPTLYDSSIKFKKMK 275
Q+HY++KIL ++ ++K +PT YD S+ +K K
Sbjct: 1116 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNK 1149