BLASTX nr result

ID: Cornus23_contig00024061 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00024061
         (284 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263021.1| PREDICTED: glycine-rich RNA-binding protein ...    98   2e-18
ref|XP_008241226.1| PREDICTED: glycine-rich RNA-binding protein ...    92   2e-16
ref|XP_007207675.1| hypothetical protein PRUPE_ppa023139mg, part...    92   2e-16
ref|XP_011624062.1| PREDICTED: glycine-rich RNA-binding protein ...    91   3e-16
ref|XP_010028363.1| PREDICTED: glycine-rich RNA-binding protein ...    91   3e-16
ref|XP_010241007.1| PREDICTED: glycine-rich RNA-binding protein ...    86   1e-14
ref|XP_008226798.1| PREDICTED: glycine-rich RNA-binding protein ...    85   2e-14
ref|XP_007212216.1| hypothetical protein PRUPE_ppa013115mg [Prun...    85   2e-14
ref|XP_009355558.1| PREDICTED: glycine-rich RNA-binding protein ...    84   4e-14
ref|XP_010092279.1| hypothetical protein L484_021140 [Morus nota...    84   5e-14
ref|XP_011048254.1| PREDICTED: glycine-rich RNA-binding protein ...    83   7e-14
ref|XP_010908156.1| PREDICTED: glycine-rich RNA-binding protein ...    83   9e-14
ref|XP_008806788.1| PREDICTED: glycine-rich RNA-binding protein ...    83   9e-14
ref|XP_014491439.1| PREDICTED: glycine-rich RNA-binding protein ...    82   1e-13
ref|XP_009384210.1| PREDICTED: glycine-rich RNA-binding protein ...    82   2e-13
ref|XP_008349954.1| PREDICTED: glycine-rich RNA-binding protein ...    82   2e-13
ref|XP_008349953.1| PREDICTED: glycine-rich RNA-binding protein ...    82   2e-13
ref|XP_002316957.1| RNA-binding family protein [Populus trichoca...    82   2e-13
ref|XP_010267842.1| PREDICTED: glycine-rich RNA-binding protein ...    82   2e-13
ref|XP_008365868.1| PREDICTED: glycine-rich RNA-binding protein ...    82   2e-13

>ref|XP_002263021.1| PREDICTED: glycine-rich RNA-binding protein blt801 [Vitis vinifera]
           gi|297740398|emb|CBI30580.3| unnamed protein product
           [Vitis vinifera]
          Length = 133

 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 52/81 (64%), Positives = 62/81 (76%), Gaps = 2/81 (2%)
 Frame = -1

Query: 239 MAFRAGLIRRFLFSSQPNASTVTAANTLAAP--STTLFVSGLNKRTTSEKLQEAFSKFGD 66
           MA RAGL++RF  +S  ++ T  AAN   AP  STTLF+SGLNKRTTSEKL E  SKFG+
Sbjct: 1   MATRAGLLKRFFSTSMFSSQTTAAANAKPAPIPSTTLFISGLNKRTTSEKLNEEASKFGE 60

Query: 65  VEHARVVIDWTSGFSKGYGFV 3
           V HARVV D +SG+SKG+GFV
Sbjct: 61  VVHARVVTDRSSGYSKGFGFV 81


>ref|XP_008241226.1| PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial-like
           [Prunus mume]
          Length = 135

 Score = 91.7 bits (226), Expect = 2e-16
 Identities = 52/97 (53%), Positives = 65/97 (67%), Gaps = 18/97 (18%)
 Frame = -1

Query: 239 MAFRAGLIRRFL----FSSQPNASTVTAANTLAA--------------PSTTLFVSGLNK 114
           MA RAGL+RRFL    F+SQ  A+   A++  A+              P+TTLFV+GLNK
Sbjct: 1   MALRAGLVRRFLSTPIFASQSRAAATAASSAYASVADSNNISDKATAEPNTTLFVAGLNK 60

Query: 113 RTTSEKLQEAFSKFGDVEHARVVIDWTSGFSKGYGFV 3
           RTT EKL EAFS+FG+V + +VVID  SGFSKG+GFV
Sbjct: 61  RTTPEKLNEAFSQFGEVVNVKVVIDRDSGFSKGFGFV 97


>ref|XP_007207675.1| hypothetical protein PRUPE_ppa023139mg, partial [Prunus persica]
           gi|462403317|gb|EMJ08874.1| hypothetical protein
           PRUPE_ppa023139mg, partial [Prunus persica]
          Length = 134

 Score = 91.7 bits (226), Expect = 2e-16
 Identities = 53/97 (54%), Positives = 63/97 (64%), Gaps = 18/97 (18%)
 Frame = -1

Query: 239 MAFRAGLIRRFL----FSSQPNASTVTAA--------------NTLAAPSTTLFVSGLNK 114
           MA RAGL+RRFL    F+SQ  A+   A+                 A PSTTLFV+GLNK
Sbjct: 1   MALRAGLVRRFLSTPVFASQSRAAATAASLAYASVADSNNISDKATAEPSTTLFVAGLNK 60

Query: 113 RTTSEKLQEAFSKFGDVEHARVVIDWTSGFSKGYGFV 3
           RTT EKL EAFS+FG+V + +VVID  SGFSKG+GFV
Sbjct: 61  RTTPEKLNEAFSQFGEVVNVKVVIDRDSGFSKGFGFV 97


>ref|XP_011624062.1| PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like
           [Amborella trichopoda]
          Length = 132

 Score = 91.3 bits (225), Expect = 3e-16
 Identities = 55/84 (65%), Positives = 63/84 (75%), Gaps = 5/84 (5%)
 Frame = -1

Query: 239 MAFRAG--LIRRFLFSSQ-PNASTVTAA--NTLAAPSTTLFVSGLNKRTTSEKLQEAFSK 75
           MAFR G  +IRR L SS  P +S V+A   N  A PST+LFVSGLNKRTTSEKL+EAF K
Sbjct: 3   MAFRGGGGVIRRLLSSSPFPFSSPVSATPPNPPAVPSTSLFVSGLNKRTTSEKLREAFLK 62

Query: 74  FGDVEHARVVIDWTSGFSKGYGFV 3
           FG+V  ARVV D  SG+SKG+GFV
Sbjct: 63  FGEVVQARVVTDRVSGYSKGFGFV 86


>ref|XP_010028363.1| PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial-like
           [Eucalyptus grandis] gi|629088854|gb|KCW55107.1|
           hypothetical protein EUGRSUZ_I01065 [Eucalyptus grandis]
          Length = 142

 Score = 90.9 bits (224), Expect = 3e-16
 Identities = 53/91 (58%), Positives = 61/91 (67%), Gaps = 12/91 (13%)
 Frame = -1

Query: 239 MAFRAGLIRRFL----FSSQPNASTVTAANTLAA--------PSTTLFVSGLNKRTTSEK 96
           MA R G  RR L    F+SQ +A   TAA T AA        PS TLFVSGLNKRTT+EK
Sbjct: 1   MAMRLGFARRLLSTSSFASQLSAPAATAAATAAAGSDKPAPIPSDTLFVSGLNKRTTTEK 60

Query: 95  LQEAFSKFGDVEHARVVIDWTSGFSKGYGFV 3
           L E+FS+FG V HA+VV D  SG+SKG+GFV
Sbjct: 61  LHESFSQFGQVVHAKVVTDRNSGYSKGFGFV 91


>ref|XP_010241007.1| PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like
           [Nelumbo nucifera]
          Length = 123

 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 51/86 (59%), Positives = 59/86 (68%), Gaps = 7/86 (8%)
 Frame = -1

Query: 239 MAFRA------GLIRRFL-FSSQPNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAF 81
           MA RA      GL R F  F+  P +S  T A   A PST LFVSGLNKRTTSE L+E+F
Sbjct: 1   MAMRAVAAAPRGLRRLFSSFTFTPPSSAATTAPPPAEPSTNLFVSGLNKRTTSEGLRESF 60

Query: 80  SKFGDVEHARVVIDWTSGFSKGYGFV 3
           SKFG+V +ARVV D  SG+SKG+GFV
Sbjct: 61  SKFGEVVYARVVTDRVSGYSKGFGFV 86


>ref|XP_008226798.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           [Prunus mume]
          Length = 142

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 47/73 (64%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
 Frame = -1

Query: 212 RFLFSSQ---PNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGDVEHARVVI 42
           R LFS+    P  S    A   A PST LFVSGL+KRTTSEKLQEAFS+FG+V HARVV 
Sbjct: 20  RRLFSTSFIPPMNSPAPQAREKAEPSTNLFVSGLSKRTTSEKLQEAFSQFGEVVHARVVT 79

Query: 41  DWTSGFSKGYGFV 3
           D  SG+SKG+GFV
Sbjct: 80  DRVSGYSKGFGFV 92


>ref|XP_007212216.1| hypothetical protein PRUPE_ppa013115mg [Prunus persica]
           gi|462408081|gb|EMJ13415.1| hypothetical protein
           PRUPE_ppa013115mg [Prunus persica]
          Length = 139

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 47/73 (64%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
 Frame = -1

Query: 212 RFLFSSQ---PNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGDVEHARVVI 42
           R LFS+    P  S    A   A PST LFVSGL+KRTTSEKLQEAFS+FG+V HARVV 
Sbjct: 17  RRLFSTSFIPPMNSPAPQAREKAEPSTNLFVSGLSKRTTSEKLQEAFSQFGEVVHARVVT 76

Query: 41  DWTSGFSKGYGFV 3
           D  SG+SKG+GFV
Sbjct: 77  DRVSGYSKGFGFV 89


>ref|XP_009355558.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Pyrus
           x bretschneideri]
          Length = 142

 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 46/75 (61%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = -1

Query: 224 GLIRRFLFSSQPNASTVT-AANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGDVEHARV 48
           GL R F  S  P  ++ T +A   A PST LFVSGL+KRTT+EKL EAFS+FG+V HARV
Sbjct: 18  GLSRLFSTSFIPPMNSATPSAREQAEPSTNLFVSGLSKRTTTEKLHEAFSQFGEVVHARV 77

Query: 47  VIDWTSGFSKGYGFV 3
           V D  SG+SKG+GFV
Sbjct: 78  VTDRVSGYSKGFGFV 92


>ref|XP_010092279.1| hypothetical protein L484_021140 [Morus notabilis]
           gi|587861049|gb|EXB50913.1| hypothetical protein
           L484_021140 [Morus notabilis]
          Length = 143

 Score = 83.6 bits (205), Expect = 5e-14
 Identities = 48/83 (57%), Positives = 57/83 (68%), Gaps = 9/83 (10%)
 Frame = -1

Query: 224 GLIRRFLFSSQP---------NASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKF 72
           GL+RR LFS+           +A+    A   A PS  LFVSGL+KRTT+EKL EAFS+F
Sbjct: 12  GLVRR-LFSTTSTSPFIPPPIHAAAQAPARPQADPSANLFVSGLSKRTTTEKLHEAFSQF 70

Query: 71  GDVEHARVVIDWTSGFSKGYGFV 3
           G+VEHARVV D  SGFSKG+GFV
Sbjct: 71  GEVEHARVVTDRVSGFSKGFGFV 93


>ref|XP_011048254.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           [Populus euphratica]
          Length = 157

 Score = 83.2 bits (204), Expect = 7e-14
 Identities = 46/83 (55%), Positives = 56/83 (67%), Gaps = 7/83 (8%)
 Frame = -1

Query: 230 RAGLIRRFLFSSQ-------PNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKF 72
           R GL+R F  +S        P  +  T A   A P+T LFVSGL+KRTT+E LQEAFSKF
Sbjct: 17  RGGLLRLFSTTSTLSSSFPFPQTTQQTPAREQAEPNTNLFVSGLSKRTTTEGLQEAFSKF 76

Query: 71  GDVEHARVVIDWTSGFSKGYGFV 3
           G+V  A+VV D TSG+SKG+GFV
Sbjct: 77  GEVVQAKVVTDRTSGYSKGFGFV 99


>ref|XP_010908156.1| PREDICTED: glycine-rich RNA-binding protein 2-like [Elaeis
           guineensis]
          Length = 138

 Score = 82.8 bits (203), Expect = 9e-14
 Identities = 50/81 (61%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
 Frame = -1

Query: 236 AFRAGLIRRF---LFSSQPNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGD 66
           A RAG  R F    FS  P A    AA   A PST LFVSGL+KRTTSE L EAF+KFG 
Sbjct: 3   AVRAGFRRLFSISAFSPPPPA----AARPAAEPSTNLFVSGLSKRTTSEGLGEAFAKFGQ 58

Query: 65  VEHARVVIDWTSGFSKGYGFV 3
           V HARVV D  SG+SKG+GFV
Sbjct: 59  VVHARVVTDRVSGYSKGFGFV 79


>ref|XP_008806788.1| PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial
           [Phoenix dactylifera]
          Length = 139

 Score = 82.8 bits (203), Expect = 9e-14
 Identities = 50/80 (62%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
 Frame = -1

Query: 236 AFRAGLIRRFLFS--SQPNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGDV 63
           A RAG  R F  S  S P A+   A    A PST LFVSGL+KRTTSE L+EAFSKFG V
Sbjct: 3   AVRAGFRRLFSVSAFSPPPAA---APRPAAEPSTNLFVSGLSKRTTSEGLREAFSKFGQV 59

Query: 62  EHARVVIDWTSGFSKGYGFV 3
            HARVV D  SG+SKG+GFV
Sbjct: 60  IHARVVTDRVSGYSKGFGFV 79


>ref|XP_014491439.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Vigna
           radiata var. radiata]
          Length = 144

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 40/63 (63%), Positives = 48/63 (76%)
 Frame = -1

Query: 191 PNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGDVEHARVVIDWTSGFSKGY 12
           P  +  T A   A P+T LFVSGL+KRTT+EKL+E FSKFG+V HARVV D  SG+SKG+
Sbjct: 33  PTGAVPTPARPTAEPNTNLFVSGLSKRTTTEKLREEFSKFGEVVHARVVADRVSGYSKGF 92

Query: 11  GFV 3
           GFV
Sbjct: 93  GFV 95


>ref|XP_009384210.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
           [Musa acuminata subsp. malaccensis]
          Length = 164

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 45/71 (63%), Positives = 48/71 (67%)
 Frame = -1

Query: 215 RRFLFSSQPNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGDVEHARVVIDW 36
           RR    S  +     AA   A PST LFVSGLNKRTTSE L EAFSKFG V HARVV D 
Sbjct: 34  RRLFSISAFSPPLPAAARPAAEPSTNLFVSGLNKRTTSEGLWEAFSKFGQVVHARVVTDR 93

Query: 35  TSGFSKGYGFV 3
            SG+SKG+GFV
Sbjct: 94  VSGYSKGFGFV 104


>ref|XP_008349954.1| PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial-like
           isoform X2 [Malus domestica]
          Length = 137

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 41/63 (65%), Positives = 48/63 (76%)
 Frame = -1

Query: 191 PNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGDVEHARVVIDWTSGFSKGY 12
           P  S   +A   A PST LFVSGL+KRTT+EKL EAFS+FG+V HARVV D  SG+SKG+
Sbjct: 30  PMNSATPSAREQAEPSTNLFVSGLSKRTTTEKLHEAFSQFGEVVHARVVTDRVSGYSKGF 89

Query: 11  GFV 3
           GFV
Sbjct: 90  GFV 92


>ref|XP_008349953.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
           isoform X1 [Malus domestica]
          Length = 142

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 41/63 (65%), Positives = 48/63 (76%)
 Frame = -1

Query: 191 PNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGDVEHARVVIDWTSGFSKGY 12
           P  S   +A   A PST LFVSGL+KRTT+EKL EAFS+FG+V HARVV D  SG+SKG+
Sbjct: 30  PMNSATPSAREQAEPSTNLFVSGLSKRTTTEKLHEAFSQFGEVVHARVVTDRVSGYSKGF 89

Query: 11  GFV 3
           GFV
Sbjct: 90  GFV 92


>ref|XP_002316957.1| RNA-binding family protein [Populus trichocarpa]
           gi|222860022|gb|EEE97569.1| RNA-binding family protein
           [Populus trichocarpa]
          Length = 153

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 46/83 (55%), Positives = 54/83 (65%), Gaps = 7/83 (8%)
 Frame = -1

Query: 230 RAGLIRRFLFSSQ-------PNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKF 72
           R G +R F  +S        P  +  T A   A P+T LFVSGL+KRTTSE LQEAFSKF
Sbjct: 19  RGGFLRLFSTTSTSSSSFPFPQTTQQTPAREQAEPNTNLFVSGLSKRTTSEGLQEAFSKF 78

Query: 71  GDVEHARVVIDWTSGFSKGYGFV 3
           G+V  ARVV D  SG+SKG+GFV
Sbjct: 79  GEVVQARVVTDRVSGYSKGFGFV 101


>ref|XP_010267842.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           [Nelumbo nucifera]
          Length = 140

 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 45/74 (60%), Positives = 54/74 (72%), Gaps = 4/74 (5%)
 Frame = -1

Query: 212 RFLFSS----QPNASTVTAANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGDVEHARVV 45
           R LFSS     P +++ T A   A PS  LFVSGL+KRTTSE L+EAFSKFG+V HA+VV
Sbjct: 16  RRLFSSFPLPPPPSTSATTAPPPAEPSPNLFVSGLSKRTTSEGLREAFSKFGEVVHAKVV 75

Query: 44  IDWTSGFSKGYGFV 3
            D  SG+SKG+GFV
Sbjct: 76  TDRVSGYSKGFGFV 89


>ref|XP_008365868.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Malus
           domestica]
          Length = 142

 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 45/75 (60%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
 Frame = -1

Query: 224 GLIRRFLFSSQPNASTVT-AANTLAAPSTTLFVSGLNKRTTSEKLQEAFSKFGDVEHARV 48
           GL R F  S  P  ++ T +A   A PST LFVSGL+KRTT+EKL E FS+FG+V HARV
Sbjct: 18  GLGRLFSTSFIPPMNSATPSAREQAEPSTNLFVSGLSKRTTTEKLHETFSQFGEVVHARV 77

Query: 47  VIDWTSGFSKGYGFV 3
           V D  SG+SKG+GFV
Sbjct: 78  VTDRVSGYSKGFGFV 92


Top